UHGV-0104578

Genome information

Genome length 12,762 bps

CDS count 13

Completeness 93.44% (high-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104578
vOTU ID	vOTU-072319
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_252121
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.58
Jumbo phage	No

Genome content
Genome length	12,762 bps
GC content	46.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	13
CDS density	95.12%
Average CDS length	935.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104578_3	UniRef90	UniRef90_A0A843HBI5	Ig-like domain-containing protein	NA
UHGV-0104578_3	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0104578_4	Structural annotation	PF20934	NA	NA
UHGV-0104578_5	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0104578_5	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0104578_5	UniRef90	UniRef90_A0A4Q0U6L7	Peptidase_M23 domain-containing protein (Fragment)	NA
UHGV-0104578_5	eggNOG-mapper	1172188.KB911820_gene2858	Transglycosylase SLT domain	NA
UHGV-0104578_5	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0104578_5	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0104578_5	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0104578_6	PHROG	phrog_2038	upper collar connector	connector
UHGV-0104578_6	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0104578_6	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0104578_6	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0104578_6	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0104578_8	Structural annotation	PF12708, NF007517, COG3420	NA	NA
UHGV-0104578_9	PHROG	phrog_2150	terminase	head and packaging
UHGV-0104578_9	UniRef90	UniRef90_A0A843GFY2	Phage DNA encapsidation protein	NA
UHGV-0104578_9	eggNOG-mapper	1162304.I3PV13_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0104578_9	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0104578_9	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0104578_10	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0104578_10	Structural annotation	PF17427	NA	NA
UHGV-0104578_11	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0104578_11	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0104578_11	UniRef90	UniRef90_A0A843GHP1	DNA-directed DNA polymerase	NA
UHGV-0104578_11	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0104578_11	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA