UHGV-0104596

Genome information

Genome length 31,293 bps

CDS count 52

Completeness 90.71% (high-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104596
vOTU ID	vOTU-062619
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_248444
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.72
Jumbo phage	No

Genome content
Genome length	31,293 bps
GC content	44.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.63%
Average CDS length	557.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104596_1	KOfam	K14059	int; integrase	NA
UHGV-0104596_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0104596_1	UniRef90	UniRef90_A0A174CFI2	Tyrosine recombinase XerD	NA
UHGV-0104596_1	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0104596_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0104596_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104596_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0104596_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0104596_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0104596_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104596_3	UniRef90	UniRef90_A0A316NRL5	XRE family transcriptional regulator	NA
UHGV-0104596_3	eggNOG-mapper	864563.HMPREF9166_1835	Helix-turn-helix XRE-family like proteins	NA
UHGV-0104596_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104596_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104596_3	Structural annotation	PF01381, MF_02017, NF007257, COG1396	NA	NA
UHGV-0104596_4	UniRef90	UniRef90_UPI001C2729A1	helix-turn-helix domain-containing protein	NA
UHGV-0104596_4	eggNOG-mapper	1298920.KI911353_gene527	NA	NA
UHGV-0104596_4	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0104596_9	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0104596_9	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0104596_9	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0104596_9	Structural annotation	PF21578, COG2092	NA	NA
UHGV-0104596_10	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0104596_10	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0104596_10	UniRef90	UniRef90_R9MXA6	RNase H type-1 domain-containing protein	NA
UHGV-0104596_10	eggNOG-mapper	1235800.C819_02257	RNase H	NA
UHGV-0104596_10	Pfam	PF00075	RNase H	RNase_H
UHGV-0104596_10	COG	COG0328	Ribonuclease HI	NA
UHGV-0104596_10	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0104596_11	PHROG	phrog_15077	NA	unknown function
UHGV-0104596_11	UniRef90	UniRef90_A0A354J797	RNA_pol_A_CTD domain-containing protein	NA
UHGV-0104596_11	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0104596_11	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0104596_12	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0104596_12	UniRef90	UniRef90_A0A4S2AEU6	NA	NA
UHGV-0104596_12	Pfam	PF14359	NA	DUF4406
UHGV-0104596_12	Structural annotation	PF14359, TIGR02133, COG3613	NA	NA
UHGV-0104596_14	eggNOG-mapper	1449050.JNLE01000003_gene3902	NA	NA
UHGV-0104596_14	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-0104596_15	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0104596_15	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0104596_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0104596_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0104596_18	UniRef90	UniRef90_R5KD39	Single-stranded DNA-binding protein	NA
UHGV-0104596_18	eggNOG-mapper	357809.Cphy_3773	Single-stranded DNA-binding protein	NA
UHGV-0104596_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0104596_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0104596_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0104596_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0104596_18	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0104596_20	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0104596_20	Structural annotation	PF09038	NA	NA
UHGV-0104596_21	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104596_21	UniRef90	UniRef90_R5ZJF1	HNH endonuclease	NA
UHGV-0104596_21	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0104596_21	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0104596_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0104596_21	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0104596_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0104596_23	UniRef90	UniRef90_UPI000E44A7EA	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0104596_23	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0104596_23	Structural annotation	MF_00307	NA	NA
UHGV-0104596_26	UniRef90	UniRef90_UPI00156EF43B	chemotaxis protein	NA
UHGV-0104596_26	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0104596_27	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104596_27	UniRef90	UniRef90_A0A6N3HNE1	HNH endonuclease	NA
UHGV-0104596_27	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-0104596_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0104596_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0104596_27	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0104596_28	PHROG	phrog_104	portal protein	head and packaging
UHGV-0104596_28	UniRef90	UniRef90_A0A496NZD1	Phage portal protein	NA
UHGV-0104596_28	eggNOG-mapper	665950.HMPREF1025_02537	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0104596_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0104596_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0104596_29	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0104596_29	UniRef90	UniRef90_UPI001F3BD4CE	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0104596_29	eggNOG-mapper	908337.HMPREF9257_0543	NA	NA
UHGV-0104596_29	NCBIFam	TIGR01643.1	YD repeat-containing protein	NA
UHGV-0104596_30	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0104596_31	PHROG	phrog_3675	NA	unknown function
UHGV-0104596_31	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-0104596_31	eggNOG-mapper	1120978.KB894082_gene1061	YjcQ protein	NA
UHGV-0104596_31	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0104596_31	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0104596_32	PHROG	phrog_17688	NA	unknown function
UHGV-0104596_32	UniRef90	UniRef90_UPI001F2435FC	terminase large subunit	NA
UHGV-0104596_32	eggNOG-mapper	1280698.AUJS01000007_gene1036	phage terminase, large subunit	NA
UHGV-0104596_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0104596_32	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0104596_33	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0104596_33	UniRef90	UniRef90_A0A890GYE3	NA	NA
UHGV-0104596_33	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-0104596_33	Pfam	PF14265	NA	DUF4355
UHGV-0104596_33	Structural annotation	PF14265	NA	NA
UHGV-0104596_34	PHROG	phrog_32396	NA	unknown function
UHGV-0104596_34	UniRef90	UniRef90_A0A1C5MLP2	Phage capsid family	NA
UHGV-0104596_34	eggNOG-mapper	1280698.AUJS01000007_gene1038	Phage capsid family	NA
UHGV-0104596_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0104596_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0104596_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0104596_36	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0104596_36	UniRef90	UniRef90_UPI000F782A99	phage Gp19/Gp15/Gp42 family protein	NA
UHGV-0104596_36	eggNOG-mapper	525255.HMPREF0077_0988	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0104596_36	Pfam	PF09355	NA	Phage_Gp19
UHGV-0104596_36	Structural annotation	PF09355	NA	NA
UHGV-0104596_37	PHROG	phrog_501	head closure Hc1	connector
UHGV-0104596_37	UniRef90	UniRef90_G2SN45	NA	NA
UHGV-0104596_37	eggNOG-mapper	1069534.LRC_07300	NA	NA
UHGV-0104596_37	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0104596_38	PHROG	phrog_387	neck protein	connector
UHGV-0104596_38	UniRef90	UniRef90_A0A380KNT4	NA	NA
UHGV-0104596_38	eggNOG-mapper	768726.HMPREF9178_1059	NA	NA
UHGV-0104596_39	PHROG	phrog_123	tail terminator	connector
UHGV-0104596_39	UniRef90	UniRef90_F3MWA9	NA	NA
UHGV-0104596_39	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0104596_39	Structural annotation	PF06141	NA	NA
UHGV-0104596_40	PHROG	phrog_117	major tail protein	tail
UHGV-0104596_40	UniRef90	UniRef90_A0A1Y4TGT6	Phage tail protein	NA
UHGV-0104596_40	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-0104596_40	COG	COG5492	NA	NA
UHGV-0104596_40	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0104596_41	PHROG	phrog_1526	NA	unknown function
UHGV-0104596_42	PHROG	phrog_1633	NA	unknown function
UHGV-0104596_42	UniRef90	UniRef90_UPI000A18F792	NA	NA
UHGV-0104596_42	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-0104596_42	Pfam	PF17318	NA	DUF5361
UHGV-0104596_42	Structural annotation	PF17318	NA	NA
UHGV-0104596_43	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0104596_43	eggNOG-mapper	1321784.HMPREF1987_01082	phage tail tape measure protein	NA
UHGV-0104596_43	COG	COG1511	NA	NA
UHGV-0104596_43	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0104596_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0104596_44	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0104596_44	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-0104596_44	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0104596_45	PHROG	phrog_538	minor tail protein	tail
UHGV-0104596_45	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0104596_45	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0104596_45	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0104596_45	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0104596_46	PHROG	phrog_9994	NA	unknown function
UHGV-0104596_46	UniRef90	UniRef90_UPI000C76CD77	H-type lectin domain-containing protein	NA
UHGV-0104596_46	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0104596_46	Structural annotation	PF20747	NA	NA
UHGV-0104596_48	PHROG	phrog_4105	NA	unknown function
UHGV-0104596_48	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-0104596_49	PHROG	phrog_1129	holin	lysis
UHGV-0104596_49	UniRef90	UniRef90_UPI001AA104CE	phage holin family protein	NA
UHGV-0104596_49	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-0104596_49	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0104596_49	Structural annotation	PF16079	NA	NA
UHGV-0104596_50	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0104596_50	PHROG	phrog_3088	amidase	lysis
UHGV-0104596_50	UniRef90	UniRef90_A0A1G4FJT0	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0104596_50	eggNOG-mapper	457396.CSBG_00241	Ami_2	NA
UHGV-0104596_50	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0104596_50	Pfam	PF13946	NA	DUF4214
UHGV-0104596_50	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0104596_51	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0104596_51	UniRef90	UniRef90_A0A7C6WAW6	Helix-turn-helix domain-containing protein	NA
UHGV-0104596_51	eggNOG-mapper	888727.HMPREF9092_0491	Helix-turn-helix	NA
UHGV-0104596_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104596_51	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0104596_52	KOfam	K02346	dinB; DNA polymerase IV [EC:2.7.7.7]	NA
UHGV-0104596_52	PHROG	phrog_1268	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0104596_52	UniRef90	UniRef90_R7H9Q1	DNA polymerase IV	NA
UHGV-0104596_52	eggNOG-mapper	585394.RHOM_08890	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII	NA
UHGV-0104596_52	Pfam	PF00817	impB/mucB/samB family	IMS
UHGV-0104596_52	Pfam	PF11798	IMS family HHH motif	IMS_HHH
UHGV-0104596_52	Pfam	PF11799	impB/mucB/samB family C-terminal domain	IMS_C
UHGV-0104596_52	COG	COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	NA
UHGV-0104596_52	HAMAP	MF_01113	DNA polymerase IV [dinB]	NA
UHGV-0104596_52	Structural annotation	PF00817, PF11799, PF21704, MF_01113, NF002848, COG0389	NA	NA