UHGV-0104585

Genome information

Genome length 24,550 bps

CDS count 31

Completeness 61.54% (medium-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104585
vOTU ID	vOTU-042370
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_251183
BioSample	SAMEA3708803
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.01
Jumbo phage	No

Genome content
Genome length	24,550 bps
GC content	44.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	93.51%
Average CDS length	741.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104585_1	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0104585_1	PHROG	phrog_7	endolysin	lysis
UHGV-0104585_1	UniRef90	UniRef90_R5IS13	Lysozyme	NA
UHGV-0104585_1	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0104585_1	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0104585_1	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0104585_1	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0104585_1	HAMAP	MF_04110	Endolysin	NA
UHGV-0104585_1	Structural annotation	PF19127, MF_04110, TIGR04035, COG3772	NA	NA
UHGV-0104585_2	PHROG	phrog_1129	holin	lysis
UHGV-0104585_2	UniRef90	UniRef90_A0A3R6U6I1	Enolase	NA
UHGV-0104585_2	eggNOG-mapper	1321782.HMPREF1986_00360	NA	NA
UHGV-0104585_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0104585_2	Structural annotation	PF06946	NA	NA
UHGV-0104585_3	PHROG	phrog_4105	NA	unknown function
UHGV-0104585_3	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0104585_6	PHROG	phrog_16164	NA	unknown function
UHGV-0104585_6	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0104585_6	Structural annotation	PF17813, NF032891	NA	NA
UHGV-0104585_7	PHROG	phrog_1382	NA	unknown function
UHGV-0104585_7	UniRef90	UniRef90_A0A6N9P4T5	ASCH domain-containing protein	NA
UHGV-0104585_7	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0104585_7	Structural annotation	NF040910	NA	NA
UHGV-0104585_8	PHROG	phrog_12931	NA	unknown function
UHGV-0104585_8	eggNOG-mapper	610130.Closa_1412	NA	NA
UHGV-0104585_11	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0104585_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0104585_11	UniRef90	UniRef90_A0A416L1N4	Integrase	NA
UHGV-0104585_11	eggNOG-mapper	610130.Closa_3343	Belongs to the 'phage' integrase family	NA
UHGV-0104585_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104585_11	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0104585_11	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0104585_12	PHROG	phrog_2012	minor tail protein	tail
UHGV-0104585_14	PHROG	phrog_18190	NA	unknown function
UHGV-0104585_14	UniRef90	UniRef90_R5ILV2	Peptidase S74 domain-containing protein	NA
UHGV-0104585_14	eggNOG-mapper	1298920.KI911353_gene2679	NA	NA
UHGV-0104585_14	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0104585_14	Structural annotation	PF14594, NF033848, COG3501	NA	NA
UHGV-0104585_15	PHROG	phrog_1194	NA	unknown function
UHGV-0104585_15	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-0104585_15	Pfam	PF20458	NA	DUF6711
UHGV-0104585_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0104585_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0104585_16	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0104585_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0104585_16	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0104585_17	PHROG	phrog_706	NA	unknown function
UHGV-0104585_17	UniRef90	UniRef90_UPI0011DC8B0C	Gp15 family bacteriophage protein	NA
UHGV-0104585_17	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0104585_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0104585_17	Structural annotation	PF06854	NA	NA
UHGV-0104585_18	PHROG	phrog_11299	NA	unknown function
UHGV-0104585_18	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-0104585_18	Structural annotation	PF10666	NA	NA
UHGV-0104585_19	PHROG	phrog_3099	NA	unknown function
UHGV-0104585_19	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0104585_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0104585_20	PHROG	phrog_3266	tail completion	connector
UHGV-0104585_20	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-0104585_20	Structural annotation	PF20765	NA	NA
UHGV-0104585_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0104585_21	UniRef90	UniRef90_UPI0015948E32	minor capsid protein	NA
UHGV-0104585_21	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-0104585_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0104585_21	Structural annotation	PF11114	NA	NA
UHGV-0104585_22	PHROG	phrog_3366	NA	unknown function
UHGV-0104585_22	eggNOG-mapper	411902.CLOBOL_00132	NA	NA
UHGV-0104585_22	Pfam	PF20536	NA	DUF6751
UHGV-0104585_22	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0104585_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0104585_23	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0104585_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0104585_24	UniRef90	UniRef90_A0A3R6X865	Phage major capsid protein	NA
UHGV-0104585_24	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-0104585_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0104585_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0104585_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0104585_24	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0104585_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0104585_25	UniRef90	UniRef90_UPI000E449396	phage scaffolding protein	NA
UHGV-0104585_25	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0104585_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0104585_25	Structural annotation	PF06810	NA	NA
UHGV-0104585_26	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0104585_26	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0104585_26	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0104585_27	PHROG	phrog_27009	NA	unknown function
UHGV-0104585_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0104585_28	UniRef90	UniRef90_UPI001D0859FA	phage minor capsid protein	NA
UHGV-0104585_28	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-0104585_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0104585_28	COG	COG2369	NA	NA
UHGV-0104585_28	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0104585_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0104585_29	UniRef90	UniRef90_A0A396QLL8	Phage portal protein	NA
UHGV-0104585_29	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0104585_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0104585_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0104585_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104585_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0104585_30	UniRef90	UniRef90_R5ILS3	Phage terminase large subunit PBSX family	NA
UHGV-0104585_30	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0104585_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0104585_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104585_30	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0104585_31	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0104585_31	UniRef90	UniRef90_R5J299	Phage terminase small subunit	NA
UHGV-0104585_31	eggNOG-mapper	1235798.C817_03483	DNA packaging	NA
UHGV-0104585_31	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0104585_31	COG	COG5484	NA	NA
UHGV-0104585_31	Structural annotation	NF040601, COG5484	NA	NA