UHGV-0104671

Genome information

Genome length 31,353 bps

CDS count 46

Completeness 100.00% (complete)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104671
vOTU ID	vOTU-006204
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_257295
BioSample	SAMEA3708799
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.96
Jumbo phage	No

Genome content
Genome length	31,353 bps
GC content	57.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.13%
Average CDS length	638.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104671_1	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-0104671_3	PHROG	phrog_24189	NA	unknown function
UHGV-0104671_3	UniRef90	UniRef90_UPI001C3C9212	NA	NA
UHGV-0104671_3	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-0104671_3	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0104671_3	Structural annotation	PF14297, TIGR01714, COG1959	NA	NA
UHGV-0104671_5	PHROG	phrog_24658	NA	unknown function
UHGV-0104671_5	UniRef90	UniRef90_R7D8J1	Gp50	NA
UHGV-0104671_8	PHROG	phrog_236	nucleotide kinase	other
UHGV-0104671_8	UniRef90	UniRef90_A0A4S2F3I0	NA	NA
UHGV-0104671_8	eggNOG-mapper	1121866.AUGK01000003_gene1417	NA	NA
UHGV-0104671_8	Pfam	PF11753	NA	DUF3310
UHGV-0104671_9	PHROG	phrog_421	NA	unknown function
UHGV-0104671_9	UniRef90	UniRef90_A0A4S2F4E6	NA	NA
UHGV-0104671_9	eggNOG-mapper	1235794.C811_00585	NA	NA
UHGV-0104671_9	Pfam	PF10979	NA	DUF2786
UHGV-0104671_9	Structural annotation	PF10979	NA	NA
UHGV-0104671_10	KOfam	K14059	int; integrase	NA
UHGV-0104671_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0104671_10	UniRef90	UniRef90_A0A4S2F0A5	Site-specific integrase	NA
UHGV-0104671_10	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-0104671_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104671_10	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0104671_10	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0104671_11	PHROG	phrog_21723	NA	unknown function
UHGV-0104671_11	UniRef90	UniRef90_A0A4S2EZV5	Integration host factor	NA
UHGV-0104671_11	eggNOG-mapper	863239.AFIZ01000022_gene2494	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits	NA
UHGV-0104671_11	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0104671_11	COG	COG0099	Ribosomal protein S13	NA
UHGV-0104671_11	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0104671_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0104671_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0104671_12	UniRef90	UniRef90_A0A4S2F1A6	Single-stranded DNA-binding protein	NA
UHGV-0104671_12	eggNOG-mapper	1034345.CAEM01000002_gene1212	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0104671_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0104671_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0104671_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0104671_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0104671_12	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0104671_14	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0104671_14	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0104671_14	UniRef90	UniRef90_A0A4S2EZX6	dUTP diphosphatase	NA
UHGV-0104671_14	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0104671_14	Pfam	PF00692	dUTPase	dUTPase
UHGV-0104671_14	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0104671_14	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0104671_14	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0104671_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0104671_15	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-0104671_15	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0104671_16	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0104671_16	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104671_16	UniRef90	UniRef90_A0A4S2F4H0	HNH endonuclease	NA
UHGV-0104671_16	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-0104671_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0104671_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0104671_17	PHROG	phrog_1066	NA	unknown function
UHGV-0104671_17	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0104671_17	Structural annotation	TIGR01558	NA	NA
UHGV-0104671_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0104671_18	UniRef90	UniRef90_A0A4S2F3I9	Terminase large subunit	NA
UHGV-0104671_18	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-0104671_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0104671_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0104671_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0104671_18	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0104671_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0104671_19	UniRef90	UniRef90_A0A4S2F4F4	Phage portal protein	NA
UHGV-0104671_19	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-0104671_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0104671_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0104671_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0104671_20	KOfam	K06904	NA	NA
UHGV-0104671_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0104671_20	UniRef90	UniRef90_A0A7C8FV10	HK97 family phage prohead protease	NA
UHGV-0104671_20	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-0104671_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0104671_20	COG	COG3740	Phage head maturation protease	NA
UHGV-0104671_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0104671_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0104671_21	UniRef90	UniRef90_A0A4S2EZW3	Phage major capsid protein	NA
UHGV-0104671_21	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-0104671_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0104671_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0104671_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0104671_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0104671_22	PHROG	phrog_5223	neck protein	connector
UHGV-0104671_22	UniRef90	UniRef90_A0A4S2F1B5	DNA-packaging protein	NA
UHGV-0104671_22	eggNOG-mapper	1094508.Tsac_2423	NA	NA
UHGV-0104671_23	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0104671_23	UniRef90	UniRef90_B6GDI0	Putative phage head-tail adaptor	NA
UHGV-0104671_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0104671_24	UniRef90	UniRef90_A0A7T9WC06	HK97 gp10 family phage protein	NA
UHGV-0104671_24	eggNOG-mapper	1154860.SAG0136_11460	NA	NA
UHGV-0104671_24	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0104671_25	eggNOG-mapper	471875.RUMLAC_02244	NA	NA
UHGV-0104671_25	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0104671_26	PHROG	phrog_88	major tail protein	tail
UHGV-0104671_26	UniRef90	UniRef90_B6GDH7	Phage major tail protein, phi13 family	NA
UHGV-0104671_26	eggNOG-mapper	445975.COLSTE_02157	phage major tail protein, phi13 family	NA
UHGV-0104671_26	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0104671_26	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0104671_27	Structural annotation	PF12363	NA	NA
UHGV-0104671_28	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0104671_28	PHROG	phrog_23464	NA	unknown function
UHGV-0104671_28	UniRef90	UniRef90_B6GDH5	TMP repeat protein	NA
UHGV-0104671_28	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-0104671_28	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0104671_28	Structural annotation	COG5280	NA	NA
UHGV-0104671_29	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0104671_29	UniRef90	UniRef90_A0A4S2F4G3	Phage tail family protein	NA
UHGV-0104671_29	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-0104671_29	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0104671_29	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0104671_29	COG	COG4722	Phage-related protein YomH	NA
UHGV-0104671_29	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0104671_30	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0104671_30	UniRef90	UniRef90_A0A4S2F0B7	Prophage_tail domain-containing protein	NA
UHGV-0104671_30	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-0104671_30	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0104671_30	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0104671_30	COG	COG4926	Phage-related protein	NA
UHGV-0104671_30	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0104671_31	eggNOG-mapper	445975.COLSTE_02152	NA	NA
UHGV-0104671_32	PHROG	phrog_19280	NA	unknown function
UHGV-0104671_32	UniRef90	UniRef90_A0A4S2F1C4	BppU_N domain-containing protein	NA
UHGV-0104671_32	eggNOG-mapper	445975.COLSTE_02151	NA	NA
UHGV-0104671_32	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0104671_32	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0104671_33	UniRef90	UniRef90_A0A4S2EZW7	NA	NA
UHGV-0104671_33	eggNOG-mapper	445975.COLSTE_02150	NA	NA
UHGV-0104671_33	Pfam	PF19789	NA	DUF6273
UHGV-0104671_33	Structural annotation	PF19789	NA	NA
UHGV-0104671_34	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0104671_34	eggNOG-mapper	445975.COLSTE_02149	NA	NA
UHGV-0104671_34	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-0104671_35	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0104671_35	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0104671_35	UniRef90	UniRef90_A0A4V3RRI7	RNA-directed DNA polymerase	NA
UHGV-0104671_35	eggNOG-mapper	445975.COLSTE_02147	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0104671_35	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0104671_35	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0104671_35	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0104671_35	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-0104671_36	PHROG	phrog_18593	NA	unknown function
UHGV-0104671_36	UniRef90	UniRef90_B6GDG6	Carbohydrate binding domain protein	NA
UHGV-0104671_36	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0104671_36	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0104671_36	Structural annotation	PF14600	NA	NA
UHGV-0104671_37	PHROG	phrog_4105	NA	unknown function
UHGV-0104671_38	PHROG	phrog_10091	holin	lysis
UHGV-0104671_38	UniRef90	UniRef90_A0A4S2F3K8	Phage holin	NA
UHGV-0104671_38	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0104671_38	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0104671_38	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0104671_38	COG	COG5546	NA	NA
UHGV-0104671_38	Structural annotation	COG5546	NA	NA
UHGV-0104671_39	UniRef90	UniRef90_UPI0013EF0CCF	C39 family peptidase	NA
UHGV-0104671_39	eggNOG-mapper	1280698.AUJS01000108_gene579	Papain-like cysteine protease AvrRpt2	NA
UHGV-0104671_39	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0104671_39	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0104671_39	Structural annotation	PF03412, NF033920, COG4990	NA	NA
UHGV-0104671_40	KOfam	K07273	acm; lysozyme	NA
UHGV-0104671_40	PHROG	phrog_291	endolysin	lysis
UHGV-0104671_40	UniRef90	UniRef90_A0A369PBE1	LysM domain-containing protein	NA
UHGV-0104671_40	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-0104671_40	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0104671_40	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0104671_40	Pfam	PF01476	LysM domain	LysM
UHGV-0104671_40	COG	COG1388	LysM repeat	NA
UHGV-0104671_40	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0104671_41	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0104671_41	PHROG	phrog_95	integrase	integration and excision
UHGV-0104671_41	UniRef90	UniRef90_A0A7K3KN63	Resolvase	NA
UHGV-0104671_41	eggNOG-mapper	445975.COLSTE_02191	Recombinase zinc beta ribbon domain	NA
UHGV-0104671_41	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0104671_41	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0104671_41	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0104671_41	Structural annotation	PF00239, NF041201, COG2452	NA	NA
UHGV-0104671_42	UniRef90	UniRef90_A0A5C5BR68	Helix-turn-helix transcriptional regulator	NA
UHGV-0104671_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0104671_42	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0104671_43	UniRef90	UniRef90_A0A1Y4G4T6	HTH cro/C1-type domain-containing protein	NA
UHGV-0104671_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0104671_43	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA