UHGV-0104588

Genome information

Genome length 35,616 bps

CDS count 69

Completeness 79.97% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104588
vOTU ID	vOTU-022574
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_248417
BioSample	SAMEA3708788
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.44
Jumbo phage	No

Genome content
Genome length	35,616 bps
GC content	48.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	90.28%
Average CDS length	469.48 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104588_1	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0104588_1	COG	COG5412	Phage-related protein	NA
UHGV-0104588_2	PHROG	phrog_706	NA	unknown function
UHGV-0104588_2	UniRef90	UniRef90_A0A1C6CG51	Bacteriophage Gp15 protein	NA
UHGV-0104588_2	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0104588_2	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0104588_2	Structural annotation	PF06854	NA	NA
UHGV-0104588_3	PHROG	phrog_11299	NA	unknown function
UHGV-0104588_3	eggNOG-mapper	476272.RUMHYD_01783	NA	NA
UHGV-0104588_3	Structural annotation	PF10666	NA	NA
UHGV-0104588_4	PHROG	phrog_3099	NA	unknown function
UHGV-0104588_4	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0104588_4	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0104588_5	PHROG	phrog_3266	tail completion	connector
UHGV-0104588_5	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0104588_5	Structural annotation	PF12691	NA	NA
UHGV-0104588_6	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0104588_6	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0104588_6	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0104588_6	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0104588_6	Structural annotation	PF11114	NA	NA
UHGV-0104588_7	PHROG	phrog_3366	NA	unknown function
UHGV-0104588_7	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0104588_7	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0104588_9	PHROG	phrog_8680	NA	unknown function
UHGV-0104588_9	UniRef90	UniRef90_A0A412EKN2	NA	NA
UHGV-0104588_9	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0104588_9	Pfam	PF14386	NA	DUF4417
UHGV-0104588_9	Structural annotation	PF14386	NA	NA
UHGV-0104588_11	PHROG	phrog_18218	NA	unknown function
UHGV-0104588_11	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0104588_11	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0104588_11	Structural annotation	PF06946	NA	NA
UHGV-0104588_12	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0104588_12	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0104588_12	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0104588_12	Pfam	PF14359	NA	DUF4406
UHGV-0104588_12	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0104588_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0104588_13	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0104588_14	PHROG	phrog_247	major head protein	head and packaging
UHGV-0104588_14	UniRef90	UniRef90_A0A3R6K7E9	Phage coat protein	NA
UHGV-0104588_14	eggNOG-mapper	1292035.H476_1014	NA	NA
UHGV-0104588_14	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0104588_14	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0104588_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0104588_15	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0104588_15	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0104588_17	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0104588_18	PHROG	phrog_20016	NA	unknown function
UHGV-0104588_18	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-0104588_18	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0104588_18	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0104588_20	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0104588_22	PHROG	phrog_21718	NA	unknown function
UHGV-0104588_22	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0104588_23	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0104588_23	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0104588_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0104588_24	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0104588_24	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0104588_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0104588_24	COG	COG2369	NA	NA
UHGV-0104588_24	Structural annotation	PF06152	NA	NA
UHGV-0104588_25	UniRef90	UniRef90_R7NA43	ATP synthase B chain	NA
UHGV-0104588_26	UniRef90	UniRef90_A0A6L5T7F3	NA	NA
UHGV-0104588_26	eggNOG-mapper	479437.Elen_2641	NA	NA
UHGV-0104588_26	Pfam	PF19789	NA	DUF6273
UHGV-0104588_26	Structural annotation	PF19789	NA	NA
UHGV-0104588_27	PHROG	phrog_16164	NA	unknown function
UHGV-0104588_27	eggNOG-mapper	742733.HMPREF9469_01804	NA	NA
UHGV-0104588_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0104588_28	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0104588_28	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0104588_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0104588_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104588_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0104588_29	UniRef90	UniRef90_A0A412EKJ9	PBSX family phage terminase large subunit	NA
UHGV-0104588_29	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0104588_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0104588_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0104588_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0104588_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0104588_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104588_29	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0104588_30	eggNOG-mapper	428125.CLOLEP_01366	NA	NA
UHGV-0104588_31	PHROG	phrog_33130	NA	unknown function
UHGV-0104588_31	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0104588_31	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0104588_33	UniRef90	UniRef90_A0A1C6CDR6	HTH cro/C1-type domain-containing protein	NA
UHGV-0104588_33	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0104588_34	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104588_41	PHROG	phrog_874	NA	unknown function
UHGV-0104588_41	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0104588_41	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0104588_42	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0104588_43	PHROG	phrog_8684	NA	unknown function
UHGV-0104588_43	UniRef90	UniRef90_A0A416VA40	YopX domain-containing protein	NA
UHGV-0104588_43	Pfam	PF09643	YopX protein	YopX
UHGV-0104588_44	PHROG	phrog_7839	NA	unknown function
UHGV-0104588_44	eggNOG-mapper	665956.HMPREF1032_03091	NA	NA
UHGV-0104588_44	Structural annotation	PF08860	NA	NA
UHGV-0104588_45	UniRef90	UniRef90_A0A6L5YG37	NA	NA
UHGV-0104588_45	Pfam	PF04448	NA	DUF551
UHGV-0104588_46	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0104588_46	UniRef90	UniRef90_A0A349YFI2	DNA cytosine methyltransferase	NA
UHGV-0104588_46	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0104588_46	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0104588_46	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0104588_47	Structural annotation	PF09870, COG4466	NA	NA
UHGV-0104588_48	Structural annotation	PF04936	NA	NA
UHGV-0104588_49	PHROG	phrog_25231	NA	unknown function
UHGV-0104588_49	Structural annotation	PF04936	NA	NA
UHGV-0104588_50	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0104588_51	PHROG	phrog_15768	NA	unknown function
UHGV-0104588_51	UniRef90	UniRef90_C0DA60	NA	NA
UHGV-0104588_51	eggNOG-mapper	33035.JPJF01000122_gene2459	NA	NA
UHGV-0104588_51	AcrCatalog	cluster_38323	NA	NA
UHGV-0104588_51	Pfam	PF19808	NA	DUF6291
UHGV-0104588_51	Structural annotation	PF19808	NA	NA
UHGV-0104588_52	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0104588_52	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0104588_52	UniRef90	UniRef90_R5GFL1	Putative prophage Lp2 protein 24	NA
UHGV-0104588_52	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0104588_52	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0104588_52	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0104588_53	PHROG	phrog_2113	NA	unknown function
UHGV-0104588_53	Structural annotation	PF21715, TIGR04176, COG1654	NA	NA
UHGV-0104588_54	PHROG	phrog_7566	NA	unknown function
UHGV-0104588_54	UniRef90	UniRef90_A0A417GG52	Phosphoenolpyruvate carboxykinase	NA
UHGV-0104588_54	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0104588_55	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0104588_55	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0104588_55	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0104588_56	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0104588_56	UniRef90	UniRef90_A0A1C6CBK6	ERF superfamily	NA
UHGV-0104588_56	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0104588_56	Pfam	PF04404	ERF superfamily	ERF
UHGV-0104588_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0104588_56	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0104588_57	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0104588_57	UniRef90	UniRef90_A0A1C6CBG4	Siphovirus Gp157	NA
UHGV-0104588_57	eggNOG-mapper	158822.LH89_20330	Siphovirus Gp157	NA
UHGV-0104588_57	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0104588_57	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0104588_60	PHROG	phrog_5070	NA	unknown function
UHGV-0104588_60	UniRef90	UniRef90_A0A3A9AGI5	Polymer-forming cytoskeletal protein	NA
UHGV-0104588_60	eggNOG-mapper	768710.DesyoDRAFT_1067	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0104588_60	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0104588_60	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0104588_64	UniRef90	UniRef90_UPI00129E96E1	helix-turn-helix transcriptional regulator	NA
UHGV-0104588_64	eggNOG-mapper	397291.C804_01600	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0104588_64	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0104588_64	Structural annotation	PF01381, NF000090, COG3655	NA	NA
UHGV-0104588_65	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0104588_65	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0104588_65	UniRef90	UniRef90_A0A1C6C9V1	Predicted transcriptional regulator	NA
UHGV-0104588_65	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-0104588_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104588_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104588_65	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0104588_67	UniRef90	UniRef90_UPI00189800B1	LITAF-like zinc ribbon domain-containing protein	NA
UHGV-0104588_67	eggNOG-mapper	521095.Apar_1206	NA	NA
UHGV-0104588_67	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0104588_68	eggNOG-mapper	1408311.JNJM01000013_gene2316	NA	NA
UHGV-0104588_69	KOfam	K14059	int; integrase	NA
UHGV-0104588_69	PHROG	phrog_1	integrase	integration and excision
UHGV-0104588_69	UniRef90	UniRef90_A0A1C6C970	Site-specific recombinase XerD	NA
UHGV-0104588_69	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0104588_69	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104588_69	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0104588_69	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA