UHGV-0104841

Genome information

Genome length 49,437 bps

CDS count 84

Completeness 100.00% (complete)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104841
vOTU ID	vOTU-045494
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253525
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.91
Jumbo phage	No

Genome content
Genome length	49,437 bps
GC content	48.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	84
CDS density	89.10%
Average CDS length	528.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104841_1	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0104841_2	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0104841_3	PHROG	phrog_16490	NA	unknown function
UHGV-0104841_3	eggNOG-mapper	445972.ANACOL_01880	NA	NA
UHGV-0104841_5	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0104841_6	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-0104841_6	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0104841_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0104841_7	PHROG	phrog_18955	NA	unknown function
UHGV-0104841_7	UniRef90	UniRef90_A0A810Q4Z7	SLH domain-containing protein	NA
UHGV-0104841_7	eggNOG-mapper	1226322.HMPREF1545_00782	NA	NA
UHGV-0104841_7	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0104841_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0104841_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0104841_7	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0104841_9	eggNOG-mapper	445972.ANACOL_03381	NA	NA
UHGV-0104841_12	PHROG	phrog_5302	tail protein	tail
UHGV-0104841_12	UniRef90	UniRef90_R6M197	Ig-like_bact domain-containing protein	NA
UHGV-0104841_12	eggNOG-mapper	1203606.HMPREF1526_00261	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0104841_12	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0104841_13	PHROG	phrog_2310	NA	unknown function
UHGV-0104841_16	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0104841_17	PHROG	phrog_10898	NA	unknown function
UHGV-0104841_17	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0104841_17	eggNOG-mapper	1347368.HG964403_gene4490	S-layer homology domain	NA
UHGV-0104841_17	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0104841_17	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0104841_19	PHROG	phrog_19695	NA	unknown function
UHGV-0104841_19	eggNOG-mapper	476272.RUMHYD_01995	NA	NA
UHGV-0104841_22	PHROG	phrog_32744	NA	unknown function
UHGV-0104841_22	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0104841_22	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0104841_23	PHROG	phrog_1194	NA	unknown function
UHGV-0104841_23	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0104841_23	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0104841_24	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0104841_24	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0104841_24	COG	COG1511	NA	NA
UHGV-0104841_24	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0104841_25	PHROG	phrog_13333	NA	unknown function
UHGV-0104841_25	UniRef90	UniRef90_UPI001D05CE4F	OB-fold putative lipoprotein	NA
UHGV-0104841_25	eggNOG-mapper	394503.Ccel_3023	tRNA_anti-like	NA
UHGV-0104841_25	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0104841_27	PHROG	phrog_33872	NA	unknown function
UHGV-0104841_27	eggNOG-mapper	445972.ANACOL_00292	NA	NA
UHGV-0104841_28	PHROG	phrog_706	NA	unknown function
UHGV-0104841_28	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-0104841_28	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0104841_28	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0104841_28	Structural annotation	PF06854	NA	NA
UHGV-0104841_29	PHROG	phrog_11299	NA	unknown function
UHGV-0104841_29	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0104841_29	Structural annotation	PF10666	NA	NA
UHGV-0104841_30	PHROG	phrog_3099	NA	unknown function
UHGV-0104841_30	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0104841_30	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0104841_31	PHROG	phrog_3266	tail completion	connector
UHGV-0104841_31	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0104841_31	Structural annotation	PF12691	NA	NA
UHGV-0104841_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0104841_32	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0104841_32	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0104841_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0104841_32	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0104841_33	PHROG	phrog_3366	NA	unknown function
UHGV-0104841_33	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0104841_33	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0104841_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0104841_34	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0104841_35	PHROG	phrog_29	major head protein	head and packaging
UHGV-0104841_35	UniRef90	UniRef90_UPI0004AE1FFD	major capsid protein	NA
UHGV-0104841_35	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0104841_35	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0104841_35	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0104841_36	PHROG	phrog_909	major head protein	head and packaging
UHGV-0104841_36	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0104841_36	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0104841_36	Structural annotation	PF02924	NA	NA
UHGV-0104841_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0104841_37	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0104841_37	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0104841_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0104841_37	Structural annotation	PF06810	NA	NA
UHGV-0104841_38	Structural annotation	PF11607, MF_00436, NF011232, COG1923	NA	NA
UHGV-0104841_39	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0104841_39	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0104841_39	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0104841_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0104841_39	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0104841_39	COG	COG2369	NA	NA
UHGV-0104841_39	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0104841_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0104841_40	UniRef90	UniRef90_UPI00189D71DB	phage capsid protein	NA
UHGV-0104841_40	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-0104841_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0104841_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104841_41	PHROG	phrog_10250	NA	unknown function
UHGV-0104841_41	UniRef90	UniRef90_UPI0018AC3323	PBSX family phage terminase large subunit	NA
UHGV-0104841_41	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0104841_41	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0104841_41	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0104841_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0104841_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104841_41	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0104841_42	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-0104841_42	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0104841_42	Structural annotation	PF13542	NA	NA
UHGV-0104841_43	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0104841_43	UniRef90	UniRef90_A0A1V0QCE9	Bro-N domain-containing protein	NA
UHGV-0104841_43	eggNOG-mapper	411467.BACCAP_02726	BRO family, N-terminal domain	NA
UHGV-0104841_43	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0104841_43	COG	COG3617	Prophage antirepressor	NA
UHGV-0104841_43	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0104841_44	PHROG	phrog_7395	NA	unknown function
UHGV-0104841_44	UniRef90	UniRef90_UPI0009F594E1	NA	NA
UHGV-0104841_44	eggNOG-mapper	886882.PPSC2_c2958	NA	NA
UHGV-0104841_44	Pfam	PF14015	NA	DUF4231
UHGV-0104841_44	NCBIFam	NF033634.1	SLATT domain-containing protein	NA
UHGV-0104841_44	Structural annotation	PF14015, NF033634	NA	NA
UHGV-0104841_45	PHROG	phrog_419	NA	unknown function
UHGV-0104841_45	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-0104841_45	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0104841_45	Pfam	PF14083	PGDYG protein	PGDYG
UHGV-0104841_45	Structural annotation	PF14083	NA	NA
UHGV-0104841_46	PHROG	phrog_6988	NA	unknown function
UHGV-0104841_46	UniRef90	UniRef90_A0A417IT73	Nuclease	NA
UHGV-0104841_46	eggNOG-mapper	203119.Cthe_2456	NA	NA
UHGV-0104841_46	PADLOC	ThsB1_00002	TIR-like	Thoeris
UHGV-0104841_46	Pfam	PF08937	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
UHGV-0104841_46	Structural annotation	PF08937, MF_03036, TIGR03646, COG0758	NA	NA
UHGV-0104841_47	UniRef90	UniRef90_A0A8J6J3G6	Helix-turn-helix transcriptional regulator	NA
UHGV-0104841_47	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0104841_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104841_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104841_49	PHROG	phrog_924	NA	unknown function
UHGV-0104841_49	UniRef90	UniRef90_A0A810Q569	NA	NA
UHGV-0104841_49	Pfam	PF04448	NA	DUF551
UHGV-0104841_49	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0104841_51	PHROG	phrog_8684	NA	unknown function
UHGV-0104841_51	UniRef90	UniRef90_UPI001D00D0A2	YopX family protein	NA
UHGV-0104841_51	eggNOG-mapper	1300150.EMQU_2285	YopX protein	NA
UHGV-0104841_51	Pfam	PF09643	YopX protein	YopX
UHGV-0104841_51	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0104841_52	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0104841_52	UniRef90	UniRef90_A0A810QB82	NA	NA
UHGV-0104841_52	eggNOG-mapper	1100790.H2ELW3_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0104841_52	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0104841_52	Structural annotation	PF18909	NA	NA
UHGV-0104841_55	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0104841_55	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0104841_55	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0104841_55	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0104841_55	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0104841_58	PHROG	phrog_25732	NA	unknown function
UHGV-0104841_59	PHROG	phrog_10714	NA	unknown function
UHGV-0104841_59	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0104841_59	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0104841_61	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0104841_61	UniRef90	UniRef90_UPI001D034588	Lar family restriction alleviation protein	NA
UHGV-0104841_61	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0104841_61	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0104841_61	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0104841_63	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0104841_63	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0104841_63	UniRef90	UniRef90_A0A1C5W9J7	DNA repair protein RadA	NA
UHGV-0104841_63	eggNOG-mapper	397290.C810_01519	NA	NA
UHGV-0104841_63	Pfam	PF13481	AAA domain	AAA_25
UHGV-0104841_63	COG	COG0305	Replicative DNA helicase	NA
UHGV-0104841_63	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0104841_64	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0104841_64	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0104841_64	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0104841_66	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0104841_66	UniRef90	UniRef90_A0A1C5W9A3	ERCC4 domain-containing protein	NA
UHGV-0104841_66	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0104841_66	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0104841_66	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0104841_66	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0104841_67	PHROG	phrog_18107	NA	unknown function
UHGV-0104841_67	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0104841_67	Structural annotation	PF05037	NA	NA
UHGV-0104841_69	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0104841_69	UniRef90	UniRef90_A0A8J6M3C9	AAA family ATPase	NA
UHGV-0104841_69	eggNOG-mapper	903814.ELI_1273	AAA domain	NA
UHGV-0104841_69	Pfam	PF13479	AAA domain	AAA_24
UHGV-0104841_69	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0104841_71	PHROG	phrog_25245	NA	unknown function
UHGV-0104841_71	UniRef90	UniRef90_A0A810Q5U9	3D domain-containing protein	NA
UHGV-0104841_71	eggNOG-mapper	1226322.HMPREF1545_00012	3D domain	NA
UHGV-0104841_71	Pfam	PF06725	3D domain	3D
UHGV-0104841_71	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0104841_71	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0104841_76	Structural annotation	PF20385, NF040556	NA	NA
UHGV-0104841_77	PHROG	phrog_750	NA	unknown function
UHGV-0104841_77	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0104841_77	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0104841_79	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0104841_79	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0104841_79	eggNOG-mapper	479434.Sthe_2230	sequence-specific DNA binding	NA
UHGV-0104841_79	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0104841_79	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0104841_79	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0104841_81	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0104841_81	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0104841_81	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0104841_83	UniRef90	UniRef90_UPI001C0BFF51	LITAF-like zinc ribbon domain-containing protein	NA
UHGV-0104841_83	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0104841_84	KOfam	K14059	int; integrase	NA
UHGV-0104841_84	PHROG	phrog_1	integrase	integration and excision
UHGV-0104841_84	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0104841_84	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0104841_84	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104841_84	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0104841_84	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA