UHGV-0104306

Genome information

Genome length 36,737 bps

CDS count 63

Completeness 92.18% (high-quality)

geNomad score 0.9677

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104306
vOTU ID	vOTU-010430
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_237186
BioSample	SAMEA3708676
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9677
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.58
Jumbo phage	No

Genome content
Genome length	36,737 bps
GC content	41.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	91.12%
Average CDS length	536.81 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104306_1	eggNOG-mapper	1256908.HMPREF0373_01541	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0104306_1	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0104306_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0104306_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0104306_2	UniRef90	UniRef90_A0A374JP43	Recombinase family protein	NA
UHGV-0104306_2	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0104306_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0104306_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0104306_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0104306_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0104306_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0104306_3	eggNOG-mapper	431943.CKL_1915	NA	NA
UHGV-0104306_5	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0104306_5	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0104306_5	UniRef90	UniRef90_A0A414P9D9	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0104306_5	eggNOG-mapper	97139.C824_05961	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0104306_5	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0104306_5	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0104306_5	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0104306_6	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0104306_6	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0104306_6	UniRef90	UniRef90_A0A414P9D1	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0104306_6	eggNOG-mapper	1120998.AUFC01000028_gene2410	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0104306_6	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0104306_6	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0104306_6	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0104306_7	eggNOG-mapper	622312.ROSEINA2194_00018	NA	NA
UHGV-0104306_8	PHROG	phrog_87	metallo-protease	other
UHGV-0104306_8	UniRef90	UniRef90_A0A2V1JW48	Membrane protein	NA
UHGV-0104306_8	eggNOG-mapper	742723.HMPREF9477_00938	Zn peptidase	NA
UHGV-0104306_8	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0104306_8	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0104306_8	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0104306_9	eggNOG-mapper	411461.DORFOR_00034	NA	NA
UHGV-0104306_9	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0104306_10	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0104306_10	UniRef90	UniRef90_UPI0018A1266A	helix-turn-helix transcriptional regulator	NA
UHGV-0104306_10	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-0104306_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0104306_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104306_10	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0104306_11	UniRef90	UniRef90_A0A416GY85	XRE family transcriptional regulator	NA
UHGV-0104306_11	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0104306_13	PHROG	phrog_2232	NA	unknown function
UHGV-0104306_13	UniRef90	UniRef90_UPI000D647EAE	NA	NA
UHGV-0104306_13	eggNOG-mapper	357809.Cphy_2977	NA	NA
UHGV-0104306_13	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0104306_13	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0104306_17	PHROG	phrog_585	NA	unknown function
UHGV-0104306_17	UniRef90	UniRef90_UPI0009FD16BA	NA	NA
UHGV-0104306_17	eggNOG-mapper	97138.C820_00628	NA	NA
UHGV-0104306_17	Pfam	PF10711	NA	DUF2513
UHGV-0104306_17	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0104306_18	PHROG	phrog_2316	NA	unknown function
UHGV-0104306_18	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0104306_18	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0104306_18	Pfam	PF16475	NA	DUF5052
UHGV-0104306_18	Structural annotation	PF16475, MF_00436, NF033216	NA	NA
UHGV-0104306_20	Structural annotation	PF16311, NF002796	NA	NA
UHGV-0104306_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0104306_22	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0104306_22	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0104306_22	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0104306_23	PHROG	phrog_824	NA	unknown function
UHGV-0104306_23	UniRef90	UniRef90_A0A2V1JQ26	Nuclease	NA
UHGV-0104306_23	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-0104306_23	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0104306_25	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0104306_25	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0104306_25	UniRef90	UniRef90_A0A2V1JNX7	AAA_31 domain-containing protein	NA
UHGV-0104306_25	eggNOG-mapper	411470.RUMGNA_00210	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0104306_25	Pfam	PF13614	AAA domain	AAA_31
UHGV-0104306_25	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0104306_25	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0104306_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0104306_26	PHROG	phrog_15982	NA	unknown function
UHGV-0104306_26	UniRef90	UniRef90_UPI000D64D89A	ParB/Srx family N-terminal domain-containing protein	NA
UHGV-0104306_26	eggNOG-mapper	411470.RUMGNA_00213	ParB-like nuclease domain	NA
UHGV-0104306_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0104306_26	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0104306_27	PHROG	phrog_17690	NA	unknown function
UHGV-0104306_27	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0104306_27	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-0104306_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0104306_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0104306_29	UniRef90	UniRef90_A0A2V1JTS6	Single-stranded DNA-binding protein	NA
UHGV-0104306_29	eggNOG-mapper	1235790.C805_03410	Single-stranded DNA-binding protein	NA
UHGV-0104306_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0104306_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0104306_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0104306_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0104306_29	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0104306_31	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0104306_33	UniRef90	UniRef90_R5TJQ4	Carbamoyl-phosphate synthase L chain ATP-binding protein	NA
UHGV-0104306_34	PHROG	phrog_7704	NA	unknown function
UHGV-0104306_34	UniRef90	UniRef90_UPI000D6522D3	NA	NA
UHGV-0104306_34	Pfam	PF04448	NA	DUF551
UHGV-0104306_36	PHROG	phrog_21026	NA	unknown function
UHGV-0104306_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0104306_38	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0104306_38	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0104306_38	Structural annotation	PF02996	NA	NA
UHGV-0104306_39	UniRef90	UniRef90_A0A6L9HM07	Chemotaxis protein	NA
UHGV-0104306_39	eggNOG-mapper	1232452.BAIB02000007_gene1632	NA	NA
UHGV-0104306_39	Structural annotation	NF008671, COG4710	NA	NA
UHGV-0104306_40	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0104306_40	PHROG	phrog_11157	NA	unknown function
UHGV-0104306_40	UniRef90	UniRef90_A0A173UNA5	Bacillopeptidase F	NA
UHGV-0104306_40	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0104306_40	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0104306_40	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0104306_40	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-0104306_40	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0104306_40	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0104306_41	PHROG	phrog_32322	NA	unknown function
UHGV-0104306_41	UniRef90	UniRef90_UPI000D659BBE	PF13754 domain-containing protein	NA
UHGV-0104306_41	eggNOG-mapper	1256908.HMPREF0373_00675	NA	NA
UHGV-0104306_41	Pfam	PF13754	NA	Big_3_4
UHGV-0104306_41	Structural annotation	PF13754	NA	NA
UHGV-0104306_42	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0104306_43	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104306_43	UniRef90	UniRef90_A0A371ARK1	HNH endonuclease	NA
UHGV-0104306_43	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0104306_43	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0104306_44	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0104306_44	UniRef90	UniRef90_UPI00156D89BA	P27 family phage terminase small subunit	NA
UHGV-0104306_44	eggNOG-mapper	610130.Closa_0740	NA	NA
UHGV-0104306_44	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0104306_44	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0104306_45	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0104306_45	UniRef90	UniRef90_A0A415MTC4	Terminase large subunit	NA
UHGV-0104306_45	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0104306_45	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0104306_45	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0104306_45	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0104306_45	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0104306_46	PHROG	phrog_12	portal protein	head and packaging
UHGV-0104306_46	UniRef90	UniRef90_A0A415MTC5	Phage portal protein	NA
UHGV-0104306_46	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0104306_46	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0104306_46	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0104306_46	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0104306_47	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0104306_47	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0104306_47	UniRef90	UniRef90_A0A2V1JME2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0104306_47	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0104306_47	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0104306_47	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0104306_47	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0104306_48	PHROG	phrog_10	major head protein	head and packaging
UHGV-0104306_48	UniRef90	UniRef90_A0A415MTA6	Phage major capsid protein	NA
UHGV-0104306_48	eggNOG-mapper	1384484.AEQU_1180	Phage capsid family	NA
UHGV-0104306_48	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0104306_48	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0104306_48	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0104306_48	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0104306_49	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0104306_50	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-0104306_50	eggNOG-mapper	1384484.AEQU_1178	NA	NA
UHGV-0104306_50	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0104306_51	eggNOG-mapper	1121866.AUGK01000006_gene883	NA	NA
UHGV-0104306_51	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0104306_52	PHROG	phrog_5509	neck protein	connector
UHGV-0104306_52	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-0104306_52	eggNOG-mapper	1450694.BTS2_0537	NA	NA
UHGV-0104306_52	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0104306_53	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-0104306_53	eggNOG-mapper	1121866.AUGK01000006_gene884	NA	NA
UHGV-0104306_53	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0104306_54	PHROG	phrog_933	NA	unknown function
UHGV-0104306_55	eggNOG-mapper	1384484.AEQU_1173	NA	NA
UHGV-0104306_57	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0104306_57	PHROG	phrog_23464	NA	unknown function
UHGV-0104306_57	UniRef90	UniRef90_F3BAC7	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0104306_57	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0104306_57	COG	COG5412	Phage-related protein	NA
UHGV-0104306_58	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0104306_58	UniRef90	UniRef90_A0A415MTE8	Phage tail protein	NA
UHGV-0104306_58	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0104306_58	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0104306_59	PHROG	phrog_538	minor tail protein	tail
UHGV-0104306_59	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0104306_59	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0104306_59	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0104306_59	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0104306_60	PHROG	phrog_9994	NA	unknown function
UHGV-0104306_60	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0104306_60	Structural annotation	PF20747	NA	NA
UHGV-0104306_61	PHROG	phrog_1863	NA	unknown function
UHGV-0104306_61	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0104306_62	PHROG	phrog_443	holin	lysis
UHGV-0104306_62	UniRef90	UniRef90_A0A2V1JQV6	Membrane protein	NA
UHGV-0104306_62	eggNOG-mapper	397288.C806_00114	Putative lactococcus lactis phage r1t holin	NA
UHGV-0104306_62	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0104306_62	Structural annotation	PF16945	NA	NA
UHGV-0104306_63	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0104306_63	PHROG	phrog_670	endolysin	lysis
UHGV-0104306_63	UniRef90	UniRef90_UPI000D6559B0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0104306_63	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-0104306_63	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0104306_63	Pfam	PF21540	Choline-binding repeat	Choline_bind_4
UHGV-0104306_63	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0104306_63	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA