UHGV-0104325

Genome information

Genome length 41,255 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104325
vOTU ID	vOTU-045485
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_242662
BioSample	SAMEA3708826
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.41
Jumbo phage	No

Genome content
Genome length	41,255 bps
GC content	58.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.63%
Average CDS length	667.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104325_2	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0104325_2	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0104325_2	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0104325_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104325_3	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0104325_3	UniRef90	UniRef90_UPI0006875436	phage terminase large subunit	NA
UHGV-0104325_3	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0104325_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0104325_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104325_3	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0104325_4	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0104325_4	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0104325_4	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0104325_4	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0104325_4	Structural annotation	PF16677	NA	NA
UHGV-0104325_6	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0104325_6	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0104325_6	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0104325_7	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0104325_7	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0104325_7	UniRef90	UniRef90_UPI001D0839DE	site-specific DNA-methyltransferase	NA
UHGV-0104325_7	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0104325_7	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0104325_7	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0104325_7	COG	COG0863	DNA modification methylase	NA
UHGV-0104325_7	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0104325_8	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0104325_8	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0104325_8	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0104325_8	Structural annotation	PF08271	NA	NA
UHGV-0104325_10	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104325_10	eggNOG-mapper	1423807.BACO01000037_gene1103	NA	NA
UHGV-0104325_12	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0104325_12	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0104325_12	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-0104325_12	Pfam	PF06356	NA	DUF1064
UHGV-0104325_12	Structural annotation	PF06356	NA	NA
UHGV-0104325_14	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0104325_14	UniRef90	UniRef90_UPI001B11004B	Lar family restriction alleviation protein	NA
UHGV-0104325_14	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0104325_14	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0104325_16	PHROG	phrog_38832	NA	unknown function
UHGV-0104325_17	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0104325_17	UniRef90	UniRef90_A0A413FXK8	NA	NA
UHGV-0104325_17	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0104325_17	Pfam	PF14359	NA	DUF4406
UHGV-0104325_17	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0104325_17	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-0104325_18	PHROG	phrog_3136	NA	unknown function
UHGV-0104325_18	UniRef90	UniRef90_A0A843H9M8	ASCH domain-containing protein	NA
UHGV-0104325_18	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0104325_18	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0104325_20	Pfam	PF04448	NA	DUF551
UHGV-0104325_23	Structural annotation	PF05082	NA	NA
UHGV-0104325_25	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0104325_25	UniRef90	UniRef90_A0A1Y3RFS1	XRE family transcriptional regulator	NA
UHGV-0104325_26	Structural annotation	PF10548	NA	NA
UHGV-0104325_29	UniRef90	UniRef90_UPI000951234C	helix-turn-helix domain-containing protein	NA
UHGV-0104325_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104325_29	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0104325_30	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0104325_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104325_30	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0104325_30	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0104325_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104325_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104325_30	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0104325_31	KOfam	K05516	cbpA; curved DNA-binding protein	NA
UHGV-0104325_31	PHROG	phrog_14336	NA	unknown function
UHGV-0104325_31	UniRef90	UniRef90_UPI00193A3DF3	dnaJ homolog subfamily B member 6-A-like	NA
UHGV-0104325_31	eggNOG-mapper	401526.TcarDRAFT_1254	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	NA
UHGV-0104325_31	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0104325_31	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0104325_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104325_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0104325_33	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0104325_34	KOfam	K14059	int; integrase	NA
UHGV-0104325_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0104325_34	UniRef90	UniRef90_A0A212JT52	Putative Integrase family protein	NA
UHGV-0104325_34	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0104325_34	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0104325_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104325_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0104325_34	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0104325_35	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0104325_35	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0104325_36	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0104325_37	PHROG	phrog_16490	NA	unknown function
UHGV-0104325_37	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0104325_39	UniRef90	UniRef90_UPI00164EA432	SH3 domain-containing protein	NA
UHGV-0104325_39	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0104325_39	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0104325_39	Structural annotation	NF033743	NA	NA
UHGV-0104325_40	PHROG	phrog_6918	holin	lysis
UHGV-0104325_40	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0104325_40	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0104325_40	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0104325_40	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0104325_44	PHROG	phrog_37900	NA	unknown function
UHGV-0104325_44	UniRef90	UniRef90_R5IRZ6	NA	NA
UHGV-0104325_44	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0104325_44	Pfam	PF19789	NA	DUF6273
UHGV-0104325_44	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0104325_44	Structural annotation	PF19789	NA	NA
UHGV-0104325_45	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0104325_45	PHROG	phrog_819	tail protein	tail
UHGV-0104325_45	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-0104325_45	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0104325_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0104325_46	Structural annotation	PF18962, NF011773	NA	NA
UHGV-0104325_47	PHROG	phrog_33872	NA	unknown function
UHGV-0104325_47	eggNOG-mapper	693746.OBV_19740	NA	NA
UHGV-0104325_48	PHROG	phrog_22978	NA	unknown function
UHGV-0104325_48	eggNOG-mapper	1408437.JNJN01000039_gene389	heme binding	NA
UHGV-0104325_48	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0104325_48	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0104325_49	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-0104325_49	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0104325_50	PHROG	phrog_12105	NA	unknown function
UHGV-0104325_50	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0104325_52	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0104325_52	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0104325_52	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0104325_52	Pfam	PF13252	NA	DUF4043
UHGV-0104325_52	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0104325_52	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0104325_53	PHROG	phrog_13908	NA	unknown function
UHGV-0104325_53	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0104325_54	PHROG	phrog_156	portal protein	head and packaging
UHGV-0104325_54	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0104325_54	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0104325_56	PHROG	phrog_37329	NA	unknown function
UHGV-0104325_56	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0104325_56	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0104325_56	Structural annotation	PF17744, PF16655, MF_01905, NF038116, COG3979, COG2033	NA	NA
UHGV-0104325_57	eggNOG-mapper	537007.BLAHAN_05255	NA	NA