UHGV-0104563

Genome information

Genome length 39,604 bps

CDS count 60

Completeness 94.96% (high-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104563
vOTU ID	vOTU-074773
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_248021
BioSample	SAMEA3708738
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.96% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.28
Jumbo phage	No

Genome content
Genome length	39,604 bps
GC content	39.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	92.15%
Average CDS length	612.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104563_1	KOfam	K01091	gph; phosphoglycolate phosphatase [EC:3.1.3.18]	NA
UHGV-0104563_1	UniRef90	UniRef90_A0A564UQ23	Phosphoglycolate phosphatase	NA
UHGV-0104563_1	eggNOG-mapper	471875.RUMLAC_01935	Haloacid dehalogenase-like hydrolase	NA
UHGV-0104563_1	Pfam	PF13419	Haloacid dehalogenase-like hydrolase	HAD_2
UHGV-0104563_1	NCBIFam	TIGR01549.1	HAD-IA family hydrolase	NA
UHGV-0104563_1	COG	COG0546	Phosphoglycolate phosphatase, HAD superfamily	NA
UHGV-0104563_3	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0104563_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104563_3	UniRef90	UniRef90_A0A174Y1D8	HTH-type transcriptional regulator Xre	NA
UHGV-0104563_3	eggNOG-mapper	97139.C824_05563	DNA-binding helix-turn-helix protein	NA
UHGV-0104563_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104563_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104563_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0104563_4	PHROG	phrog_3393	endolysin	lysis
UHGV-0104563_4	UniRef90	UniRef90_D4M5A7	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0104563_4	eggNOG-mapper	1232453.BAIF02000059_gene1616	Ami_2	NA
UHGV-0104563_4	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0104563_5	KOfam	K07273	acm; lysozyme	NA
UHGV-0104563_5	PHROG	phrog_291	endolysin	lysis
UHGV-0104563_5	UniRef90	UniRef90_UPI001A9A4D2C	glycoside hydrolase family 25 protein	NA
UHGV-0104563_5	eggNOG-mapper	537007.BLAHAN_04972	Glycosyl hydrolases family 25	NA
UHGV-0104563_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0104563_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0104563_5	Structural annotation	PF01183, TIGR04041, COG3757	NA	NA
UHGV-0104563_6	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-0104563_7	PHROG	phrog_37799	NA	unknown function
UHGV-0104563_7	UniRef90	UniRef90_A0A373N7C7	Protein utxA	NA
UHGV-0104563_7	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0104563_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0104563_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0104563_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0104563_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0104563_10	PHROG	phrog_11419	tail fiber protein	tail
UHGV-0104563_10	eggNOG-mapper	349123.Lreu23DRAFT_3172	NA	NA
UHGV-0104563_10	Structural annotation	PF16255, PF10651, NF041897, TIGR02695	NA	NA
UHGV-0104563_11	PHROG	phrog_14030	NA	unknown function
UHGV-0104563_11	UniRef90	UniRef90_UPI0018A8CA3B	phage tail tip lysozyme	NA
UHGV-0104563_11	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0104563_11	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0104563_11	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0104563_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0104563_11	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0104563_12	PHROG	phrog_13289	tail protein	tail
UHGV-0104563_12	UniRef90	UniRef90_UPI000E46B429	phage tail protein	NA
UHGV-0104563_12	eggNOG-mapper	1235798.C817_04594	Prophage endopeptidase tail	NA
UHGV-0104563_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0104563_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0104563_12	COG	COG4926	Phage-related protein	NA
UHGV-0104563_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0104563_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0104563_13	UniRef90	UniRef90_A0A414B833	Phage tail protein	NA
UHGV-0104563_13	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-0104563_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0104563_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0104563_14	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0104563_14	PHROG	phrog_5218	NA	unknown function
UHGV-0104563_14	UniRef90	UniRef90_UPI000E504F09	phage tail tape measure protein	NA
UHGV-0104563_14	eggNOG-mapper	411459.RUMOBE_00926	Phage-related minor tail protein	NA
UHGV-0104563_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0104563_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0104563_14	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-0104563_16	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-0104563_16	Structural annotation	PF11836	NA	NA
UHGV-0104563_17	PHROG	phrog_88	major tail protein	tail
UHGV-0104563_17	UniRef90	UniRef90_UPI000E51AB4C	major tail protein	NA
UHGV-0104563_17	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0104563_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0104563_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0104563_18	UniRef90	UniRef90_UPI000E471C89	phage tail protein	NA
UHGV-0104563_18	eggNOG-mapper	97139.C824_05966	NA	NA
UHGV-0104563_18	Structural annotation	PF05657	NA	NA
UHGV-0104563_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0104563_19	UniRef90	UniRef90_A5ZPL5	Phage protein, HK97 gp10 family	NA
UHGV-0104563_19	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0104563_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0104563_19	Structural annotation	TIGR01725	NA	NA
UHGV-0104563_20	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0104563_20	UniRef90	UniRef90_A5ZPL6	Putative phage head-tail adaptor	NA
UHGV-0104563_20	eggNOG-mapper	97139.C824_05968	NA	NA
UHGV-0104563_20	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0104563_21	PHROG	phrog_5223	neck protein	connector
UHGV-0104563_21	eggNOG-mapper	1235792.C808_03062	NA	NA
UHGV-0104563_21	Structural annotation	TIGR01560	NA	NA
UHGV-0104563_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0104563_22	UniRef90	UniRef90_UPI000E46F05C	phage major capsid protein	NA
UHGV-0104563_22	eggNOG-mapper	1235792.C808_03063	phage major capsid protein, HK97 family	NA
UHGV-0104563_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0104563_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0104563_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0104563_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0104563_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0104563_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0104563_23	UniRef90	UniRef90_UPI000E4C463A	Clp protease ClpP	NA
UHGV-0104563_23	eggNOG-mapper	411459.RUMOBE_00936	Belongs to the peptidase S14 family	NA
UHGV-0104563_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0104563_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0104563_23	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0104563_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0104563_24	UniRef90	UniRef90_UPI000E534E57	phage portal protein	NA
UHGV-0104563_24	eggNOG-mapper	411459.RUMOBE_00937	NA	NA
UHGV-0104563_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0104563_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0104563_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0104563_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0104563_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0104563_25	UniRef90	UniRef90_UPI000E4C9919	terminase large subunit	NA
UHGV-0104563_25	eggNOG-mapper	1235792.C808_03066	Phage Terminase	NA
UHGV-0104563_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0104563_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0104563_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0104563_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0104563_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0104563_26	UniRef90	UniRef90_UPI000E4F2EB1	phage terminase small subunit P27 family	NA
UHGV-0104563_26	eggNOG-mapper	1235792.C808_03067	Phage terminase, small subunit	NA
UHGV-0104563_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0104563_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0104563_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0104563_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0104563_27	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104563_27	UniRef90	UniRef90_UPI000E53828D	HNH endonuclease	NA
UHGV-0104563_27	eggNOG-mapper	1235792.C808_03068	HNH endonuclease	NA
UHGV-0104563_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0104563_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0104563_29	PHROG	phrog_32514	NA	unknown function
UHGV-0104563_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0104563_30	UniRef90	UniRef90_A0A416MN03	Sigma70_r4 domain-containing protein	NA
UHGV-0104563_30	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0104563_30	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0104563_32	Structural annotation	PF01917, NF006325	NA	NA
UHGV-0104563_33	PHROG	phrog_15968	anti-repressor	transcription regulation
UHGV-0104563_33	UniRef90	UniRef90_A0A3A9DQP6	ANT domain-containing protein (Fragment)	NA
UHGV-0104563_33	eggNOG-mapper	768726.HMPREF9178_1088	AntA/AntB antirepressor	NA
UHGV-0104563_33	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0104563_33	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0104563_33	Structural annotation	PF03374, COG3645	NA	NA
UHGV-0104563_37	PHROG	phrog_7566	NA	unknown function
UHGV-0104563_37	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0104563_38	eggNOG-mapper	1196322.A370_05726	NA	NA
UHGV-0104563_39	PHROG	phrog_15077	NA	unknown function
UHGV-0104563_39	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0104563_39	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0104563_39	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0104563_40	PHROG	phrog_8470	NA	unknown function
UHGV-0104563_40	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0104563_40	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0104563_40	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0104563_40	Structural annotation	PF14284	NA	NA
UHGV-0104563_41	PHROG	phrog_4433	NA	unknown function
UHGV-0104563_41	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-0104563_42	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0104563_43	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0104563_43	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0104563_43	UniRef90	UniRef90_A0A844KCI1	Ribonuclease HI	NA
UHGV-0104563_43	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0104563_43	Pfam	PF00075	RNase H	RNase_H
UHGV-0104563_43	COG	COG0328	Ribonuclease HI	NA
UHGV-0104563_43	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0104563_44	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0104563_44	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-0104563_44	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0104563_48	Structural annotation	PF20037, COG3212	NA	NA
UHGV-0104563_49	PHROG	phrog_20330	NA	unknown function
UHGV-0104563_49	eggNOG-mapper	565664.EFXG_02669	NA	NA
UHGV-0104563_53	PHROG	phrog_32192	NA	unknown function
UHGV-0104563_54	PHROG	phrog_9607	NA	unknown function
UHGV-0104563_54	eggNOG-mapper	1378168.N510_03161	NA	NA
UHGV-0104563_54	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0104563_56	PHROG	phrog_11939	NA	unknown function
UHGV-0104563_56	eggNOG-mapper	148814.JI66_07220	NA	NA
UHGV-0104563_56	Structural annotation	PF13031	NA	NA
UHGV-0104563_58	UniRef90	UniRef90_UPI00156ED408	helix-turn-helix domain-containing protein	NA
UHGV-0104563_58	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0104563_58	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0104563_58	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0104563_59	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0104563_59	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0104563_59	UniRef90	UniRef90_A0A3E3JYF3	XRE family transcriptional regulator	NA
UHGV-0104563_59	eggNOG-mapper	1235790.C805_00592	Helix-turn-helix XRE-family like proteins	NA
UHGV-0104563_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104563_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104563_59	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0104563_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0104563_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104563_60	UniRef90	UniRef90_UPI0006CF5EA8	helix-turn-helix domain-containing protein	NA
UHGV-0104563_60	eggNOG-mapper	1235790.C805_00592	Helix-turn-helix XRE-family like proteins	NA
UHGV-0104563_60	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0104563_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104563_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104563_60	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA