UHGV-0104522

Genome information

vOTU vOTU-082029

Genome length 39,656 bps

CDS count 60

Completeness 93.15% (high-quality)

geNomad score 0.9328

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104522
vOTU ID	vOTU-082029
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_238023
BioSample	SAMEA3708560
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.15% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9328
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.5
Jumbo phage	No

Genome content
Genome length	39,656 bps
GC content	28.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	89.34%
Average CDS length	592.80 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104522_1	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0104522_1	PHROG	phrog_1996	DNA methyltransferase	other
UHGV-0104522_1	UniRef90	UniRef90_UPI001D114162	DNA adenine methylase	NA
UHGV-0104522_1	eggNOG-mapper	272563.CD630_09350	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0104522_1	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0104522_1	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0104522_1	COG	COG0338	DNA-adenine methylase	NA
UHGV-0104522_2	PHROG	phrog_2776	NA	unknown function
UHGV-0104522_2	UniRef90	UniRef90_A0A7T7ZBE3	Endonuclease	NA
UHGV-0104522_2	eggNOG-mapper	349161.Dred_0923	NA	NA
UHGV-0104522_2	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0104522_3	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0104522_3	UniRef90	UniRef90_UPI00142FA48D	NA	NA
UHGV-0104522_3	eggNOG-mapper	1280689.AUJC01000003_gene948	NA	NA
UHGV-0104522_3	Pfam	PF12961	NA	DUF3850
UHGV-0104522_3	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0104522_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0104522_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0104522_8	UniRef90	UniRef90_UPI0019569AF1	single-stranded DNA-binding protein	NA
UHGV-0104522_8	eggNOG-mapper	1122217.KB899575_gene2011	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0104522_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0104522_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0104522_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0104522_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0104522_8	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0104522_9	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0104522_9	eggNOG-mapper	471875.RUMLAC_02229	NA	NA
UHGV-0104522_9	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0104522_10	dbAPIS	APIS070	NA	NA
UHGV-0104522_11	PHROG	phrog_918	NA	unknown function
UHGV-0104522_11	UniRef90	UniRef90_UPI001D017B4D	NA	NA
UHGV-0104522_11	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0104522_11	Pfam	PF19791	NA	DUF6275
UHGV-0104522_11	Structural annotation	PF19791	NA	NA
UHGV-0104522_12	PHROG	phrog_774	NA	unknown function
UHGV-0104522_12	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0104522_14	PHROG	phrog_4151	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0104522_14	UniRef90	UniRef90_UPI001BE62E37	transposase	NA
UHGV-0104522_14	eggNOG-mapper	537013.CLOSTMETH_01726	NA	NA
UHGV-0104522_14	COG	COG5484	NA	NA
UHGV-0104522_15	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0104522_15	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0104522_15	UniRef90	UniRef90_UPI001430C3DA	terminase small subunit	NA
UHGV-0104522_15	eggNOG-mapper	642492.Clole_2766	Terminase Small Subunit	NA
UHGV-0104522_15	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0104522_15	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0104522_15	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0104522_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104522_16	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0104522_16	UniRef90	UniRef90_UPI00195A06A7	PBSX family phage terminase large subunit	NA
UHGV-0104522_16	eggNOG-mapper	1123250.KB908417_gene648	Phage terminase large subunit	NA
UHGV-0104522_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0104522_16	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0104522_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0104522_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104522_16	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0104522_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-0104522_17	UniRef90	UniRef90_UPI00195B8F7D	phage portal protein	NA
UHGV-0104522_17	eggNOG-mapper	1123250.KB908417_gene647	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0104522_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0104522_17	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0104522_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0104522_18	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0104522_18	UniRef90	UniRef90_UPI001956544F	minor capsid protein	NA
UHGV-0104522_18	eggNOG-mapper	1123250.KB908417_gene646	Phage Mu protein F like protein	NA
UHGV-0104522_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0104522_18	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0104522_18	COG	COG2369	NA	NA
UHGV-0104522_18	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0104522_21	KOfam	K07584	NA	NA
UHGV-0104522_21	PHROG	phrog_4478	peptidase	other
UHGV-0104522_21	UniRef90	UniRef90_UPI001432261F	ribosomal-processing cysteine protease Prp	NA
UHGV-0104522_21	eggNOG-mapper	1280706.AUJE01000017_gene165	Cysteine protease Prp	NA
UHGV-0104522_21	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0104522_21	COG	COG2868	NA	NA
UHGV-0104522_21	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0104522_22	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0104522_22	UniRef90	UniRef90_UPI0014322C57	NA	NA
UHGV-0104522_22	eggNOG-mapper	1123250.KB908414_gene2104	NA	NA
UHGV-0104522_22	Pfam	PF14265	NA	DUF4355
UHGV-0104522_22	Structural annotation	PF14265	NA	NA
UHGV-0104522_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0104522_23	UniRef90	UniRef90_UPI00142F588B	phage major capsid protein	NA
UHGV-0104522_23	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0104522_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0104522_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0104522_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0104522_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0104522_24	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0104522_24	eggNOG-mapper	1123250.KB908414_gene2106	NA	NA
UHGV-0104522_25	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0104522_25	UniRef90	UniRef90_A0A7G3DS19	ABC transporter ATP-binding protein	NA
UHGV-0104522_25	eggNOG-mapper	318464.IO99_00600	NA	NA
UHGV-0104522_25	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0104522_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0104522_26	UniRef90	UniRef90_UPI0014302D01	HK97 gp10 family phage protein	NA
UHGV-0104522_26	eggNOG-mapper	883156.HMPREF9282_00955	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0104522_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0104522_27	PHROG	phrog_525	NA	unknown function
UHGV-0104522_27	eggNOG-mapper	1273103.NM10_01044	NA	NA
UHGV-0104522_27	Pfam	PF20765	NA	DUF6838
UHGV-0104522_27	Structural annotation	PF20765	NA	NA
UHGV-0104522_28	PHROG	phrog_32779	NA	unknown function
UHGV-0104522_28	UniRef90	UniRef90_A0A1C5THE5	Collagen triple helix repeat (20 copies)	NA
UHGV-0104522_28	eggNOG-mapper	1235803.C825_05332	Collagen triple helix repeat (20 copies)	NA
UHGV-0104522_28	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0104522_30	PHROG	phrog_1480	tail sheath	tail
UHGV-0104522_30	UniRef90	UniRef90_UPI001430F2FD	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0104522_30	eggNOG-mapper	1123250.KB908414_gene2110	Phage tail sheath C-terminal domain	NA
UHGV-0104522_30	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0104522_30	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0104522_30	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0104522_31	PHROG	phrog_365	tail protein	tail
UHGV-0104522_31	UniRef90	UniRef90_UPI0014307D12	phage tail tube protein	NA
UHGV-0104522_31	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-0104522_31	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0104522_31	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0104522_32	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0104522_32	UniRef90	UniRef90_A0A1H3R255	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0104522_32	eggNOG-mapper	568816.Acin_1376	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0104522_32	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0104522_32	Structural annotation	PF08890	NA	NA
UHGV-0104522_34	PHROG	phrog_16692	NA	unknown function
UHGV-0104522_34	UniRef90	UniRef90_UPI00195CA53B	phage tail tape measure protein	NA
UHGV-0104522_34	eggNOG-mapper	1273103.NM10_01024	Phage-related minor tail protein	NA
UHGV-0104522_34	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0104522_34	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0104522_34	COG	COG5283	Phage-related tail protein	NA
UHGV-0104522_34	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0104522_35	PHROG	phrog_380	endolysin	lysis
UHGV-0104522_35	UniRef90	UniRef90_A0A6N3I7S1	LysM domain/BON superfamily protein	NA
UHGV-0104522_35	eggNOG-mapper	1123250.KB908414_gene2114	LysM domain	NA
UHGV-0104522_35	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0104522_35	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-0104522_36	PHROG	phrog_400	tail protein	tail
UHGV-0104522_36	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0104522_36	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-0104522_36	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0104522_36	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0104522_37	PHROG	phrog_579	NA	unknown function
UHGV-0104522_37	UniRef90	UniRef90_UPI001DAA9C69	NA	NA
UHGV-0104522_37	eggNOG-mapper	883156.HMPREF9282_00963	NA	NA
UHGV-0104522_37	Pfam	PF10844	NA	DUF2577
UHGV-0104522_37	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0104522_38	PHROG	phrog_120	baseplate protein	tail
UHGV-0104522_38	UniRef90	UniRef90_UPI0014314BBF	NA	NA
UHGV-0104522_38	eggNOG-mapper	1123250.KB908414_gene2117	NA	NA
UHGV-0104522_38	Pfam	PF10934	NA	DUF2634
UHGV-0104522_38	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0104522_39	PHROG	phrog_6	baseplate protein	tail
UHGV-0104522_39	UniRef90	UniRef90_H3K5D0	Baseplate_J domain-containing protein	NA
UHGV-0104522_39	eggNOG-mapper	883156.HMPREF9282_00965	Baseplate J-like protein	NA
UHGV-0104522_39	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0104522_39	COG	COG3299	NA	NA
UHGV-0104522_39	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0104522_40	PHROG	phrog_521	tail protein	tail
UHGV-0104522_40	UniRef90	UniRef90_UPI0018739AB4	NA	NA
UHGV-0104522_40	eggNOG-mapper	568816.Acin_1302	NA	NA
UHGV-0104522_40	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0104522_40	COG	COG3778	NA	NA
UHGV-0104522_40	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0104522_41	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0104522_41	UniRef90	UniRef90_UPI0018C6F949	phage tail protein	NA
UHGV-0104522_41	eggNOG-mapper	1232428.CAVO010000003_gene994	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0104522_41	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0104522_41	Structural annotation	PF12571, NF012201	NA	NA
UHGV-0104522_43	KOfam	K14059	int; integrase	NA
UHGV-0104522_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0104522_43	UniRef90	UniRef90_A0A378NSV8	Tyrosine recombinase XerD	NA
UHGV-0104522_43	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0104522_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104522_43	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0104522_43	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0104522_46	Structural annotation	PF13084	NA	NA
UHGV-0104522_47	PHROG	phrog_199	holin	lysis
UHGV-0104522_47	UniRef90	UniRef90_UPI0014311A80	phage holin family protein	NA
UHGV-0104522_47	eggNOG-mapper	927704.SELR_16600	Bacteriophage holin family	NA
UHGV-0104522_47	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0104522_47	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0104522_47	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0104522_47	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0104522_48	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0104522_48	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0104522_48	UniRef90	UniRef90_UPI0014304E05	site-specific DNA-methyltransferase	NA
UHGV-0104522_48	eggNOG-mapper	1123511.KB905857_gene1684	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0104522_48	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-0104522_48	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0104522_48	COG	COG0863	DNA modification methylase	NA
UHGV-0104522_48	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0104522_50	PHROG	phrog_6215	glutathionylspermidine synthase	moron, auxiliary metabolic gene and host takeover
UHGV-0104522_50	UniRef90	UniRef90_UPI00142F43E1	glutathionylspermidine synthase family protein	NA
UHGV-0104522_50	eggNOG-mapper	626939.HMPREF9443_00807	Glutathionylspermidine synthase	NA
UHGV-0104522_50	Pfam	PF03738	Glutathionylspermidine synthase preATP-grasp	GSP_synth
UHGV-0104522_50	COG	COG0754	Glutathionylspermidine synthase, CHAP domain	NA
UHGV-0104522_52	KOfam	K07273	acm; lysozyme	NA
UHGV-0104522_52	PHROG	phrog_291	endolysin	lysis
UHGV-0104522_52	UniRef90	UniRef90_UPI00142FE002	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0104522_52	eggNOG-mapper	1122216.AUHW01000006_gene367	Glycosyl hydrolase family 25	NA
UHGV-0104522_52	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0104522_52	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0104522_52	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0104522_57	PHROG	phrog_18195	NA	unknown function
UHGV-0104522_57	UniRef90	UniRef90_UPI0012D2F831	SEC-C domain-containing protein	NA
UHGV-0104522_57	eggNOG-mapper	111781.Lepto7376_0805	SEC-C Motif Domain Protein	NA
UHGV-0104522_57	COG	COG3012	NA	NA
UHGV-0104522_58	KOfam	K07039	NA	NA
UHGV-0104522_58	UniRef90	UniRef90_UPI001C404740	SEC-C domain-containing protein	NA
UHGV-0104522_58	Pfam	PF02810	SEC-C motif	SEC-C
UHGV-0104522_58	COG	COG0653	Preprotein translocase subunit SecA (ATPase, RNA helicase)	NA
UHGV-0104522_59	KOfam	K11991	tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]	NA
UHGV-0104522_59	UniRef90	UniRef90_H3K5H2	CMP/dCMP-type deaminase domain-containing protein	NA
UHGV-0104522_59	eggNOG-mapper	1122217.KB899584_gene78	MafB19-like deaminase	NA
UHGV-0104522_59	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0104522_59	COG	COG0590	tRNA(Arg) A34 adenosine deaminase TadA	NA
UHGV-0104522_60	KOfam	K02824	uraA, pyrP; uracil permease	NA
UHGV-0104522_60	PHROG	phrog_20031	NA	unknown function
UHGV-0104522_60	UniRef90	UniRef90_A0A239TSJ7	Uracil transporter	NA
UHGV-0104522_60	eggNOG-mapper	1122217.KB899584_gene79	permease	NA
UHGV-0104522_60	Pfam	PF00860	Permease family	Xan_ur_permease
UHGV-0104522_60	NCBIFam	NF007995.0	uracil permease	NA
UHGV-0104522_60	COG	COG2233	Xanthine/uracil permease	NA
UHGV-0104522_60	Structural annotation	PF00860, NF007995, COG2233	NA	NA