UHGV-0104489

Genome information

Genome length 30,030 bps

CDS count 50

Completeness 75.70% (medium-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104489
vOTU ID	vOTU-017566
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_239735
BioSample	SAMEA3708473
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.83
Jumbo phage	No

Genome content
Genome length	30,030 bps
GC content	45.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	88.18%
Average CDS length	531.96 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104489_2	UniRef90	UniRef90_A0A3R6V2R9	Tail fiber domain-containing protein	NA
UHGV-0104489_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0104489_2	Structural annotation	NF041249	NA	NA
UHGV-0104489_3	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0104489_3	eggNOG-mapper	1321782.HMPREF1986_00351	NA	NA
UHGV-0104489_3	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0104489_4	PHROG	phrog_12105	NA	unknown function
UHGV-0104489_7	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0104489_7	PHROG	phrog_2649	endolysin	lysis
UHGV-0104489_7	UniRef90	UniRef90_A0A416FC87	Peptidase_M15_4 domain-containing protein	NA
UHGV-0104489_7	eggNOG-mapper	411902.CLOBOL_06235	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0104489_7	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0104489_7	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0104489_7	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0104489_7	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-0104489_8	PHROG	phrog_918	NA	unknown function
UHGV-0104489_8	UniRef90	UniRef90_UPI00115A7D93	NA	NA
UHGV-0104489_8	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-0104489_8	Pfam	PF19791	NA	DUF6275
UHGV-0104489_8	Structural annotation	PF19791	NA	NA
UHGV-0104489_9	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0104489_9	UniRef90	UniRef90_A0A417BWH3	NA	NA
UHGV-0104489_9	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0104489_9	Pfam	PF14359	NA	DUF4406
UHGV-0104489_9	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0104489_10	PHROG	phrog_1129	holin	lysis
UHGV-0104489_10	UniRef90	UniRef90_A0A3R6U6I1	Enolase	NA
UHGV-0104489_10	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0104489_10	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0104489_10	Structural annotation	PF06946	NA	NA
UHGV-0104489_11	PHROG	phrog_4105	NA	unknown function
UHGV-0104489_11	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0104489_13	UniRef90	UniRef90_A0A3R6QNF9	ASCH domain-containing protein	NA
UHGV-0104489_13	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0104489_14	PHROG	phrog_12931	NA	unknown function
UHGV-0104489_14	eggNOG-mapper	1298920.KI911353_gene2672	NA	NA
UHGV-0104489_15	PHROG	phrog_25888	NA	unknown function
UHGV-0104489_15	UniRef90	UniRef90_A0A3R6NAE3	H_lectin domain-containing protein	NA
UHGV-0104489_15	eggNOG-mapper	610130.Closa_0759	NA	NA
UHGV-0104489_15	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0104489_16	PHROG	phrog_15239	NA	unknown function
UHGV-0104489_17	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0104489_17	UniRef90	UniRef90_A0A3R6TVJ6	N4-gp56 family major capsid protein	NA
UHGV-0104489_17	eggNOG-mapper	1203606.HMPREF1526_02746	NA	NA
UHGV-0104489_17	Pfam	PF13252	NA	DUF4043
UHGV-0104489_17	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0104489_17	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0104489_18	PHROG	phrog_13908	NA	unknown function
UHGV-0104489_18	UniRef90	UniRef90_A0A174CZ20	Predicted ribosomal protein	NA
UHGV-0104489_18	eggNOG-mapper	748224.HMPREF9436_01398	Cysteine protease Prp	NA
UHGV-0104489_18	COG	COG2868	NA	NA
UHGV-0104489_19	KOfam	K07584	NA	NA
UHGV-0104489_19	PHROG	phrog_4478	peptidase	other
UHGV-0104489_19	UniRef90	UniRef90_A0A417BWI8	Ribosomal-processing cysteine protease Prp	NA
UHGV-0104489_19	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0104489_19	COG	COG2868	NA	NA
UHGV-0104489_19	Structural annotation	NF011130, COG2868	NA	NA
UHGV-0104489_20	PHROG	phrog_156	portal protein	head and packaging
UHGV-0104489_20	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0104489_20	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0104489_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104489_21	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0104489_21	UniRef90	UniRef90_A0A3R6NVR9	Terminase-like family protein	NA
UHGV-0104489_21	eggNOG-mapper	748224.HMPREF9436_02548	Terminase-like family	NA
UHGV-0104489_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0104489_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104489_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0104489_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0104489_22	UniRef90	UniRef90_UPI001A9AF3C1	helix-turn-helix domain-containing protein	NA
UHGV-0104489_22	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-0104489_22	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0104489_22	Structural annotation	PF07141	NA	NA
UHGV-0104489_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0104489_24	eggNOG-mapper	1321782.HMPREF1986_00335	NA	NA
UHGV-0104489_24	Structural annotation	PF21578	NA	NA
UHGV-0104489_25	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0104489_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0104489_25	UniRef90	UniRef90_A0A2S6HJ77	Site-specific recombinase XerD	NA
UHGV-0104489_25	eggNOG-mapper	1298920.KI911353_gene2699	Belongs to the 'phage' integrase family	NA
UHGV-0104489_25	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0104489_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104489_25	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0104489_25	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0104489_26	UniRef90	UniRef90_A0A3R6V2Q9	CopG family transcriptional regulator	NA
UHGV-0104489_26	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0104489_26	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0104489_29	PHROG	phrog_2316	NA	unknown function
UHGV-0104489_29	UniRef90	UniRef90_UPI001CC48B51	NA	NA
UHGV-0104489_29	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0104489_29	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0104489_31	PHROG	phrog_15198	NA	unknown function
UHGV-0104489_31	UniRef90	UniRef90_D7GWI5	NA	NA
UHGV-0104489_31	eggNOG-mapper	1232453.BAIF02000057_gene1153	NA	NA
UHGV-0104489_31	Pfam	PF04448	NA	DUF551
UHGV-0104489_32	UniRef90	UniRef90_A0A3R6K7W7	Sigma70_r4_2 domain-containing protein	NA
UHGV-0104489_32	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0104489_32	Structural annotation	PF13384, PF17516, NF001074, COG2771	NA	NA
UHGV-0104489_35	PHROG	phrog_7566	NA	unknown function
UHGV-0104489_35	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0104489_36	PHROG	phrog_17690	NA	unknown function
UHGV-0104489_36	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-0104489_37	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0104489_37	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0104489_37	UniRef90	UniRef90_A0A417BW93	RNase H type-1 domain-containing protein	NA
UHGV-0104489_37	eggNOG-mapper	742740.HMPREF9474_04320	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0104489_37	Pfam	PF00075	RNase H	RNase_H
UHGV-0104489_37	COG	COG0328	Ribonuclease HI	NA
UHGV-0104489_37	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0104489_40	UniRef90	UniRef90_A0A3R6SFF1	DNA-binding protein	NA
UHGV-0104489_40	eggNOG-mapper	646529.Desaci_3040	TIGRFAM DNA binding domain, excisionase family	NA
UHGV-0104489_40	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0104489_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0104489_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104489_45	UniRef90	UniRef90_A0A417BWP6	XRE family transcriptional regulator	NA
UHGV-0104489_45	eggNOG-mapper	1235802.C823_01933	Helix-turn-helix domain	NA
UHGV-0104489_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104489_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104489_47	KOfam	K07497	K07497; putative transposase	NA
UHGV-0104489_47	PHROG	phrog_157	transposase	integration and excision
UHGV-0104489_47	UniRef90	UniRef90_UPI001C8B1781	IS3 family transposase	NA
UHGV-0104489_47	eggNOG-mapper	1163671.JAGI01000002_gene3185	PFAM Integrase catalytic region	NA
UHGV-0104489_47	Pfam	PF13276	HTH-like domain	HTH_21
UHGV-0104489_47	Pfam	PF00665	Integrase core domain	rve
UHGV-0104489_47	Pfam	PF13333	Integrase core domain	rve_2
UHGV-0104489_47	NCBIFam	NF033516.0	IS3 family transposase	NA
UHGV-0104489_47	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0104489_47	Structural annotation	PF00665, PF13276, NF033516, COG2801	NA	NA
UHGV-0104489_48	KOfam	K07483	K07483; transposase	NA
UHGV-0104489_48	PHROG	phrog_151	transposase	integration and excision
UHGV-0104489_48	UniRef90	UniRef90_A0A1M5CR09	Transposase and inactivated derivatives	NA
UHGV-0104489_48	eggNOG-mapper	1235793.C809_03924	Helix-turn-helix domain	NA
UHGV-0104489_48	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0104489_48	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0104489_48	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0104489_48	Structural annotation	PF13518, PF13384, NF038385, COG2963	NA	NA
UHGV-0104489_49	KOfam	K14059	int; integrase	NA
UHGV-0104489_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0104489_49	UniRef90	UniRef90_A0A3R6SUQ8	Site-specific integrase	NA
UHGV-0104489_49	eggNOG-mapper	397288.C806_02995	Phage integrase family	NA
UHGV-0104489_49	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0104489_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104489_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0104489_49	Structural annotation	PF00589, PF14659, MF_01808, NF002331, COG4974	NA	NA