UHGV-0104283

Genome information

Genome length 32,494 bps

CDS count 46

Completeness 93.32% (high-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104283
vOTU ID	vOTU-060147
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_240530
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.32% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.34
Jumbo phage	No

Genome content
Genome length	32,494 bps
GC content	55.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.73%
Average CDS length	650.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104283_1	UniRef90	UniRef90_R6NQM1	Putative TnpX site-specific recombinase	NA
UHGV-0104283_1	eggNOG-mapper	478749.BRYFOR_07651	NA	NA
UHGV-0104283_1	Structural annotation	TIGR03826	NA	NA
UHGV-0104283_2	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0104283_2	PHROG	phrog_2104	NA	unknown function
UHGV-0104283_2	UniRef90	UniRef90_X8K268	DNA-binding helix-turn-helix protein	NA
UHGV-0104283_2	eggNOG-mapper	888727.HMPREF9092_0491	Helix-turn-helix	NA
UHGV-0104283_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104283_2	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0104283_2	Structural annotation	PF15731, NF007481, COG2944	NA	NA
UHGV-0104283_4	PHROG	phrog_199	holin	lysis
UHGV-0104283_4	UniRef90	UniRef90_A0A316PI30	Holin	NA
UHGV-0104283_4	eggNOG-mapper	580327.Tthe_0809	Bacteriophage holin family	NA
UHGV-0104283_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0104283_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0104283_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0104283_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0104283_5	KOfam	K19303	mepH; murein DD-endopeptidase [EC:3.4.-.-]	NA
UHGV-0104283_5	PHROG	phrog_329	minor tail protein	tail
UHGV-0104283_5	UniRef90	UniRef90_A0A2V2EEK9	NlpC/P60 domain-containing protein	NA
UHGV-0104283_5	eggNOG-mapper	755731.Clo1100_1179	cysteine-type peptidase activity	NA
UHGV-0104283_5	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0104283_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0104283_5	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0104283_5	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0104283_6	Structural annotation	PF12988	NA	NA
UHGV-0104283_7	Structural annotation	PF14600, COG3979	NA	NA
UHGV-0104283_9	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0104283_9	Pfam	PF19789	NA	DUF6273
UHGV-0104283_9	Structural annotation	PF19789	NA	NA
UHGV-0104283_10	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0104283_10	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0104283_10	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0104283_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0104283_10	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0104283_11	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0104283_11	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0104283_11	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0104283_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0104283_11	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0104283_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0104283_11	COG	COG4926	Phage-related protein	NA
UHGV-0104283_11	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0104283_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0104283_12	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0104283_12	eggNOG-mapper	1262449.CP6013_2095	tail component	NA
UHGV-0104283_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0104283_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0104283_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0104283_13	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0104283_13	UniRef90	UniRef90_A0A7X6UMX1	Phage tail protein (Fragment)	NA
UHGV-0104283_13	eggNOG-mapper	498761.HM1_2969	nuclear chromosome segregation	NA
UHGV-0104283_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0104283_13	Structural annotation	PF20155	NA	NA
UHGV-0104283_16	PHROG	phrog_88	major tail protein	tail
UHGV-0104283_16	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0104283_16	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0104283_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0104283_16	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0104283_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0104283_17	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0104283_17	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0104283_17	Structural annotation	TIGR01725	NA	NA
UHGV-0104283_18	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0104283_18	Structural annotation	PF05657	NA	NA
UHGV-0104283_19	PHROG	phrog_19734	NA	unknown function
UHGV-0104283_19	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-0104283_19	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0104283_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0104283_20	PHROG	phrog_2550	NA	unknown function
UHGV-0104283_20	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0104283_20	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0104283_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0104283_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0104283_21	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0104283_21	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0104283_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0104283_21	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0104283_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0104283_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0104283_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0104283_22	KOfam	K06904	NA	NA
UHGV-0104283_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0104283_22	UniRef90	UniRef90_U2SBX0	Phage prohead protease, HK97 family	NA
UHGV-0104283_22	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0104283_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0104283_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0104283_22	COG	COG3740	Phage head maturation protease	NA
UHGV-0104283_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0104283_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0104283_23	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0104283_23	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0104283_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0104283_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0104283_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0104283_23	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0104283_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0104283_24	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0104283_24	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0104283_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0104283_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0104283_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0104283_24	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0104283_25	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0104283_25	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0104283_25	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0104283_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0104283_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0104283_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0104283_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104283_26	UniRef90	UniRef90_A0A0D8IV26	HNH endonuclease	NA
UHGV-0104283_26	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-0104283_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0104283_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0104283_28	PHROG	phrog_7704	NA	unknown function
UHGV-0104283_28	UniRef90	UniRef90_UPI001873F304	NA	NA
UHGV-0104283_28	Pfam	PF04448	NA	DUF551
UHGV-0104283_28	Structural annotation	NF041588	NA	NA
UHGV-0104283_29	PHROG	phrog_824	NA	unknown function
UHGV-0104283_29	UniRef90	UniRef90_R6G481	VRR-NUC domain protein	NA
UHGV-0104283_29	eggNOG-mapper	411470.RUMGNA_02049	VRR-NUC domain	NA
UHGV-0104283_29	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0104283_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0104283_30	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0104283_30	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0104283_32	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0104283_32	UniRef90	UniRef90_A0A350XZ07	Phg_2220_C domain-containing protein	NA
UHGV-0104283_32	eggNOG-mapper	642492.Clole_1831	Helix-turn-helix domain	NA
UHGV-0104283_32	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0104283_32	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0104283_32	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0104283_32	Structural annotation	PF09524, TIGR02220	NA	NA
UHGV-0104283_34	PHROG	phrog_15609	NA	unknown function
UHGV-0104283_34	UniRef90	UniRef90_UPI001246A313	NA	NA
UHGV-0104283_34	eggNOG-mapper	1226322.HMPREF1545_00098	NA	NA
UHGV-0104283_34	Pfam	PF11300	NA	DUF3102
UHGV-0104283_34	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0104283_34	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0104283_35	PHROG	phrog_8470	NA	unknown function
UHGV-0104283_35	UniRef90	UniRef90_UPI001875A728	PcfJ domain-containing protein	NA
UHGV-0104283_35	eggNOG-mapper	1157490.EL26_01845	PcfJ-like protein	NA
UHGV-0104283_35	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0104283_35	Structural annotation	PF14284	NA	NA
UHGV-0104283_36	UniRef90	UniRef90_UPI000FD875FF	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0104283_36	eggNOG-mapper	913865.DOT_1302	NA	NA
UHGV-0104283_36	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0104283_36	Structural annotation	PF14058	NA	NA
UHGV-0104283_37	PHROG	phrog_24368	NA	unknown function
UHGV-0104283_37	eggNOG-mapper	742740.HMPREF9474_04313	NA	NA
UHGV-0104283_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104283_42	UniRef90	UniRef90_A0A7T1AZQ5	Helix-turn-helix transcriptional regulator	NA
UHGV-0104283_42	eggNOG-mapper	574376.BAMA_16250	Helix-turn-helix XRE-family like proteins	NA
UHGV-0104283_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0104283_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0104283_42	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0104283_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0104283_43	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0104283_45	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0104283_45	PHROG	phrog_95	integrase	integration and excision
UHGV-0104283_45	UniRef90	UniRef90_A0A4Z0YBU8	Recombinase	NA
UHGV-0104283_45	eggNOG-mapper	1128398.Curi_c22150	Resolvase, N terminal domain	NA
UHGV-0104283_45	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0104283_45	Pfam	PF07508	Recombinase	Recombinase
UHGV-0104283_45	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0104283_45	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0104283_45	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA