UHGV-0104668

Genome information

vOTU vOTU-019505

Genome length 33,449 bps

CDS count 51

Completeness 66.41% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104668
vOTU ID	vOTU-019505
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_257275
BioSample	SAMEA3708799
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.41% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.55
Jumbo phage	No

Genome content
Genome length	33,449 bps
GC content	33.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.05%
Average CDS length	614.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104668_2	Structural annotation	PF07408, MF_01560, NF010187, COG4838	NA	NA
UHGV-0104668_4	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0104668_4	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0104668_5	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0104668_5	PHROG	phrog_5696	NA	unknown function
UHGV-0104668_5	UniRef90	UniRef90_A0A6N9P8V9	SAM-dependent DNA methyltransferase	NA
UHGV-0104668_5	eggNOG-mapper	742733.HMPREF9469_05064	N-6 DNA Methylase	NA
UHGV-0104668_5	PADLOC	MTase_I_00004	Type I methyltransferase	RM
UHGV-0104668_5	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0104668_5	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0104668_5	Structural annotation	COG0286	NA	NA
UHGV-0104668_6	Structural annotation	PF18358	NA	NA
UHGV-0104668_9	PHROG	phrog_2506	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104668_9	UniRef90	UniRef90_A0A5D3IBF8	PDDEXK_1 domain-containing protein	NA
UHGV-0104668_9	eggNOG-mapper	1499968.TCA2_4616	DNA catabolic process, exonucleolytic	NA
UHGV-0104668_9	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-0104668_9	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0104668_10	Structural annotation	PF01775, MF_00273, NF010188, COG2157	NA	NA
UHGV-0104668_11	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0104668_11	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0104668_11	UniRef90	UniRef90_UPI001BCFCE00	recombinase RecA	NA
UHGV-0104668_11	eggNOG-mapper	1172190.M947_08195	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0104668_11	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0104668_11	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0104668_11	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0104668_12	PHROG	phrog_236	nucleotide kinase	other
UHGV-0104668_12	UniRef90	UniRef90_A0A843HZM9	NA	NA
UHGV-0104668_12	eggNOG-mapper	641149.HMPREF9016_01178	NA	NA
UHGV-0104668_12	Pfam	PF11753	NA	DUF3310
UHGV-0104668_13	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0104668_13	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0104668_13	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-0104668_13	eggNOG-mapper	224324.aq_1008	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-0104668_13	Pfam	PF02811	PHP domain	PHP
UHGV-0104668_13	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0104668_13	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0104668_13	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0104668_13	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0104668_13	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0104668_13	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0104668_15	Structural annotation	PF08804	NA	NA
UHGV-0104668_17	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0104668_17	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0104668_17	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0104668_17	eggNOG-mapper	360106.CFF8240_1745	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0104668_17	PADLOC	drt-UG29	DRT	DRT
UHGV-0104668_17	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0104668_17	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0104668_17	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0104668_17	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0104668_19	Structural annotation	PF06003, MF_01077, NF037951, COG1862	NA	NA
UHGV-0104668_22	Structural annotation	PF01649	NA	NA
UHGV-0104668_25	Structural annotation	PF00210, NF007638, COG1528	NA	NA
UHGV-0104668_27	PHROG	phrog_16490	NA	unknown function
UHGV-0104668_27	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0104668_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0104668_30	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-0104668_33	PHROG	phrog_1220	head protein	head and packaging
UHGV-0104668_33	UniRef90	UniRef90_R6SMG3	Conserved domain protein	NA
UHGV-0104668_33	eggNOG-mapper	1033738.CAEP01000018_gene3685	NA	NA
UHGV-0104668_33	Structural annotation	PF20747	NA	NA
UHGV-0104668_34	PHROG	phrog_538	minor tail protein	tail
UHGV-0104668_34	UniRef90	UniRef90_A0A1I7FBJ0	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0104668_34	eggNOG-mapper	573061.Clocel_2427	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0104668_34	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0104668_34	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0104668_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0104668_35	UniRef90	UniRef90_A0A6N3FT50	Phage tail protein	NA
UHGV-0104668_35	eggNOG-mapper	755731.Clo1100_3575	Phage tail protein	NA
UHGV-0104668_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-0104668_35	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0104668_36	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0104668_36	UniRef90	UniRef90_A0A1Q9JFY8	Phage tail tape measure protein	NA
UHGV-0104668_36	eggNOG-mapper	1410670.JHXF01000015_gene2302	Phage tail tape measure protein, TP901 family	NA
UHGV-0104668_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0104668_36	Pfam	PF07443	HepA-related protein (HARP)	HARP
UHGV-0104668_36	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0104668_36	COG	COG5283	Phage-related tail protein	NA
UHGV-0104668_36	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0104668_37	PHROG	phrog_6280	NA	unknown function
UHGV-0104668_37	UniRef90	UniRef90_UPI0011579C94	esterase	NA
UHGV-0104668_37	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-0104668_38	PHROG	phrog_6686	tail tube protein	tail
UHGV-0104668_38	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0104668_38	eggNOG-mapper	748727.CLJU_c31250	NA	NA
UHGV-0104668_38	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0104668_39	PHROG	phrog_7585	NA	unknown function
UHGV-0104668_39	eggNOG-mapper	1196322.A370_04060	NA	NA
UHGV-0104668_39	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0104668_40	UniRef90	UniRef90_UPI00164BA869	HK97 gp10 family phage protein	NA
UHGV-0104668_40	eggNOG-mapper	580331.Thit_1383	NA	NA
UHGV-0104668_40	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0104668_41	PHROG	phrog_8435	NA	unknown function
UHGV-0104668_41	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0104668_42	PHROG	phrog_4020	NA	unknown function
UHGV-0104668_42	eggNOG-mapper	445335.CBN_3083	NA	NA
UHGV-0104668_43	Structural annotation	PF07498	NA	NA
UHGV-0104668_44	PHROG	phrog_29	major head protein	head and packaging
UHGV-0104668_44	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0104668_44	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0104668_44	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0104668_44	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0104668_45	PHROG	phrog_909	major head protein	head and packaging
UHGV-0104668_45	UniRef90	UniRef90_A0A512PLH0	Putative structural protein-phage associated	NA
UHGV-0104668_45	eggNOG-mapper	1158607.UAU_01759	NA	NA
UHGV-0104668_45	Structural annotation	PF02924	NA	NA
UHGV-0104668_46	Structural annotation	MF_02110	NA	NA
UHGV-0104668_47	Structural annotation	TIGR00310	NA	NA
UHGV-0104668_49	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0104668_49	UniRef90	UniRef90_A0A1G9U003	Phage Mu protein F like protein	NA
UHGV-0104668_49	eggNOG-mapper	748727.CLJU_c31360	Portal protein	NA
UHGV-0104668_49	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0104668_49	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0104668_51	PHROG	phrog_64	portal protein	head and packaging
UHGV-0104668_51	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-0104668_51	eggNOG-mapper	536232.CLM_2528	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0104668_51	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0104668_51	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA