UHGV-0104319

Genome information

Genome length 39,321 bps

CDS count 73

Completeness 100.00% (complete)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104319
vOTU ID	vOTU-045484
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_242663
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.34
Jumbo phage	No

Genome content
Genome length	39,321 bps
GC content	55.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	90.01%
Average CDS length	489.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104319_2	PHROG	phrog_134	NA	unknown function
UHGV-0104319_2	UniRef90	UniRef90_A0A356L0N0	XkdX family protein	NA
UHGV-0104319_2	eggNOG-mapper	1297617.JPJD01000099_gene2170	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0104319_2	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0104319_2	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0104319_4	UniRef90	UniRef90_A0A096B066	Mtd_N domain-containing protein	NA
UHGV-0104319_5	PHROG	phrog_18725	NA	unknown function
UHGV-0104319_5	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0104319_5	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0104319_6	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0104319_6	PHROG	phrog_11157	NA	unknown function
UHGV-0104319_6	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0104319_6	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-0104319_6	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0104319_6	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0104319_6	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0104319_6	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0104319_8	PHROG	phrog_13879	NA	unknown function
UHGV-0104319_8	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0104319_8	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0104319_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0104319_10	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0104319_10	UniRef90	UniRef90_A0A3D1JBH2	Phage tail protein (Fragment)	NA
UHGV-0104319_10	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0104319_10	COG	COG1511	NA	NA
UHGV-0104319_10	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0104319_11	PHROG	phrog_7115	NA	unknown function
UHGV-0104319_11	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-0104319_11	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-0104319_11	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0104319_11	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0104319_13	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0104319_14	PHROG	phrog_885	major tail protein	tail
UHGV-0104319_14	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0104319_14	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0104319_14	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0104319_15	PHROG	phrog_17405	head protein	head and packaging
UHGV-0104319_15	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0104319_15	Structural annotation	PF11367	NA	NA
UHGV-0104319_16	PHROG	phrog_17977	NA	unknown function
UHGV-0104319_16	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0104319_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0104319_18	PHROG	phrog_544	major head protein	head and packaging
UHGV-0104319_18	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0104319_18	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0104319_18	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0104319_18	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0104319_19	Structural annotation	PF06810	NA	NA
UHGV-0104319_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0104319_20	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0104319_20	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0104319_20	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0104319_21	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0104319_21	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0104319_21	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0104319_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0104319_21	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0104319_21	COG	COG2369	NA	NA
UHGV-0104319_21	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0104319_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0104319_22	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0104319_22	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0104319_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0104319_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0104319_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104319_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0104319_23	UniRef90	UniRef90_A0A4D7AZ70	PBSX family phage terminase large subunit	NA
UHGV-0104319_23	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0104319_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0104319_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0104319_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0104319_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104319_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0104319_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0104319_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0104319_24	UniRef90	UniRef90_UPI001D05F697	terminase small subunit	NA
UHGV-0104319_24	eggNOG-mapper	697281.Mahau_0566	Terminase Small Subunit	NA
UHGV-0104319_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0104319_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0104319_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0104319_26	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0104319_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104319_26	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0104319_26	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0104319_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104319_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104319_26	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0104319_27	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0104319_28	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0104319_31	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0104319_31	UniRef90	UniRef90_UPI000518F9A3	NA	NA
UHGV-0104319_31	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-0104319_31	Pfam	PF06356	NA	DUF1064
UHGV-0104319_31	Structural annotation	PF06356	NA	NA
UHGV-0104319_33	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0104319_35	PHROG	phrog_38832	NA	unknown function
UHGV-0104319_35	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0104319_38	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0104319_38	UniRef90	UniRef90_UPI001CBD79D0	DNA cytosine methyltransferase	NA
UHGV-0104319_38	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0104319_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0104319_39	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0104319_39	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0104319_39	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0104319_39	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0104319_39	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0104319_39	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0104319_39	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0104319_40	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0104319_40	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0104319_40	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0104319_40	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0104319_40	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0104319_40	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0104319_40	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0104319_41	PHROG	phrog_15768	NA	unknown function
UHGV-0104319_41	UniRef90	UniRef90_UPI00189C2664	NA	NA
UHGV-0104319_41	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0104319_41	Pfam	PF19808	NA	DUF6291
UHGV-0104319_41	Structural annotation	PF19808	NA	NA
UHGV-0104319_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0104319_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0104319_43	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-0104319_43	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0104319_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0104319_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0104319_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0104319_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0104319_43	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0104319_44	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0104319_44	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0104319_44	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0104319_44	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0104319_44	Pfam	PF03837	RecT family	RecT
UHGV-0104319_44	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0104319_44	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0104319_44	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0104319_45	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104319_45	UniRef90	UniRef90_U2SK35	YqaJ viral recombinase family protein	NA
UHGV-0104319_45	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-0104319_45	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0104319_45	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0104319_45	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0104319_45	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0104319_47	eggNOG-mapper	1160721.RBI_II00485	NA	NA
UHGV-0104319_47	Structural annotation	PF21715, MF_01804, TIGR00281, COG1386	NA	NA
UHGV-0104319_48	PHROG	phrog_22529	NA	unknown function
UHGV-0104319_48	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0104319_48	eggNOG-mapper	537007.BLAHAN_05080	3D domain	NA
UHGV-0104319_48	Pfam	PF06725	3D domain	3D
UHGV-0104319_48	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0104319_48	Structural annotation	PF06725, MF_02071, NF040675, COG3584	NA	NA
UHGV-0104319_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104319_50	UniRef90	UniRef90_A0A328UFC2	HTH cro/C1-type domain-containing protein	NA
UHGV-0104319_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104319_50	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0104319_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104319_53	UniRef90	UniRef90_Q2RLS1	Transcriptional regulator, XRE family	NA
UHGV-0104319_53	eggNOG-mapper	264732.Moth_0284	Helix-turn-helix XRE-family like proteins	NA
UHGV-0104319_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104319_53	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0104319_53	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0104319_54	Structural annotation	PF03885	NA	NA
UHGV-0104319_59	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0104319_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104319_59	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0104319_59	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0104319_60	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0104319_60	PHROG	phrog_95	integrase	integration and excision
UHGV-0104319_60	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0104319_60	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0104319_60	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0104319_60	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0104319_60	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0104319_60	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0104319_61	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0104319_62	PHROG	phrog_28802	NA	unknown function
UHGV-0104319_63	PHROG	phrog_20016	NA	unknown function
UHGV-0104319_63	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0104319_63	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0104319_63	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0104319_65	PHROG	phrog_16490	NA	unknown function
UHGV-0104319_65	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0104319_66	PHROG	phrog_22984	NA	unknown function
UHGV-0104319_67	PHROG	phrog_21718	NA	unknown function
UHGV-0104319_67	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0104319_68	PHROG	phrog_3754	NA	unknown function
UHGV-0104319_68	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0104319_70	PHROG	phrog_21357	endolysin	lysis
UHGV-0104319_70	UniRef90	UniRef90_G9YP37	SLH domain-containing protein	NA
UHGV-0104319_70	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0104319_70	Pfam	PF05257	CHAP domain	CHAP
UHGV-0104319_70	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0104319_70	COG	COG1388	LysM repeat	NA
UHGV-0104319_70	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0104319_71	PHROG	phrog_13256	NA	unknown function
UHGV-0104319_71	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0104319_72	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-0104319_72	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0104319_73	PHROG	phrog_4105	NA	unknown function