UHGV-0104673

Genome information

Genome length 32,238 bps

CDS count 51

Completeness 100.00% (complete)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104673
vOTU ID	vOTU-045493
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_257292
BioSample	SAMEA3708799
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.19
Jumbo phage	No

Genome content
Genome length	32,238 bps
GC content	59.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	89.88%
Average CDS length	571.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104673_6	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0104673_6	Pfam	PF11195	NA	DUF2829
UHGV-0104673_6	Structural annotation	PF11195	NA	NA
UHGV-0104673_9	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0104673_9	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0104673_9	Structural annotation	PF09035, TIGR01764	NA	NA
UHGV-0104673_11	eggNOG-mapper	693746.OBV_24030	NA	NA
UHGV-0104673_12	PHROG	phrog_7566	NA	unknown function
UHGV-0104673_12	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0104673_12	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0104673_16	PHROG	phrog_38338	NA	unknown function
UHGV-0104673_16	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0104673_16	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-0104673_17	PHROG	phrog_8470	NA	unknown function
UHGV-0104673_17	UniRef90	UniRef90_UPI00195E492B	PcfJ domain-containing protein	NA
UHGV-0104673_17	eggNOG-mapper	1378168.N510_01842	PcfJ-like protein	NA
UHGV-0104673_17	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0104673_17	Structural annotation	PF14284	NA	NA
UHGV-0104673_18	PHROG	phrog_15609	NA	unknown function
UHGV-0104673_18	UniRef90	UniRef90_UPI001C12751D	NA	NA
UHGV-0104673_18	eggNOG-mapper	1501230.ET33_21155	NA	NA
UHGV-0104673_18	Pfam	PF11300	NA	DUF3102
UHGV-0104673_18	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0104673_18	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0104673_19	UniRef90	UniRef90_UPI001BB4805C	NA	NA
UHGV-0104673_21	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0104673_21	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-0104673_21	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0104673_22	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104673_22	UniRef90	UniRef90_D9SQ19	Prophage LambdaBa04, GP54	NA
UHGV-0104673_22	eggNOG-mapper	573061.Clocel_2442	HNH endonuclease	NA
UHGV-0104673_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0104673_23	PHROG	phrog_1066	NA	unknown function
UHGV-0104673_23	eggNOG-mapper	397290.C810_00417	NA	NA
UHGV-0104673_23	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0104673_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0104673_24	UniRef90	UniRef90_A0A2V2GHH0	Terminase large subunit	NA
UHGV-0104673_24	eggNOG-mapper	411470.RUMGNA_02062	NA	NA
UHGV-0104673_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0104673_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0104673_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0104673_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0104673_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0104673_25	UniRef90	UniRef90_A0A2V2GK98	Portal protein	NA
UHGV-0104673_25	eggNOG-mapper	397290.C810_00419	Phage portal protein	NA
UHGV-0104673_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0104673_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0104673_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0104673_26	KOfam	K06904	NA	NA
UHGV-0104673_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0104673_26	UniRef90	UniRef90_A0A2V2GKJ3	HK97 family phage prohead protease	NA
UHGV-0104673_26	eggNOG-mapper	1321814.HMPREF9089_00929	Caudovirus prohead serine protease	NA
UHGV-0104673_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0104673_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0104673_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0104673_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0104673_27	UniRef90	UniRef90_UPI001958A6F5	phage major capsid protein	NA
UHGV-0104673_27	eggNOG-mapper	1297617.JPJD01000020_gene308	Phage capsid family	NA
UHGV-0104673_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0104673_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0104673_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0104673_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0104673_28	PHROG	phrog_5223	neck protein	connector
UHGV-0104673_28	UniRef90	UniRef90_UPI000BEC4770	head-tail connector protein	NA
UHGV-0104673_28	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-0104673_28	Structural annotation	TIGR01560	NA	NA
UHGV-0104673_29	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0104673_29	UniRef90	UniRef90_UPI00189BA764	phage head closure protein	NA
UHGV-0104673_29	eggNOG-mapper	1121428.DESHY_20140___1	head-tail adaptor	NA
UHGV-0104673_29	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0104673_29	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0104673_30	UniRef90	UniRef90_UPI00156FE9DA	HK97 gp10 family phage protein	NA
UHGV-0104673_30	eggNOG-mapper	1123315.AUIP01000001_gene1428	NA	NA
UHGV-0104673_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0104673_31	Structural annotation	PF05657	NA	NA
UHGV-0104673_32	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0104673_32	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-0104673_32	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0104673_33	Structural annotation	PF17388	NA	NA
UHGV-0104673_34	eggNOG-mapper	411468.CLOSCI_00541	NA	NA
UHGV-0104673_35	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0104673_35	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0104673_35	UniRef90	UniRef90_A0A352DNT9	Phage tail tape measure protein	NA
UHGV-0104673_35	eggNOG-mapper	1304866.K413DRAFT_1234	tail tape measure protein	NA
UHGV-0104673_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0104673_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0104673_35	COG	COG5283	Phage-related tail protein	NA
UHGV-0104673_35	Structural annotation	PF20155	NA	NA
UHGV-0104673_36	UniRef90	UniRef90_R6QN45	Putative phage tail component domain protein	NA
UHGV-0104673_36	eggNOG-mapper	1235799.C818_01007	NA	NA
UHGV-0104673_36	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0104673_37	PHROG	phrog_3558	tail protein	tail
UHGV-0104673_37	UniRef90	UniRef90_A8SKQ2	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0104673_37	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0104673_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0104673_37	COG	COG4926	Phage-related protein	NA
UHGV-0104673_37	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0104673_38	PHROG	phrog_372	tail protein	tail
UHGV-0104673_38	UniRef90	UniRef90_A0A3E3E6C0	Pilus assembly protein	NA
UHGV-0104673_38	eggNOG-mapper	658655.HMPREF0988_00525	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0104673_38	Pfam	PF05895	NA	DUF859
UHGV-0104673_38	COG	COG4675	Phage tail collar domain	NA
UHGV-0104673_38	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0104673_39	PHROG	phrog_1863	NA	unknown function
UHGV-0104673_39	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0104673_40	PHROG	phrog_15594	NA	unknown function
UHGV-0104673_40	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0104673_40	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0104673_41	KOfam	K24492	LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3	NA
UHGV-0104673_41	PHROG	phrog_35892	NA	unknown function
UHGV-0104673_41	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0104673_41	Pfam	PF13855	Leucine rich repeat	LRR_8
UHGV-0104673_41	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0104673_42	PHROG	phrog_1129	holin	lysis
UHGV-0104673_42	UniRef90	UniRef90_R5D220	Putative holin	NA
UHGV-0104673_42	eggNOG-mapper	1007096.BAGW01000032_gene1582	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0104673_42	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0104673_42	Structural annotation	PF06946	NA	NA
UHGV-0104673_43	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0104673_43	PHROG	phrog_670	endolysin	lysis
UHGV-0104673_43	UniRef90	UniRef90_A0A252F607	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0104673_43	eggNOG-mapper	411463.EUBVEN_00418	Ami_2	NA
UHGV-0104673_43	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0104673_43	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0104673_43	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0104673_43	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0104673_44	KOfam	K14059	int; integrase	NA
UHGV-0104673_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0104673_44	UniRef90	UniRef90_A0A810Q0Y2	Tyr recombinase domain-containing protein	NA
UHGV-0104673_44	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0104673_44	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0104673_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104673_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0104673_44	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0104673_45	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0104673_45	UniRef90	UniRef90_A0A810QAJ3	HTH cro/C1-type domain-containing protein	NA
UHGV-0104673_45	eggNOG-mapper	1121017.AUFG01000002_gene2775	Helix-turn-helix XRE-family like proteins	NA
UHGV-0104673_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104673_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0104673_47	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0104673_47	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0104673_47	UniRef90	UniRef90_A0A810Q7W6	HicB family protein	NA
UHGV-0104673_47	eggNOG-mapper	1514668.JOOA01000001_gene181	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0104673_47	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0104673_47	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0104673_47	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0104673_48	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0104673_48	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0104673_48	UniRef90	UniRef90_R5D6Y4	HicB-like domain-containing protein	NA
UHGV-0104673_48	eggNOG-mapper	592031.GCWU000322_00750	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0104673_48	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0104673_48	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0104673_49	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0104673_49	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0104673_49	UniRef90	UniRef90_R5D9S0	HicB-like domain-containing protein	NA
UHGV-0104673_49	eggNOG-mapper	1235792.C808_03055	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0104673_49	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0104673_49	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0104673_50	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0104673_50	UniRef90	UniRef90_A0A810PZR5	Addiction module toxin, HicA family protein	NA
UHGV-0104673_50	eggNOG-mapper	1235792.C808_03054	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0104673_50	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0104673_50	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0104673_50	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0104673_51	UniRef90	UniRef90_A0A810Q5N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0104673_51	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0104673_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA