UHGV-0104401

Genome information

Genome length 22,448 bps

CDS count 42

Completeness 56.44% (medium-quality)

geNomad score 0.9523

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104401
vOTU ID	vOTU-027141
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_255276
BioSample	SAMEA3708805
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9523
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.19
Jumbo phage	No

Genome content
Genome length	22,448 bps
GC content	38.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	88.44%
Average CDS length	478.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104401_1	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0104401_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104401_2	PHROG	phrog_10250	NA	unknown function
UHGV-0104401_2	UniRef90	UniRef90_A0A1Q2C436	Terminase	NA
UHGV-0104401_2	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0104401_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0104401_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0104401_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104401_2	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0104401_3	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0104401_3	UniRef90	UniRef90_R0CLX0	Phage terminase small subunit	NA
UHGV-0104401_3	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-0104401_3	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0104401_3	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0104401_3	COG	COG5484	NA	NA
UHGV-0104401_3	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0104401_4	UniRef90	UniRef90_UPI00164A4990	restriction endonuclease	NA
UHGV-0104401_4	eggNOG-mapper	189425.PGRAT_23950	NA	NA
UHGV-0104401_4	Structural annotation	PF19363, PF04471, COG1787, COG3355	NA	NA
UHGV-0104401_5	Structural annotation	PF04381, MF_00194, NF001460, COG2974	NA	NA
UHGV-0104401_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0104401_6	UniRef90	UniRef90_A0A3D3U8Q6	Sigma70_r4 domain-containing protein	NA
UHGV-0104401_6	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0104401_6	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0104401_8	PHROG	phrog_7704	NA	unknown function
UHGV-0104401_8	UniRef90	UniRef90_UPI000D6522D3	NA	NA
UHGV-0104401_8	Pfam	PF04448	NA	DUF551
UHGV-0104401_9	UniRef90	UniRef90_R5TJQ4	Carbamoyl-phosphate synthase L chain ATP-binding protein	NA
UHGV-0104401_11	UniRef90	UniRef90_U2RIQ6	NA	NA
UHGV-0104401_11	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0104401_11	Pfam	PF04448	NA	DUF551
UHGV-0104401_11	Structural annotation	PF04448	NA	NA
UHGV-0104401_14	PHROG	phrog_23374	NA	unknown function
UHGV-0104401_14	eggNOG-mapper	1256908.HMPREF0373_00664	NA	NA
UHGV-0104401_15	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0104401_15	UniRef90	UniRef90_A0A3E5EKT4	NA	NA
UHGV-0104401_15	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0104401_15	Pfam	PF06048	NA	DUF927
UHGV-0104401_15	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0104401_15	COG	COG5519	NA	NA
UHGV-0104401_15	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0104401_16	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0104401_16	PHROG	phrog_11992	NA	unknown function
UHGV-0104401_16	UniRef90	UniRef90_A0A412QBZ4	DNA primase	NA
UHGV-0104401_16	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0104401_16	PADLOC	drt-UG29	DRT	DRT
UHGV-0104401_16	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0104401_16	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0104401_16	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0104401_17	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0104401_17	UniRef90	UniRef90_C0CLL8	ERCC4 domain-containing protein	NA
UHGV-0104401_17	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0104401_17	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0104401_17	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0104401_17	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0104401_18	PHROG	phrog_18107	NA	unknown function
UHGV-0104401_18	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0104401_18	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0104401_18	Structural annotation	PF05037	NA	NA
UHGV-0104401_19	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0104401_19	UniRef90	UniRef90_UPI001D06DB67	ATP-binding protein	NA
UHGV-0104401_19	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0104401_19	Pfam	PF13479	AAA domain	AAA_24
UHGV-0104401_19	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0104401_20	PHROG	phrog_3777	NA	unknown function
UHGV-0104401_20	UniRef90	UniRef90_UPI001C8F078D	NA	NA
UHGV-0104401_20	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-0104401_20	Structural annotation	PF12957	NA	NA
UHGV-0104401_21	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0104401_21	UniRef90	UniRef90_UPI001C8D41EE	siphovirus Gp157 family protein	NA
UHGV-0104401_21	eggNOG-mapper	1256908.HMPREF0373_00657	Siphovirus Gp157	NA
UHGV-0104401_21	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0104401_21	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0104401_24	Structural annotation	PF16311, NF002796	NA	NA
UHGV-0104401_28	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0104401_28	UniRef90	UniRef90_A0A3B8SDS0	NA	NA
UHGV-0104401_28	eggNOG-mapper	1235802.C823_04729	NA	NA
UHGV-0104401_28	Pfam	PF13643	NA	DUF4145
UHGV-0104401_29	PHROG	phrog_14088	NA	unknown function
UHGV-0104401_29	UniRef90	UniRef90_A0A412MEV1	Carboxypeptidase	NA
UHGV-0104401_29	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-0104401_30	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0104401_30	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0104401_30	UniRef90	UniRef90_UPI0015713293	phage antirepressor KilAC domain-containing protein	NA
UHGV-0104401_30	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-0104401_30	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0104401_30	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0104401_30	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0104401_30	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0104401_31	UniRef90	UniRef90_A0A2N5PI32	NA	NA
UHGV-0104401_31	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-0104401_31	Pfam	PF05339	NA	DUF739
UHGV-0104401_31	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0104401_31	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0104401_32	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0104401_32	UniRef90	UniRef90_UPI001899F3FA	transcriptional regulator	NA
UHGV-0104401_32	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-0104401_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104401_32	Structural annotation	PF01381, NF041951	NA	NA
UHGV-0104401_34	UniRef90	UniRef90_A0A1S1V5C0	Peptidase_M78 domain-containing protein	NA
UHGV-0104401_34	eggNOG-mapper	1256908.HMPREF0373_00642	Zn peptidase	NA
UHGV-0104401_34	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0104401_35	PHROG	phrog_2700	NA	unknown function
UHGV-0104401_35	UniRef90	UniRef90_A0A6L6XDM1	SHOCT domain-containing protein	NA
UHGV-0104401_35	eggNOG-mapper	565664.EFXG_01134	Short C-terminal domain	NA
UHGV-0104401_35	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0104401_35	Structural annotation	PF14470, NF033891, COG3402	NA	NA
UHGV-0104401_36	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0104401_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104401_36	UniRef90	UniRef90_UPI001C0F3641	helix-turn-helix domain-containing protein	NA
UHGV-0104401_36	eggNOG-mapper	398512.JQKC01000030_gene4404	Helix-turn-helix XRE-family like proteins	NA
UHGV-0104401_36	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0104401_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104401_36	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0104401_36	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-0104401_36	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0104401_36	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0104401_37	UniRef90	UniRef90_A0A7M2AKX8	Helix-turn-helix domain-containing protein	NA
UHGV-0104401_37	eggNOG-mapper	1121121.KB894317_gene4211	Helix-turn-helix domain	NA
UHGV-0104401_37	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0104401_38	PHROG	phrog_4707	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0104401_38	UniRef90	UniRef90_UPI001C0ED1E4	NA	NA
UHGV-0104401_38	eggNOG-mapper	1211817.CCAT010000053_gene2107	NA	NA
UHGV-0104401_38	Pfam	PF19481	NA	DUF6017
UHGV-0104401_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0104401_38	Structural annotation	PF19481, TIGR04176, COG3355	NA	NA
UHGV-0104401_42	KOfam	K14059	int; integrase	NA
UHGV-0104401_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0104401_42	UniRef90	UniRef90_A0A413PMX2	Site-specific integrase	NA
UHGV-0104401_42	eggNOG-mapper	632335.Calkr_0670	Belongs to the 'phage' integrase family	NA
UHGV-0104401_42	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0104401_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104401_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0104401_42	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA