UHGV-0104829

Genome information

Genome length 36,984 bps

CDS count 52

Completeness 93.14% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104829
vOTU ID	vOTU-012664
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_245994
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.14% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.33
Jumbo phage	No

Genome content
Genome length	36,984 bps
GC content	43.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.56%
Average CDS length	668.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104829_1	PHROG	phrog_1066	NA	unknown function
UHGV-0104829_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0104829_2	UniRef90	UniRef90_R7FEF5	Terminase	NA
UHGV-0104829_2	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0104829_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0104829_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0104829_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0104829_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0104829_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0104829_3	UniRef90	UniRef90_R7FBP4	HK97 family phage portal protein	NA
UHGV-0104829_3	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0104829_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0104829_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0104829_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0104829_4	PHROG	phrog_18805	NA	unknown function
UHGV-0104829_4	UniRef90	UniRef90_R7FB75	Cell surface protein	NA
UHGV-0104829_4	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0104829_5	KOfam	K06904	NA	NA
UHGV-0104829_5	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0104829_5	UniRef90	UniRef90_R7F9U5	HK97 family phage prohead protease	NA
UHGV-0104829_5	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-0104829_5	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0104829_5	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0104829_5	COG	COG3740	Phage head maturation protease	NA
UHGV-0104829_5	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0104829_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0104829_6	UniRef90	UniRef90_R7FC89	Phage major capsid protein HK97 family	NA
UHGV-0104829_6	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0104829_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0104829_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0104829_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0104829_6	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0104829_7	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0104829_7	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0104829_7	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0104829_7	Structural annotation	PF18316, TIGR01560	NA	NA
UHGV-0104829_8	UniRef90	UniRef90_R7FBN9	Putative phage head-tail adaptor	NA
UHGV-0104829_8	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0104829_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0104829_9	Structural annotation	TIGR01725	NA	NA
UHGV-0104829_10	Structural annotation	PF05657	NA	NA
UHGV-0104829_11	PHROG	phrog_88	major tail protein	tail
UHGV-0104829_11	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0104829_11	eggNOG-mapper	1408303.JNJJ01000024_gene3001	phage major tail protein, phi13 family	NA
UHGV-0104829_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0104829_11	COG	COG5492	NA	NA
UHGV-0104829_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0104829_13	PHROG	phrog_23464	NA	unknown function
UHGV-0104829_13	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0104829_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0104829_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0104829_14	UniRef90	UniRef90_UPI001D088A46	phage tail family protein	NA
UHGV-0104829_14	eggNOG-mapper	665950.HMPREF1025_02008	Phage tail protein	NA
UHGV-0104829_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0104829_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0104829_14	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0104829_15	PHROG	phrog_538	minor tail protein	tail
UHGV-0104829_15	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0104829_15	eggNOG-mapper	411460.RUMTOR_01333	NA	NA
UHGV-0104829_15	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0104829_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0104829_16	PHROG	phrog_1220	head protein	head and packaging
UHGV-0104829_16	eggNOG-mapper	428125.CLOLEP_01425	COG NOG18825 non supervised orthologous group	NA
UHGV-0104829_16	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0104829_16	Pfam	PF13855	Leucine rich repeat	LRR_8
UHGV-0104829_16	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0104829_16	Structural annotation	PF03906, PF20747	NA	NA
UHGV-0104829_17	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0104829_17	PHROG	phrog_95	integrase	integration and excision
UHGV-0104829_17	UniRef90	UniRef90_UPI00189D067A	recombinase family protein	NA
UHGV-0104829_17	eggNOG-mapper	1123263.AUKY01000076_gene1782	Resolvase, N terminal domain	NA
UHGV-0104829_17	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0104829_17	Pfam	PF07508	Recombinase	Recombinase
UHGV-0104829_17	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0104829_17	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0104829_17	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0104829_18	PHROG	phrog_87	metallo-protease	other
UHGV-0104829_18	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0104829_18	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0104829_18	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0104829_18	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0104829_19	Pfam	PF08681	NA	DUF1778
UHGV-0104829_21	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0104829_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104829_21	UniRef90	UniRef90_R7GUT4	DNA-binding helix-turn-helix protein	NA
UHGV-0104829_21	eggNOG-mapper	203119.Cthe_2460	Helix-turn-helix XRE-family like proteins	NA
UHGV-0104829_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104829_21	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0104829_21	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0104829_22	eggNOG-mapper	1469948.JPNB01000002_gene3399	NA	NA
UHGV-0104829_22	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0104829_26	Structural annotation	PF09629, PF08962, MF_01354, NF007106, COG2139	NA	NA
UHGV-0104829_27	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104829_27	UniRef90	UniRef90_A0A1M5XSU1	NUMOD4 motif-containing protein	NA
UHGV-0104829_27	eggNOG-mapper	1416012.V5UQG0_9CAUD	HNH endonuclease	NA
UHGV-0104829_27	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0104829_27	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0104829_27	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0104829_28	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0104829_28	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0104829_28	UniRef90	UniRef90_A0A1M6S0P4	SNF2 family N-terminal domain-containing protein	NA
UHGV-0104829_28	eggNOG-mapper	1280692.AUJL01000009_gene2982	snf2 family	NA
UHGV-0104829_28	PADLOC	DpdE_00011	DpdE	DPD
UHGV-0104829_28	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0104829_28	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0104829_28	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0104829_28	Structural annotation	PF16203, MF_01821, NF038318, COG0553	NA	NA
UHGV-0104829_30	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104829_30	UniRef90	UniRef90_A0A415TAD1	VRR-NUC domain-containing protein	NA
UHGV-0104829_30	eggNOG-mapper	742740.HMPREF9474_02373	VRR_NUC	NA
UHGV-0104829_30	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0104829_30	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0104829_30	Structural annotation	PF01870, MF_01490, NF002581, COG1591	NA	NA
UHGV-0104829_31	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0104829_31	UniRef90	UniRef90_A0A1C6EY57	Siphovirus Gp157	NA
UHGV-0104829_31	eggNOG-mapper	97138.C820_00779	Siphovirus Gp157	NA
UHGV-0104829_31	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0104829_31	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0104829_33	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0104829_33	UniRef90	UniRef90_UPI0007C86507	AAA family ATPase	NA
UHGV-0104829_33	eggNOG-mapper	669262.COK_1592	NA	NA
UHGV-0104829_33	Pfam	PF13479	AAA domain	AAA_24
UHGV-0104829_36	PHROG	phrog_7778	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0104829_36	UniRef90	UniRef90_UPI001C389F24	NA	NA
UHGV-0104829_36	eggNOG-mapper	445335.CBN_1358	NA	NA
UHGV-0104829_36	Pfam	PF05037	NA	DUF669
UHGV-0104829_36	Structural annotation	PF05037	NA	NA
UHGV-0104829_37	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0104829_37	UniRef90	UniRef90_A0A2V2F8D8	Adenine methyltransferase	NA
UHGV-0104829_37	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0104829_37	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0104829_37	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0104829_37	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0104829_38	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0104829_38	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0104829_38	UniRef90	UniRef90_UPI0004070520	DNA polymerase	NA
UHGV-0104829_38	eggNOG-mapper	1280692.AUJL01000009_gene2997	DNA polymerase elongation subunit (Family B)	NA
UHGV-0104829_38	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0104829_38	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0104829_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0104829_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104829_39	UniRef90	UniRef90_A0A0S2W086	Transcriptional regulator, XRE family	NA
UHGV-0104829_39	eggNOG-mapper	431943.CKL_1849	Helix-turn-helix XRE-family like proteins	NA
UHGV-0104829_39	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0104829_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104829_39	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0104829_40	PHROG	phrog_236	nucleotide kinase	other
UHGV-0104829_40	UniRef90	UniRef90_D7GQK6	NA	NA
UHGV-0104829_40	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-0104829_40	Pfam	PF11753	NA	DUF3310
UHGV-0104829_40	Structural annotation	PF11753	NA	NA
UHGV-0104829_41	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0104829_41	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0104829_41	UniRef90	UniRef90_UPI0015932438	site-specific DNA-methyltransferase	NA
UHGV-0104829_41	eggNOG-mapper	1120933.ATUY01000002_gene202	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0104829_41	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0104829_41	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0104829_41	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0104829_41	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0104829_43	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0104829_43	UniRef90	UniRef90_D7GNT7	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0104829_43	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0104829_43	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0104829_43	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0104829_43	Structural annotation	PF01503, MF_01020, NF001613, COG1694	NA	NA
UHGV-0104829_44	PHROG	phrog_6721	NA	unknown function
UHGV-0104829_44	eggNOG-mapper	537007.BLAHAN_05521	NA	NA
UHGV-0104829_44	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0104829_45	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0104829_45	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0104829_45	UniRef90	UniRef90_A0A259V1C2	SF3 helicase domain-containing protein	NA
UHGV-0104829_45	eggNOG-mapper	742740.HMPREF9474_02364	Phage plasmid primase, P4 family	NA
UHGV-0104829_45	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0104829_45	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0104829_45	Pfam	PF19263	NA	DUF5906
UHGV-0104829_45	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0104829_45	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0104829_45	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0104829_45	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0104829_46	UniRef90	UniRef90_A0A843H1D7	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0104829_46	eggNOG-mapper	1321779.HMPREF1984_01313	NA	NA
UHGV-0104829_46	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0104829_46	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0104829_47	PHROG	phrog_1863	NA	unknown function
UHGV-0104829_47	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0104829_48	PHROG	phrog_13256	NA	unknown function
UHGV-0104829_48	eggNOG-mapper	1226322.HMPREF1545_02800	NA	NA
UHGV-0104829_49	KOfam	K07273	acm; lysozyme	NA
UHGV-0104829_49	PHROG	phrog_291	endolysin	lysis
UHGV-0104829_49	UniRef90	UniRef90_R7FBP9	Glycosyl hydrolase family 25	NA
UHGV-0104829_49	eggNOG-mapper	641112.ACOK01000108_gene1814	hydrolase, family 25	NA
UHGV-0104829_49	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0104829_49	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0104829_49	Structural annotation	PF01183, MF_00152, NF008522, COG3757	NA	NA
UHGV-0104829_50	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0104829_50	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0104829_50	UniRef90	UniRef90_UPI001D08E9BA	terminase small subunit	NA
UHGV-0104829_50	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0104829_50	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0104829_50	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0104829_50	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0104829_52	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0104829_52	UniRef90	UniRef90_R7F9V0	HNH domain-containing protein	NA
UHGV-0104829_52	eggNOG-mapper	1123288.SOV_2c03680	adenylate kinase activity	NA
UHGV-0104829_52	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0104829_52	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0104829_52	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA