UHGV-0104409

Genome information

Genome length 47,670 bps

CDS count 77

Completeness 99.90% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104409
vOTU ID	vOTU-067469
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_255252
BioSample	SAMEA3708805
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.94
Jumbo phage	No

Genome content
Genome length	47,670 bps
GC content	53.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	91.08%
Average CDS length	568.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104409_1	UniRef90	UniRef90_A0A2X3J878	Carbamate kinase 1	NA
UHGV-0104409_1	eggNOG-mapper	742738.HMPREF9460_00734	Amino acid kinase family	NA
UHGV-0104409_1	COG	COG0549	Carbamate kinase	NA
UHGV-0104409_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0104409_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104409_2	UniRef90	UniRef90_A0A096DH56	HTH cro/C1-type domain-containing protein	NA
UHGV-0104409_2	eggNOG-mapper	742738.HMPREF9460_00733	Helix-turn-helix XRE-family like proteins	NA
UHGV-0104409_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104409_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104409_3	KOfam	K11717	sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]	NA
UHGV-0104409_3	PHROG	phrog_12787	NA	unknown function
UHGV-0104409_3	UniRef90	UniRef90_A0A6N3GHA4	Putative cysteine desulfurase	NA
UHGV-0104409_3	eggNOG-mapper	742738.HMPREF9460_00714	DegT/DnrJ/EryC1/StrS aminotransferase family	NA
UHGV-0104409_3	PADLOC	SspA_00001	SspA	SSP
UHGV-0104409_3	Pfam	PF00266	Aminotransferase class-V	Aminotran_5
UHGV-0104409_3	NCBIFam	TIGR01977.1	cysteine desulfurase family protein	NA
UHGV-0104409_3	COG	COG0520	Selenocysteine lyase/Cysteine desulfurase	NA
UHGV-0104409_3	Structural annotation	PF00266, MF_00331, TIGR03403, COG1104	NA	NA
UHGV-0104409_4	UniRef90	UniRef90_UPI001647B0A0	polysaccharide deacetylase family protein	NA
UHGV-0104409_4	eggNOG-mapper	742738.HMPREF9460_00713	polysaccharide deacetylase	NA
UHGV-0104409_4	COG	COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	NA
UHGV-0104409_5	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0104409_6	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0104409_7	PHROG	phrog_16490	NA	unknown function
UHGV-0104409_7	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0104409_9	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0104409_11	PHROG	phrog_4105	NA	unknown function
UHGV-0104409_11	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0104409_12	PHROG	phrog_1129	holin	lysis
UHGV-0104409_12	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-0104409_12	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0104409_12	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0104409_12	Structural annotation	PF06946	NA	NA
UHGV-0104409_13	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0104409_13	PHROG	phrog_18955	NA	unknown function
UHGV-0104409_13	UniRef90	UniRef90_A0A1C7FQI4	MurNAc-LAA domain-containing protein	NA
UHGV-0104409_13	eggNOG-mapper	1226322.HMPREF1545_00782	NA	NA
UHGV-0104409_13	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0104409_13	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0104409_13	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0104409_13	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0104409_14	PHROG	phrog_2310	NA	unknown function
UHGV-0104409_15	PHROG	phrog_22773	NA	unknown function
UHGV-0104409_15	UniRef90	UniRef90_UPI001958116B	toxin-antitoxin system toxin subunit	NA
UHGV-0104409_15	eggNOG-mapper	742738.HMPREF9460_03965	NA	NA
UHGV-0104409_17	PHROG	phrog_27545	NA	unknown function
UHGV-0104409_17	eggNOG-mapper	742738.HMPREF9460_00363	NA	NA
UHGV-0104409_19	PHROG	phrog_13589	NA	unknown function
UHGV-0104409_19	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0104409_19	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0104409_20	UniRef90	UniRef90_UPI001C1090AB	collagen-like protein	NA
UHGV-0104409_20	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-0104409_20	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0104409_20	Structural annotation	PF10651, COG5456	NA	NA
UHGV-0104409_22	PHROG	phrog_32744	NA	unknown function
UHGV-0104409_22	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0104409_22	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0104409_23	PHROG	phrog_1194	NA	unknown function
UHGV-0104409_23	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0104409_23	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0104409_24	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0104409_24	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0104409_24	COG	COG1511	NA	NA
UHGV-0104409_24	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0104409_25	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0104409_25	UniRef90	UniRef90_UPI001D05CE4F	OB-fold putative lipoprotein	NA
UHGV-0104409_25	eggNOG-mapper	1203606.HMPREF1526_01637	tRNA_anti-like	NA
UHGV-0104409_25	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0104409_26	PHROG	phrog_706	NA	unknown function
UHGV-0104409_26	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-0104409_26	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0104409_26	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0104409_26	Structural annotation	PF06854	NA	NA
UHGV-0104409_27	PHROG	phrog_11299	NA	unknown function
UHGV-0104409_27	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0104409_27	Structural annotation	PF10666	NA	NA
UHGV-0104409_28	PHROG	phrog_3099	NA	unknown function
UHGV-0104409_28	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0104409_28	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0104409_29	PHROG	phrog_3266	tail completion	connector
UHGV-0104409_29	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0104409_29	Structural annotation	PF12691	NA	NA
UHGV-0104409_30	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0104409_30	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0104409_30	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0104409_30	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0104409_30	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0104409_31	PHROG	phrog_3366	NA	unknown function
UHGV-0104409_31	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0104409_31	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0104409_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0104409_32	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0104409_33	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-0104409_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0104409_34	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-0104409_34	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0104409_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0104409_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0104409_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0104409_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0104409_35	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0104409_35	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0104409_37	Structural annotation	PF11607, MF_00436, NF011232, COG1923	NA	NA
UHGV-0104409_38	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0104409_38	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0104409_38	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0104409_38	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0104409_38	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0104409_38	COG	COG2369	NA	NA
UHGV-0104409_38	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0104409_39	PHROG	phrog_533	portal protein	head and packaging
UHGV-0104409_39	UniRef90	UniRef90_U2R2D2	Putative phage minor capsid protein	NA
UHGV-0104409_39	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0104409_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0104409_39	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0104409_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104409_40	PHROG	phrog_10250	NA	unknown function
UHGV-0104409_40	UniRef90	UniRef90_UPI0018AC3323	PBSX family phage terminase large subunit	NA
UHGV-0104409_40	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0104409_40	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0104409_40	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0104409_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0104409_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104409_40	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0104409_41	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-0104409_41	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0104409_41	Structural annotation	PF13542	NA	NA
UHGV-0104409_42	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0104409_42	UniRef90	UniRef90_A0A1V0QCE9	Bro-N domain-containing protein	NA
UHGV-0104409_42	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0104409_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0104409_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0104409_42	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0104409_44	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0104409_44	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0104409_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104409_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104409_44	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0104409_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104409_45	UniRef90	UniRef90_UPI0019230A1A	helix-turn-helix domain-containing protein	NA
UHGV-0104409_45	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0104409_45	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0104409_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104409_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0104409_49	PHROG	phrog_22543	NA	unknown function
UHGV-0104409_49	Pfam	PF13453	Transcription factor zinc-finger	zf-TFIIB
UHGV-0104409_50	PHROG	phrog_38832	NA	unknown function
UHGV-0104409_50	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0104409_53	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0104409_53	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0104409_54	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0104409_54	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0104409_54	UniRef90	UniRef90_A0A6I2QZV1	Cytosine-specific methyltransferase	NA
UHGV-0104409_54	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-0104409_54	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0104409_54	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0104409_54	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0104409_54	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0104409_54	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0104409_55	Structural annotation	PF12759	NA	NA
UHGV-0104409_56	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0104409_56	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0104409_56	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0104409_56	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0104409_56	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0104409_57	PHROG	phrog_9804	NA	unknown function
UHGV-0104409_57	UniRef90	UniRef90_UPI0018976F94	replicative helicase loader/inhibitor	NA
UHGV-0104409_57	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0104409_57	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0104409_57	Structural annotation	PF11417	NA	NA
UHGV-0104409_58	PHROG	phrog_15768	NA	unknown function
UHGV-0104409_58	UniRef90	UniRef90_A0A3D3Y5P0	NA	NA
UHGV-0104409_58	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0104409_58	Pfam	PF19808	NA	DUF6291
UHGV-0104409_58	Structural annotation	PF19808	NA	NA
UHGV-0104409_59	PHROG	phrog_18107	NA	unknown function
UHGV-0104409_59	UniRef90	UniRef90_R6I207	PF05037 family protein	NA
UHGV-0104409_59	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0104409_59	Structural annotation	PF05037	NA	NA
UHGV-0104409_60	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0104409_60	UniRef90	UniRef90_UPI0013D1CBB8	AAA family ATPase	NA
UHGV-0104409_60	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0104409_60	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0104409_62	Structural annotation	PF09943	NA	NA
UHGV-0104409_63	KOfam	K15352	pipB2; secreted effector protein PipB2	NA
UHGV-0104409_63	PHROG	phrog_9562	NA	unknown function
UHGV-0104409_63	UniRef90	UniRef90_A0A6N3FDD3	Pentapeptide repeats (8 copies)	NA
UHGV-0104409_63	eggNOG-mapper	1232443.BAIA02000078_gene49	Pentapeptide repeat protein	NA
UHGV-0104409_63	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0104409_63	Pfam	PF19062	NA	DUF5758
UHGV-0104409_63	COG	COG1357	NA	NA
UHGV-0104409_63	Structural annotation	PF19062, PF13599, NF000139	NA	NA
UHGV-0104409_66	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-0104409_66	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0104409_71	UniRef90	UniRef90_U2BKK8	HTH cro/C1-type domain-containing protein	NA
UHGV-0104409_71	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104409_71	Structural annotation	PF13560, NF040507, COG1396	NA	NA
UHGV-0104409_72	UniRef90	UniRef90_UPI0018976583	helix-turn-helix domain-containing protein	NA
UHGV-0104409_72	eggNOG-mapper	1131462.DCF50_p1828	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0104409_72	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0104409_72	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0104409_73	PHROG	phrog_1914	NA	unknown function
UHGV-0104409_73	UniRef90	UniRef90_A0A1Y4FGT9	Peptidase_M78 domain-containing protein	NA
UHGV-0104409_73	eggNOG-mapper	1286171.EAL2_c05140	IrrE N-terminal-like domain	NA
UHGV-0104409_73	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0104409_73	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0104409_74	PHROG	phrog_33872	NA	unknown function
UHGV-0104409_75	KOfam	K14059	int; integrase	NA
UHGV-0104409_75	PHROG	phrog_1	integrase	integration and excision
UHGV-0104409_75	UniRef90	UniRef90_UPI001959BD31	site-specific integrase	NA
UHGV-0104409_75	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-0104409_75	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104409_75	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0104409_75	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0104409_76	UniRef90	UniRef90_G9YPR2	UBA/TS-N domain protein	NA
UHGV-0104409_76	eggNOG-mapper	742738.HMPREF9460_00712	UBA TS-N domain	NA
UHGV-0104409_76	COG	COG1308	Transcription factor homologous to NACalpha-BTF3	NA
UHGV-0104409_77	KOfam	K18941	arlR; two-component system, OmpR family, response regulator ArlR	NA
UHGV-0104409_77	UniRef90	UniRef90_A0A847WA09	Stage 0 sporulation protein A homolog (Fragment)	NA
UHGV-0104409_77	eggNOG-mapper	742738.HMPREF9460_00711	Transcriptional regulatory protein, C terminal	NA
UHGV-0104409_77	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA