UHGV-0104708

Genome information

Genome length 36,242 bps

CDS count 64

Completeness 85.72% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104708
vOTU ID	vOTU-034026
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_265080
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.98
Jumbo phage	No

Genome content
Genome length	36,242 bps
GC content	54.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.35%
Average CDS length	509.58 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104708_3	PHROG	phrog_3558	tail protein	tail
UHGV-0104708_3	UniRef90	UniRef90_A0A844DGT5	Prophage_tail domain-containing protein	NA
UHGV-0104708_3	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-0104708_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0104708_3	COG	COG4926	Phage-related protein	NA
UHGV-0104708_3	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0104708_4	UniRef90	UniRef90_A0A7G9WF98	MtfA protein	NA
UHGV-0104708_4	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0104708_5	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0104708_5	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0104708_5	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0104708_5	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0104708_5	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0104708_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0104708_5	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0104708_7	PHROG	phrog_885	major tail protein	tail
UHGV-0104708_7	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0104708_7	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0104708_8	Structural annotation	PF13554	NA	NA
UHGV-0104708_9	PHROG	phrog_17977	NA	unknown function
UHGV-0104708_9	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0104708_9	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0104708_11	PHROG	phrog_247	major head protein	head and packaging
UHGV-0104708_11	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0104708_11	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0104708_11	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0104708_11	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0104708_12	Structural annotation	PF06810	NA	NA
UHGV-0104708_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0104708_14	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0104708_14	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0104708_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0104708_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0104708_15	PHROG	phrog_8680	NA	unknown function
UHGV-0104708_15	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0104708_15	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0104708_15	Pfam	PF14386	NA	DUF4417
UHGV-0104708_15	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0104708_18	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0104708_18	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0104708_18	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0104708_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0104708_18	COG	COG2369	NA	NA
UHGV-0104708_18	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0104708_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0104708_20	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0104708_20	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0104708_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0104708_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0104708_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104708_21	PHROG	phrog_10250	NA	unknown function
UHGV-0104708_21	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0104708_21	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0104708_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0104708_21	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0104708_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0104708_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104708_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0104708_22	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0104708_22	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0104708_22	Structural annotation	PF04218	NA	NA
UHGV-0104708_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0104708_23	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0104708_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0104708_25	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0104708_25	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0104708_25	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0104708_25	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0104708_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0104708_25	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0104708_26	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0104708_26	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0104708_26	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0104708_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0104708_26	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0104708_28	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0104708_29	Structural annotation	PF11417	NA	NA
UHGV-0104708_30	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0104708_30	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0104708_30	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-0104708_30	eggNOG-mapper	877411.JMMA01000002_gene2292	NA	NA
UHGV-0104708_30	Pfam	PF19808	NA	DUF6291
UHGV-0104708_30	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0104708_30	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0104708_30	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0104708_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0104708_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0104708_31	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0104708_31	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0104708_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0104708_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0104708_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0104708_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0104708_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0104708_32	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0104708_32	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0104708_32	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0104708_32	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0104708_34	Structural annotation	PF06718	NA	NA
UHGV-0104708_38	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0104708_39	PHROG	phrog_4433	NA	unknown function
UHGV-0104708_39	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0104708_39	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0104708_40	UniRef90	UniRef90_A0A843GUM6	Membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0104708_40	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0104708_40	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0104708_41	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0104708_41	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0104708_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0104708_42	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0104708_42	UniRef90	UniRef90_A0A2J4JRR8	Phage regulatory protein/antirepressor Ant	NA
UHGV-0104708_42	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0104708_42	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0104708_42	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0104708_42	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0104708_42	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0104708_42	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0104708_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104708_45	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0104708_45	eggNOG-mapper	1268072.PSAB_01325	Transcriptional regulator	NA
UHGV-0104708_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104708_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0104708_45	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0104708_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104708_46	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0104708_46	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0104708_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104708_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0104708_46	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0104708_49	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0104708_49	UniRef90	UniRef90_UPI000F643789	Ltp family lipoprotein	NA
UHGV-0104708_49	eggNOG-mapper	428127.EUBDOL_01530	Host cell surface-exposed lipoprotein	NA
UHGV-0104708_49	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0104708_49	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0104708_49	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0104708_49	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0104708_52	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0104708_52	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0104708_52	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0104708_53	KOfam	K14059	int; integrase	NA
UHGV-0104708_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0104708_53	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0104708_53	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0104708_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104708_53	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0104708_53	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0104708_55	Structural annotation	PF12510	NA	NA
UHGV-0104708_56	PHROG	phrog_20016	NA	unknown function
UHGV-0104708_56	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0104708_56	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0104708_56	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0104708_57	PHROG	phrog_16490	NA	unknown function
UHGV-0104708_57	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0104708_58	PHROG	phrog_22984	NA	unknown function
UHGV-0104708_59	PHROG	phrog_21718	NA	unknown function
UHGV-0104708_59	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0104708_60	PHROG	phrog_3754	NA	unknown function
UHGV-0104708_60	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0104708_61	UniRef90	UniRef90_UPI0004C44073	helix-turn-helix domain-containing protein	NA
UHGV-0104708_63	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0104708_63	Structural annotation	PF13560, NF040522	NA	NA