UHGV-0104293

Genome information

Genome length 50,949 bps

CDS count 78

Completeness 98.52% (high-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104293
vOTU ID	vOTU-068149
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_252237
BioSample	SAMEA3708755
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.52% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.53
Jumbo phage	No

Genome content
Genome length	50,949 bps
GC content	39.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	87.14%
Average CDS length	574.62 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104293_1	eggNOG-mapper	742765.HMPREF9457_01634	CAAX protease self-immunity	NA
UHGV-0104293_1	COG	COG1266	Membrane protease YdiL, CAAX protease family	NA
UHGV-0104293_2	UniRef90	UniRef90_UPI001D01D5CE	NA	NA
UHGV-0104293_3	KOfam	K14059	int; integrase	NA
UHGV-0104293_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0104293_3	UniRef90	UniRef90_A0A373MXN6	Site-specific integrase	NA
UHGV-0104293_3	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0104293_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0104293_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104293_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0104293_3	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0104293_5	UniRef90	UniRef90_A0A0J6CPU8	Adhesin_P1_N domain-containing protein	NA
UHGV-0104293_5	eggNOG-mapper	318464.IO99_05240	NA	NA
UHGV-0104293_6	PHROG	phrog_13700	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0104293_6	UniRef90	UniRef90_A0A373MXR4	Ftsk_gamma domain-containing protein	NA
UHGV-0104293_6	eggNOG-mapper	1232452.BAIB02000006_gene1097	Ftsk_gamma	NA
UHGV-0104293_6	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0104293_6	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0104293_6	Pfam	PF17854	FtsK alpha domain	FtsK_alpha
UHGV-0104293_6	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0104293_7	PHROG	phrog_87	metallo-protease	other
UHGV-0104293_7	UniRef90	UniRef90_A0A373MWI1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0104293_7	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0104293_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0104293_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0104293_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0104293_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0104293_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104293_8	UniRef90	UniRef90_A0A373MWG9	XRE family transcriptional regulator	NA
UHGV-0104293_8	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0104293_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104293_8	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0104293_8	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0104293_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104293_9	UniRef90	UniRef90_A0A373MWF5	XRE family transcriptional regulator	NA
UHGV-0104293_9	eggNOG-mapper	1536772.R70723_06540	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0104293_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104293_9	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0104293_12	Structural annotation	PF20037, COG3212	NA	NA
UHGV-0104293_13	UniRef90	UniRef90_A0A3E4LWT8	HTH psq-type domain-containing protein	NA
UHGV-0104293_13	Structural annotation	PF21291, MF_00535, NF007257, COG3655	NA	NA
UHGV-0104293_17	PHROG	phrog_674	NA	unknown function
UHGV-0104293_17	UniRef90	UniRef90_A0A373MX71	NA	NA
UHGV-0104293_17	eggNOG-mapper	1304866.K413DRAFT_1195	NA	NA
UHGV-0104293_17	Pfam	PF07083	NA	DUF1351
UHGV-0104293_17	Structural annotation	PF07083	NA	NA
UHGV-0104293_18	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0104293_18	UniRef90	UniRef90_UPI001EDDFED5	ERF family protein	NA
UHGV-0104293_18	eggNOG-mapper	1298920.KI911353_gene4870	ERF superfamily	NA
UHGV-0104293_18	Pfam	PF04404	ERF superfamily	ERF
UHGV-0104293_18	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0104293_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0104293_19	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0104293_19	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0104293_20	PHROG	phrog_2113	NA	unknown function
UHGV-0104293_20	UniRef90	UniRef90_A0A357NGS2	HTH_11 domain-containing protein	NA
UHGV-0104293_20	Structural annotation	PF21715	NA	NA
UHGV-0104293_21	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0104293_21	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0104293_21	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0104293_22	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0104293_22	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0104293_22	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0104293_22	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0104293_23	Structural annotation	PF09889, MF_00649, NF001638, COG4068	NA	NA
UHGV-0104293_24	UniRef90	UniRef90_A0A373MX33	NA	NA
UHGV-0104293_24	Pfam	PF04448	NA	DUF551
UHGV-0104293_24	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0104293_28	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0104293_28	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0104293_28	UniRef90	UniRef90_UPI0018A95D39	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0104293_28	eggNOG-mapper	742765.HMPREF9457_03403	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0104293_28	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0104293_28	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0104293_28	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0104293_29	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0104293_29	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0104293_29	UniRef90	UniRef90_A0A373MWF0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0104293_29	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0104293_29	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0104293_29	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0104293_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0104293_29	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0104293_31	Structural annotation	PF20769, COG2250	NA	NA
UHGV-0104293_33	UniRef90	UniRef90_UPI0006D0B862	NA	NA
UHGV-0104293_33	Pfam	PF04448	NA	DUF551
UHGV-0104293_34	PHROG	phrog_20593	NA	unknown function
UHGV-0104293_36	PHROG	phrog_22292	NA	unknown function
UHGV-0104293_41	Structural annotation	PF17224, COG3354	NA	NA
UHGV-0104293_42	PHROG	phrog_8680	NA	unknown function
UHGV-0104293_42	UniRef90	UniRef90_A0A373MX42	NA	NA
UHGV-0104293_42	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0104293_42	Pfam	PF14386	NA	DUF4417
UHGV-0104293_42	Structural annotation	PF14386	NA	NA
UHGV-0104293_44	PHROG	phrog_9479	NA	unknown function
UHGV-0104293_44	eggNOG-mapper	633697.EubceDRAFT1_2041	NA	NA
UHGV-0104293_44	Structural annotation	PF15529	NA	NA
UHGV-0104293_46	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0104293_46	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0104293_46	UniRef90	UniRef90_A0A373MWB9	Terminase small subunit	NA
UHGV-0104293_46	eggNOG-mapper	1235800.C819_00494	Terminase small subunit	NA
UHGV-0104293_46	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0104293_46	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0104293_46	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0104293_47	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104293_47	PHROG	phrog_10250	NA	unknown function
UHGV-0104293_47	UniRef90	UniRef90_A0A373MY72	PBSX family phage terminase large subunit	NA
UHGV-0104293_47	eggNOG-mapper	397290.C810_05187	Phage terminase large subunit	NA
UHGV-0104293_47	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0104293_47	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0104293_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104293_47	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0104293_48	PHROG	phrog_533	portal protein	head and packaging
UHGV-0104293_48	UniRef90	UniRef90_A0A173R9C0	Phage portal protein, putative, A118 family	NA
UHGV-0104293_48	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0104293_48	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0104293_50	PHROG	phrog_1048	NA	unknown function
UHGV-0104293_50	UniRef90	UniRef90_A0A373MX10	NA	NA
UHGV-0104293_50	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0104293_50	Pfam	PF11195	NA	DUF2829
UHGV-0104293_50	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0104293_50	Structural annotation	PF11195	NA	NA
UHGV-0104293_51	PHROG	phrog_2428	NA	unknown function
UHGV-0104293_51	UniRef90	UniRef90_A0A396QA65	ABC transporter ATPase	NA
UHGV-0104293_51	eggNOG-mapper	632245.CLP_1645	NA	NA
UHGV-0104293_51	dbAPIS	APIS024	Tad1 proteins are not an enzymes, but are 'sponges' that bind and sequester the immune signaling molecule (cyclic ADP-ribose or gcADPR) produced by TIR-domain proteins, thus decoupling phage sensing from immune effector activation and rendering Thoeris inactive.	NA
UHGV-0104293_53	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0104293_53	UniRef90	UniRef90_A0A373MXM0	Phage capsid protein	NA
UHGV-0104293_53	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0104293_53	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0104293_53	COG	COG2369	NA	NA
UHGV-0104293_53	Structural annotation	PF06152	NA	NA
UHGV-0104293_54	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0104293_54	UniRef90	UniRef90_R6NCU4	Putative scaffolding protein	NA
UHGV-0104293_54	eggNOG-mapper	397290.C810_05223	Phage minor structural protein GP20	NA
UHGV-0104293_54	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0104293_54	Structural annotation	PF06810	NA	NA
UHGV-0104293_55	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-0104293_55	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0104293_57	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0104293_57	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0104293_59	PHROG	phrog_3366	NA	unknown function
UHGV-0104293_59	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0104293_59	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0104293_60	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0104293_60	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0104293_60	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0104293_60	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0104293_60	Structural annotation	PF11114	NA	NA
UHGV-0104293_61	PHROG	phrog_3266	tail completion	connector
UHGV-0104293_61	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0104293_61	Structural annotation	PF12691	NA	NA
UHGV-0104293_62	PHROG	phrog_3099	NA	unknown function
UHGV-0104293_62	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-0104293_62	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0104293_63	PHROG	phrog_11299	NA	unknown function
UHGV-0104293_63	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0104293_63	Structural annotation	PF10666	NA	NA
UHGV-0104293_64	PHROG	phrog_706	NA	unknown function
UHGV-0104293_64	UniRef90	UniRef90_UPI00156F9D1C	Gp15 family bacteriophage protein	NA
UHGV-0104293_64	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0104293_64	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0104293_64	Structural annotation	PF06854	NA	NA
UHGV-0104293_65	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0104293_65	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0104293_65	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0104293_65	COG	COG1511	NA	NA
UHGV-0104293_66	PHROG	phrog_1194	NA	unknown function
UHGV-0104293_66	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0104293_67	PHROG	phrog_6616	tail protein	tail
UHGV-0104293_67	UniRef90	UniRef90_UPI0015714EA8	tail fiber domain-containing protein	NA
UHGV-0104293_67	eggNOG-mapper	357276.EL88_12830	Phage minor structural protein	NA
UHGV-0104293_67	COG	COG4926	Phage-related protein	NA
UHGV-0104293_67	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0104293_69	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0104293_71	eggNOG-mapper	97139.C824_00239	NA	NA
UHGV-0104293_71	Structural annotation	PF19789	NA	NA
UHGV-0104293_72	eggNOG-mapper	97139.C824_00240	NA	NA
UHGV-0104293_72	Structural annotation	PF05635, NF008912	NA	NA
UHGV-0104293_73	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0104293_73	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0104293_73	UniRef90	UniRef90_A0A349YHH5	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0104293_73	eggNOG-mapper	665950.HMPREF1025_01556	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0104293_73	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0104293_73	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0104293_73	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0104293_73	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0104293_74	PHROG	phrog_17180	NA	unknown function
UHGV-0104293_74	eggNOG-mapper	1200557.JHWV01000006_gene1699	NA	NA
UHGV-0104293_75	PHROG	phrog_937	hemolysin	other
UHGV-0104293_75	eggNOG-mapper	411459.RUMOBE_01081	NA	NA
UHGV-0104293_76	PHROG	phrog_1129	holin	lysis
UHGV-0104293_76	UniRef90	UniRef90_A0A893W7Y5	Phage holin family protein	NA
UHGV-0104293_76	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0104293_76	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0104293_76	Structural annotation	PF16079	NA	NA
UHGV-0104293_77	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-0104293_78	KOfam	K07273	acm; lysozyme	NA
UHGV-0104293_78	PHROG	phrog_291	endolysin	lysis
UHGV-0104293_78	UniRef90	UniRef90_D4M5A7	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0104293_78	eggNOG-mapper	537007.BLAHAN_04972	Glycosyl hydrolases family 25	NA
UHGV-0104293_78	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0104293_78	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0104293_78	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA