UHGV-0104741

Genome information

Genome length 53,877 bps

CDS count 88

Completeness 99.90% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104741
vOTU ID	vOTU-014789
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_255997
BioSample	SAMEA3708872
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.44
Jumbo phage	No

Genome content
Genome length	53,877 bps
GC content	51.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	88
CDS density	88.69%
Average CDS length	547.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104741_1	PHROG	phrog_924	NA	unknown function
UHGV-0104741_1	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-0104741_1	Pfam	PF04448	NA	DUF551
UHGV-0104741_1	Structural annotation	NF041588	NA	NA
UHGV-0104741_2	PHROG	phrog_11947	NA	unknown function
UHGV-0104741_4	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0104741_4	PHROG	phrog_200	lipoprotein	other
UHGV-0104741_4	UniRef90	UniRef90_A0A2V2D8I0	Membrane protease	NA
UHGV-0104741_4	eggNOG-mapper	1216932.CM240_0886	prohibitin homologues	NA
UHGV-0104741_4	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0104741_4	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0104741_4	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0104741_5	Structural annotation	TIGR03655	NA	NA
UHGV-0104741_10	UniRef90	UniRef90_A0A6B2M5F8	Helix-turn-helix transcriptional regulator	NA
UHGV-0104741_10	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0104741_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104741_12	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0104741_12	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0104741_12	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0104741_14	eggNOG-mapper	552398.HMPREF0866_02999	YodL-like	NA
UHGV-0104741_14	Pfam	PF18840	Large polyvalent protein associated domain 25	LPD25
UHGV-0104741_14	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0104741_15	eggNOG-mapper	1378168.N510_00538	NA	NA
UHGV-0104741_18	Pfam	PF04448	NA	DUF551
UHGV-0104741_18	Structural annotation	NF041588	NA	NA
UHGV-0104741_20	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104741_20	UniRef90	UniRef90_UPI000BFE1C74	AP2 domain-containing protein	NA
UHGV-0104741_20	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-0104741_20	Structural annotation	PF00847	NA	NA
UHGV-0104741_21	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0104741_21	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0104741_21	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0104741_21	COG	COG5410	NA	NA
UHGV-0104741_21	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0104741_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0104741_22	UniRef90	UniRef90_A0A1C6L010	Phage portal protein, SPP1 family	NA
UHGV-0104741_22	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0104741_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0104741_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0104741_25	PHROG	phrog_909	major head protein	head and packaging
UHGV-0104741_25	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0104741_26	PHROG	phrog_29	major head protein	head and packaging
UHGV-0104741_26	UniRef90	UniRef90_A0A7X5DZ98	Phage capsid protein	NA
UHGV-0104741_26	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0104741_26	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0104741_26	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0104741_27	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0104741_27	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0104741_27	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0104741_27	Structural annotation	TIGR01560	NA	NA
UHGV-0104741_28	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0104741_29	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0104741_30	PHROG	phrog_158	major tail protein	tail
UHGV-0104741_30	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA
UHGV-0104741_30	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0104741_31	UniRef90	UniRef90_UPI0018999178	NA	NA
UHGV-0104741_31	eggNOG-mapper	1211844.CBLM010000023_gene988	NA	NA
UHGV-0104741_31	Pfam	PF16478	NA	DUF5055
UHGV-0104741_31	Structural annotation	PF16478	NA	NA
UHGV-0104741_32	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0104741_33	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0104741_33	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0104741_33	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0104741_34	PHROG	phrog_1194	NA	unknown function
UHGV-0104741_34	eggNOG-mapper	1280689.AUJC01000003_gene977	NA	NA
UHGV-0104741_34	Pfam	PF20458	NA	DUF6711
UHGV-0104741_34	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0104741_35	PHROG	phrog_6616	tail protein	tail
UHGV-0104741_35	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0104741_35	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0104741_37	Structural annotation	PF09931	NA	NA
UHGV-0104741_38	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0104741_38	Structural annotation	PF10651, PF03426, NF033675, COG3470	NA	NA
UHGV-0104741_39	PHROG	phrog_24451	NA	unknown function
UHGV-0104741_39	eggNOG-mapper	931276.Cspa_c07590	NA	NA
UHGV-0104741_40	PHROG	phrog_28526	NA	unknown function
UHGV-0104741_40	UniRef90	UniRef90_A0A415D4T1	NA	NA
UHGV-0104741_40	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0104741_41	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0104741_41	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0104741_41	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0104741_41	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0104741_41	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0104741_43	PHROG	phrog_329	minor tail protein	tail
UHGV-0104741_43	UniRef90	UniRef90_A0A2V2FP98	SH3b domain-containing protein	NA
UHGV-0104741_43	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0104741_43	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0104741_43	Structural annotation	PF08239, PF00877, NF008096, COG4991, COG0791	NA	NA
UHGV-0104741_44	PHROG	phrog_37604	NA	unknown function
UHGV-0104741_44	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0104741_45	PHROG	phrog_6918	holin	lysis
UHGV-0104741_45	UniRef90	UniRef90_UPI001B07B9B9	phage holin, LLH family	NA
UHGV-0104741_45	eggNOG-mapper	1236976.JCM16418_1614	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0104741_45	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0104741_45	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0104741_46	Structural annotation	PF08281, TIGR02983	NA	NA
UHGV-0104741_47	PHROG	phrog_3754	NA	unknown function
UHGV-0104741_47	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0104741_48	PHROG	phrog_21718	NA	unknown function
UHGV-0104741_48	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0104741_49	PHROG	phrog_22984	NA	unknown function
UHGV-0104741_50	PHROG	phrog_16490	NA	unknown function
UHGV-0104741_50	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0104741_51	PHROG	phrog_20016	NA	unknown function
UHGV-0104741_51	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0104741_51	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0104741_51	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0104741_52	Structural annotation	PF12510	NA	NA
UHGV-0104741_53	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0104741_54	KOfam	K14059	int; integrase	NA
UHGV-0104741_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0104741_54	UniRef90	UniRef90_A0A1V5XHC9	Transposase	NA
UHGV-0104741_54	eggNOG-mapper	742738.HMPREF9460_04031	Phage integrase family	NA
UHGV-0104741_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0104741_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104741_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0104741_54	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0104741_55	PHROG	phrog_3675	NA	unknown function
UHGV-0104741_55	UniRef90	UniRef90_A0A1V5XCJ6	YjcQ protein	NA
UHGV-0104741_55	eggNOG-mapper	1235802.C823_04879	YjcQ protein	NA
UHGV-0104741_55	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0104741_55	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0104741_57	Structural annotation	PF10087, NF004049, COG4378	NA	NA
UHGV-0104741_59	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0104741_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104741_59	UniRef90	UniRef90_UPI00164CACBE	helix-turn-helix domain-containing protein	NA
UHGV-0104741_59	eggNOG-mapper	742741.HMPREF9475_00400	Helix-turn-helix XRE-family like proteins	NA
UHGV-0104741_59	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0104741_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104741_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104741_59	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0104741_61	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0104741_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104741_61	UniRef90	UniRef90_A0A316QGI6	XRE family transcriptional regulator	NA
UHGV-0104741_61	eggNOG-mapper	1029718.SFBM_0096	sequence-specific DNA binding	NA
UHGV-0104741_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104741_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104741_61	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0104741_62	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0104741_62	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0104741_62	UniRef90	UniRef90_UPI00137AC5A8	helix-turn-helix transcriptional regulator	NA
UHGV-0104741_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104741_62	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0104741_62	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0104741_63	Structural annotation	PF07878, COG3609	NA	NA
UHGV-0104741_64	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0104741_64	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0104741_65	eggNOG-mapper	563031.HMPREF0666_01114	NA	NA
UHGV-0104741_71	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104741_71	UniRef90	UniRef90_A0A1C5T6A1	Putative phage-type endonuclease	NA
UHGV-0104741_71	eggNOG-mapper	997296.PB1_16439	YqaJ-like viral recombinase domain	NA
UHGV-0104741_71	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0104741_71	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0104741_71	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0104741_71	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0104741_72	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0104741_72	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0104741_72	UniRef90	UniRef90_A0A7X7Z0P1	Recombinase RecT	NA
UHGV-0104741_72	eggNOG-mapper	1158602.I590_02957	RecT family	NA
UHGV-0104741_72	Pfam	PF03837	RecT family	RecT
UHGV-0104741_72	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0104741_72	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0104741_72	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0104741_73	Pfam	PF19808	NA	DUF6291
UHGV-0104741_73	Structural annotation	PF19808	NA	NA
UHGV-0104741_74	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0104741_74	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0104741_74	UniRef90	UniRef90_A0A2D5NHA5	Replicative DNA helicase	NA
UHGV-0104741_74	eggNOG-mapper	1122175.ATXU01000007_gene22	Participates in initiation and elongation during chromosome replication	NA
UHGV-0104741_74	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0104741_74	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0104741_74	COG	COG0305	Replicative DNA helicase	NA
UHGV-0104741_74	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0104741_75	PHROG	phrog_824	NA	unknown function
UHGV-0104741_75	UniRef90	UniRef90_UPI00189BCDD7	VRR-NUC domain-containing protein	NA
UHGV-0104741_75	eggNOG-mapper	768710.DesyoDRAFT_5233	VRR-NUC domain	NA
UHGV-0104741_75	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0104741_77	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0104741_77	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0104741_77	UniRef90	UniRef90_A0A1Q6Q4S4	Single-stranded DNA-binding protein	NA
UHGV-0104741_77	eggNOG-mapper	1042163.BRLA_c031440	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0104741_77	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0104741_77	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0104741_77	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0104741_77	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0104741_77	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0104741_78	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0104741_78	UniRef90	UniRef90_A0A1G8EL36	Site-specific DNA-methyltransferase (Adenine-specific)	NA
UHGV-0104741_78	eggNOG-mapper	411468.CLOSCI_00567	DNA N-6-adenine-methyltransferase	NA
UHGV-0104741_78	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0104741_78	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0104741_78	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0104741_79	UniRef90	UniRef90_UPI00054386A4	nucleotide pyrophosphohydrolase	NA
UHGV-0104741_79	eggNOG-mapper	272562.CA_C1930	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0104741_79	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0104741_79	Structural annotation	COG1694	NA	NA
UHGV-0104741_80	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0104741_80	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0104741_80	UniRef90	UniRef90_UPI00137AA373	DNA cytosine methyltransferase	NA
UHGV-0104741_80	eggNOG-mapper	573061.Clocel_3986	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0104741_80	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0104741_80	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0104741_80	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0104741_80	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0104741_80	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-0104741_84	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0104741_84	UniRef90	UniRef90_R6QWY1	28	NA
UHGV-0104741_84	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0104741_84	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0104741_86	PHROG	phrog_3136	NA	unknown function
UHGV-0104741_86	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0104741_86	eggNOG-mapper	1235792.C808_00630	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0104741_86	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0104741_86	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA