UHGV-0104320

Genome information

Genome length 38,485 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104320
vOTU ID	vOTU-008576
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_270241
BioSample	SAMEA3879583
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.94
Jumbo phage	No

Genome content
Genome length	38,485 bps
GC content	37.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.30%
Average CDS length	660.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104320_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0104320_1	PHROG	phrog_291	endolysin	lysis
UHGV-0104320_1	UniRef90	UniRef90_A0A174PB89	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0104320_1	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-0104320_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0104320_1	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0104320_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0104320_2	PHROG	phrog_1129	holin	lysis
UHGV-0104320_2	UniRef90	UniRef90_UPI000E5CE6BF	phage holin family protein	NA
UHGV-0104320_2	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0104320_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0104320_2	Structural annotation	PF06946	NA	NA
UHGV-0104320_3	PHROG	phrog_1863	NA	unknown function
UHGV-0104320_3	UniRef90	UniRef90_UPI001D0865D2	hemolysin XhlA family protein	NA
UHGV-0104320_3	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0104320_4	eggNOG-mapper	536227.CcarbDRAFT_4479	Belongs to the 'phage' integrase family	NA
UHGV-0104320_4	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0104320_4	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0104320_7	PHROG	phrog_2566	NA	unknown function
UHGV-0104320_8	PHROG	phrog_6616	tail protein	tail
UHGV-0104320_8	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0104320_8	eggNOG-mapper	1499683.CCFF01000014_gene3896	Phage minor structural protein	NA
UHGV-0104320_8	COG	COG4926	Phage-related protein	NA
UHGV-0104320_8	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0104320_9	PHROG	phrog_1401	NA	unknown function
UHGV-0104320_9	UniRef90	UniRef90_UPI0007099B7A	NA	NA
UHGV-0104320_9	eggNOG-mapper	1294142.CINTURNW_1705	NA	NA
UHGV-0104320_9	Structural annotation	PF07761	NA	NA
UHGV-0104320_10	PHROG	phrog_1194	NA	unknown function
UHGV-0104320_10	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0104320_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0104320_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0104320_11	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0104320_11	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0104320_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0104320_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0104320_12	PHROG	phrog_8355	NA	unknown function
UHGV-0104320_12	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0104320_12	eggNOG-mapper	1117108.PAALTS15_13522	Bacteriophage Gp15 protein	NA
UHGV-0104320_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0104320_12	Structural annotation	PF06854	NA	NA
UHGV-0104320_13	PHROG	phrog_8300	NA	unknown function
UHGV-0104320_13	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0104320_13	Structural annotation	PF06896	NA	NA
UHGV-0104320_14	PHROG	phrog_820	major tail protein	tail
UHGV-0104320_14	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0104320_14	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0104320_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0104320_15	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0104320_15	UniRef90	UniRef90_UPI00164BAA81	minor capsid protein	NA
UHGV-0104320_15	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0104320_15	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0104320_15	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0104320_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0104320_16	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0104320_17	PHROG	phrog_8710	NA	unknown function
UHGV-0104320_17	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0104320_17	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0104320_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0104320_18	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0104320_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0104320_19	UniRef90	UniRef90_A0A3D5M0U8	Phage capsid protein	NA
UHGV-0104320_19	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0104320_19	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0104320_20	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0104320_20	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0104320_21	PHROG	phrog_872	NA	unknown function
UHGV-0104320_21	UniRef90	UniRef90_A0A413P9Z7	NA	NA
UHGV-0104320_21	eggNOG-mapper	573413.Spirs_2170	NA	NA
UHGV-0104320_21	Pfam	PF11195	NA	DUF2829
UHGV-0104320_21	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0104320_21	Structural annotation	PF11195	NA	NA
UHGV-0104320_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0104320_23	UniRef90	UniRef90_A0A413YU28	Minor capsid protein	NA
UHGV-0104320_23	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0104320_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0104320_23	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0104320_23	Structural annotation	PF06152	NA	NA
UHGV-0104320_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0104320_24	UniRef90	UniRef90_A0A413YU90	Phage portal protein	NA
UHGV-0104320_24	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0104320_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0104320_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104320_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0104320_25	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-0104320_25	eggNOG-mapper	1294142.CINTURNW_1023	Phage terminase, large subunit, PBSX family	NA
UHGV-0104320_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0104320_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104320_25	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0104320_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0104320_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0104320_26	UniRef90	UniRef90_A0A413YU49	Terminase small subunit	NA
UHGV-0104320_26	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-0104320_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0104320_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0104320_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0104320_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0104320_27	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0104320_27	Structural annotation	PF02996	NA	NA
UHGV-0104320_28	PHROG	phrog_625	NA	unknown function
UHGV-0104320_28	UniRef90	UniRef90_A0A413YU40	ASCH domain-containing protein	NA
UHGV-0104320_28	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0104320_28	Structural annotation	PF12961, COG2028	NA	NA
UHGV-0104320_29	PHROG	phrog_20593	NA	unknown function
UHGV-0104320_32	PHROG	phrog_8684	NA	unknown function
UHGV-0104320_32	UniRef90	UniRef90_A0A413YU53	YopX domain-containing protein	NA
UHGV-0104320_32	eggNOG-mapper	476272.RUMHYD_03337	NA	NA
UHGV-0104320_32	Pfam	PF09643	YopX protein	YopX
UHGV-0104320_32	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0104320_33	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0104320_33	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104320_33	UniRef90	UniRef90_A0A413YU08	HNH endonuclease	NA
UHGV-0104320_33	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0104320_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0104320_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0104320_33	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0104320_35	PHROG	phrog_15077	NA	unknown function
UHGV-0104320_35	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0104320_35	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0104320_35	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0104320_36	PHROG	phrog_8470	NA	unknown function
UHGV-0104320_36	UniRef90	UniRef90_UPI0018999714	PcfJ domain-containing protein	NA
UHGV-0104320_36	eggNOG-mapper	742733.HMPREF9469_00219	PcfJ-like protein	NA
UHGV-0104320_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0104320_36	Structural annotation	PF14284	NA	NA
UHGV-0104320_37	PHROG	phrog_4433	NA	unknown function
UHGV-0104320_37	eggNOG-mapper	742733.HMPREF9469_00220	regulation of DNA-templated transcription, elongation	NA
UHGV-0104320_37	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0104320_37	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0104320_38	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0104320_40	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0104320_40	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0104320_40	UniRef90	UniRef90_A0A413YU26	RNase H type-1 domain-containing protein	NA
UHGV-0104320_40	eggNOG-mapper	498848.TaqDRAFT_4493	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0104320_40	Pfam	PF00075	RNase H	RNase_H
UHGV-0104320_40	COG	COG0328	Ribonuclease HI	NA
UHGV-0104320_40	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0104320_41	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0104320_41	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0104320_41	eggNOG-mapper	742741.HMPREF9475_00404	NA	NA
UHGV-0104320_41	Structural annotation	PF21578	NA	NA
UHGV-0104320_45	Structural annotation	NF040556	NA	NA
UHGV-0104320_48	UniRef90	UniRef90_A0A3B9CCY2	HTH cro/C1-type domain-containing protein	NA
UHGV-0104320_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0104320_49	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0104320_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104320_49	UniRef90	UniRef90_A0A828T008	HTH cro/C1-type domain-containing protein	NA
UHGV-0104320_49	eggNOG-mapper	411470.RUMGNA_03101	transcriptional regulator, XRE family	NA
UHGV-0104320_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0104320_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104320_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0104320_49	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0104320_50	PHROG	phrog_87	metallo-protease	other
UHGV-0104320_50	UniRef90	UniRef90_A0A3B9CDB4	Peptidase_M78 domain-containing protein	NA
UHGV-0104320_50	eggNOG-mapper	742723.HMPREF9477_00938	Zn peptidase	NA
UHGV-0104320_50	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0104320_50	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0104320_50	Structural annotation	PF06114, COG3800	NA	NA
UHGV-0104320_51	PHROG	phrog_1847	NA	unknown function
UHGV-0104320_51	UniRef90	UniRef90_R9JJN1	T5orf172 domain-containing protein	NA
UHGV-0104320_51	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0104320_51	Pfam	PF13250	NA	DUF4041
UHGV-0104320_51	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0104320_51	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0104320_51	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-0104320_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0104320_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0104320_52	UniRef90	UniRef90_A0A413YU13	Recombinase family protein	NA
UHGV-0104320_52	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0104320_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0104320_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-0104320_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0104320_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0104320_52	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0104320_53	PHROG	phrog_5763	NA	unknown function
UHGV-0104320_53	eggNOG-mapper	1033744.CAEL01000026_gene1411	NA	NA
UHGV-0104320_54	PHROG	phrog_1281	NA	unknown function
UHGV-0104320_54	UniRef90	UniRef90_UPI00164A9B39	NA	NA
UHGV-0104320_54	eggNOG-mapper	1508644.SFBmNL_01513	NA	NA
UHGV-0104320_54	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0104320_54	COG	COG3600	NA	NA
UHGV-0104320_54	Structural annotation	PF13274, COG3600	NA	NA