UHGV-0104230

Genome information

Genome length 26,660 bps

CDS count 51

Completeness 63.71% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104230
vOTU ID	vOTU-041505
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253758
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.08
Jumbo phage	No

Genome content
Genome length	26,660 bps
GC content	52.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.05%
Average CDS length	481.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104230_1	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0104230_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0104230_2	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0104230_2	eggNOG-mapper	1211817.CCAT010000079_gene1379	Phage tail protein	NA
UHGV-0104230_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0104230_2	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0104230_3	PHROG	phrog_538	minor tail protein	tail
UHGV-0104230_3	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0104230_3	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0104230_3	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0104230_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0104230_4	PHROG	phrog_9534	head protein	head and packaging
UHGV-0104230_4	UniRef90	UniRef90_A0A2T0B3H8	BppU_IgG domain-containing protein	NA
UHGV-0104230_4	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0104230_9	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0104230_9	PHROG	phrog_894	endolysin	lysis
UHGV-0104230_9	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0104230_9	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0104230_9	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0104230_9	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0104230_9	COG	COG3108	NA	NA
UHGV-0104230_9	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0104230_10	PHROG	phrog_937	hemolysin	other
UHGV-0104230_10	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0104230_11	PHROG	phrog_10091	holin	lysis
UHGV-0104230_11	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-0104230_11	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0104230_11	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0104230_11	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0104230_11	COG	COG5546	NA	NA
UHGV-0104230_11	Structural annotation	COG5546	NA	NA
UHGV-0104230_12	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0104230_13	PHROG	phrog_3754	NA	unknown function
UHGV-0104230_13	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0104230_14	PHROG	phrog_21718	NA	unknown function
UHGV-0104230_14	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0104230_15	PHROG	phrog_22984	NA	unknown function
UHGV-0104230_16	PHROG	phrog_16490	NA	unknown function
UHGV-0104230_16	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0104230_18	PHROG	phrog_20016	NA	unknown function
UHGV-0104230_18	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0104230_18	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0104230_18	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0104230_19	Structural annotation	PF12510	NA	NA
UHGV-0104230_21	KOfam	K14059	int; integrase	NA
UHGV-0104230_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0104230_21	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-0104230_21	eggNOG-mapper	1121422.AUMW01000024_gene239	Belongs to the 'phage' integrase family	NA
UHGV-0104230_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104230_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0104230_21	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0104230_22	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0104230_22	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0104230_23	UniRef90	UniRef90_A0A373NUR9	Zinc ribbon domain-containing protein	NA
UHGV-0104230_23	eggNOG-mapper	1348338.ADILRU_1827	NA	NA
UHGV-0104230_23	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0104230_25	PHROG	phrog_585	NA	unknown function
UHGV-0104230_25	UniRef90	UniRef90_UPI001F52F0FC	NA	NA
UHGV-0104230_25	eggNOG-mapper	1158602.I590_03003	NA	NA
UHGV-0104230_25	Pfam	PF10711	NA	DUF2513
UHGV-0104230_25	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0104230_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104230_26	UniRef90	UniRef90_A0A2N2CQC6	XRE family transcriptional regulator	NA
UHGV-0104230_26	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0104230_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104230_26	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0104230_27	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0104230_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104230_27	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0104230_29	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-0104230_30	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0104230_34	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104230_34	UniRef90	UniRef90_UPI001D078B74	YqaJ viral recombinase family protein	NA
UHGV-0104230_34	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0104230_34	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0104230_34	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0104230_34	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0104230_34	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0104230_35	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0104230_36	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0104230_36	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0104230_36	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0104230_36	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0104230_36	Pfam	PF03837	RecT family	RecT
UHGV-0104230_36	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0104230_36	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0104230_36	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0104230_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0104230_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0104230_37	UniRef90	UniRef90_UPI001C118A83	single-stranded DNA-binding protein	NA
UHGV-0104230_37	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0104230_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0104230_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0104230_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0104230_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0104230_37	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0104230_38	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0104230_38	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0104230_38	UniRef90	UniRef90_A0A7G9WF80	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0104230_38	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0104230_38	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0104230_38	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0104230_38	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0104230_39	PHROG	phrog_15768	NA	unknown function
UHGV-0104230_39	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0104230_39	Pfam	PF19808	NA	DUF6291
UHGV-0104230_39	Structural annotation	PF19808	NA	NA
UHGV-0104230_40	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0104230_40	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0104230_40	UniRef90	UniRef90_A0A4Z0Y679	DNA replication protein DnaC	NA
UHGV-0104230_40	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0104230_40	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0104230_40	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0104230_40	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0104230_42	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0104230_42	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0104230_42	UniRef90	UniRef90_UPI00164AFBC1	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0104230_42	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0104230_42	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0104230_42	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0104230_42	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0104230_42	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0104230_43	PHROG	phrog_4433	NA	unknown function
UHGV-0104230_43	eggNOG-mapper	445970.ALIPUT_01592	DNA-templated transcription, initiation	NA
UHGV-0104230_43	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0104230_44	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0104230_44	UniRef90	UniRef90_R6QWY1	28	NA
UHGV-0104230_44	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0104230_47	PHROG	phrog_3136	NA	unknown function
UHGV-0104230_47	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-0104230_47	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0104230_47	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0104230_47	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0104230_50	Pfam	PF04448	NA	DUF551
UHGV-0104230_50	Structural annotation	NF041588	NA	NA