UHGV-0104883

Genome information

Genome length 37,343 bps

CDS count 57

Completeness 97.92% (high-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104883
vOTU ID	vOTU-076022
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_248968
BioSample	SAMEA3708763
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.94
Jumbo phage	No

Genome content
Genome length	37,343 bps
GC content	46.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	86.94%
Average CDS length	572.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104883_1	KOfam	K20974	K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]	NA
UHGV-0104883_1	PHROG	phrog_20458	NA	unknown function
UHGV-0104883_1	UniRef90	UniRef90_A0A350TZJ0	Stage 0 sporulation protein A homolog (Fragment)	NA
UHGV-0104883_1	eggNOG-mapper	457412.RSAG_00853	His Kinase A (phosphoacceptor) domain	NA
UHGV-0104883_1	Pfam	PF00512	His Kinase A (phospho-acceptor) domain	HisKA
UHGV-0104883_1	Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
UHGV-0104883_1	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0104883_1	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0104883_3	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0104883_3	UniRef90	UniRef90_A0A350TXK3	ORF6N domain-containing protein	NA
UHGV-0104883_3	eggNOG-mapper	658655.HMPREF0988_00907	ORF6N domain	NA
UHGV-0104883_3	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0104883_3	Structural annotation	PF10543, PF15188, MF_01506, TIGR02681, COG3646	NA	NA
UHGV-0104883_5	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0104883_5	UniRef90	UniRef90_UPI000E47F582	helix-turn-helix domain-containing protein	NA
UHGV-0104883_5	eggNOG-mapper	1196322.A370_04524	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0104883_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0104883_5	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-0104883_6	PHROG	phrog_13890	NA	unknown function
UHGV-0104883_6	eggNOG-mapper	1232453.BAIF02000002_gene1276	NA	NA
UHGV-0104883_6	Structural annotation	PF10723, NF010256, COG4877	NA	NA
UHGV-0104883_7	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0104883_7	PHROG	phrog_12727	endolysin	lysis
UHGV-0104883_7	UniRef90	UniRef90_A0A396P8X6	LYZ2 domain-containing protein	NA
UHGV-0104883_7	eggNOG-mapper	1341157.RF007C_12385	mannosyl-glycoprotein	NA
UHGV-0104883_7	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0104883_7	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0104883_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0104883_8	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0104883_8	UniRef90	UniRef90_UPI001C3C1005	Phage antirepressor KilAC domain-containing protein	NA
UHGV-0104883_8	eggNOG-mapper	568816.Acin_1403	Phage antirepressor protein KilAC domain	NA
UHGV-0104883_8	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0104883_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0104883_8	COG	COG3617	Prophage antirepressor	NA
UHGV-0104883_8	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-0104883_9	PHROG	phrog_13890	NA	unknown function
UHGV-0104883_9	UniRef90	UniRef90_A0A3A8Z2N2	ABC transporter ATP-binding protein	NA
UHGV-0104883_9	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-0104883_10	PHROG	phrog_13256	NA	unknown function
UHGV-0104883_10	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0104883_12	PHROG	phrog_937	hemolysin	other
UHGV-0104883_12	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0104883_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0104883_13	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-0104883_13	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-0104883_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0104883_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0104883_13	COG	COG4926	Phage-related protein	NA
UHGV-0104883_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0104883_14	PHROG	phrog_2310	NA	unknown function
UHGV-0104883_14	eggNOG-mapper	1391647.AVSV01000022_gene2576	NA	NA
UHGV-0104883_16	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0104883_16	UniRef90	UniRef90_A0A136WFR9	BppU_N domain-containing protein	NA
UHGV-0104883_16	eggNOG-mapper	1232449.BAHV02000010_gene2732	NA	NA
UHGV-0104883_16	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0104883_16	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0104883_16	Structural annotation	PF10651, PF21722, NF032891, COG2372	NA	NA
UHGV-0104883_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0104883_17	UniRef90	UniRef90_A0A350TW29	Phage tail protein	NA
UHGV-0104883_17	eggNOG-mapper	545697.HMPREF0216_00910	tail component	NA
UHGV-0104883_17	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0104883_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0104883_17	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0104883_18	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0104883_18	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0104883_18	UniRef90	UniRef90_A0A350TW28	Phage tail tape measure protein	NA
UHGV-0104883_18	eggNOG-mapper	742740.HMPREF9474_01203	Phage tail tape measure protein, TP901 family	NA
UHGV-0104883_18	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0104883_18	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0104883_18	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0104883_18	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0104883_19	eggNOG-mapper	1121423.JONT01000041_gene954	NA	NA
UHGV-0104883_20	eggNOG-mapper	1280689.AUJC01000007_gene3310	NA	NA
UHGV-0104883_20	Structural annotation	PF17388	NA	NA
UHGV-0104883_21	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0104883_21	eggNOG-mapper	755731.Clo1100_0552	NA	NA
UHGV-0104883_21	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0104883_22	PHROG	phrog_78	tail terminator	connector
UHGV-0104883_22	UniRef90	UniRef90_E7GJW4	Prophage pi2 protein 38	NA
UHGV-0104883_22	eggNOG-mapper	476272.RUMHYD_01476	COG NOG18352 non supervised orthologous group	NA
UHGV-0104883_22	Structural annotation	PF20765	NA	NA
UHGV-0104883_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0104883_23	UniRef90	UniRef90_A0A7V7BBM4	HK97 gp10 family phage protein	NA
UHGV-0104883_23	eggNOG-mapper	1121871.AUAT01000030_gene1030	NA	NA
UHGV-0104883_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0104883_23	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0104883_24	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0104883_24	UniRef90	UniRef90_UPI001B3C8C78	phage head closure protein	NA
UHGV-0104883_24	eggNOG-mapper	1033738.CAEP01000018_gene3675	head-tail adaptor	NA
UHGV-0104883_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0104883_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0104883_25	PHROG	phrog_5223	neck protein	connector
UHGV-0104883_25	UniRef90	UniRef90_B6W9Y5	Putative phage DNA packaging protein	NA
UHGV-0104883_25	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-0104883_25	Structural annotation	TIGR01560	NA	NA
UHGV-0104883_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0104883_26	UniRef90	UniRef90_A0A350TW17	Phage major capsid protein (Fragment)	NA
UHGV-0104883_26	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0104883_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0104883_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0104883_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0104883_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0104883_27	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0104883_27	UniRef90	UniRef90_A0A350TW16	Peptidase (Fragment)	NA
UHGV-0104883_27	eggNOG-mapper	1033738.CAEP01000167_gene3589	Serine dehydrogenase proteinase	NA
UHGV-0104883_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0104883_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0104883_27	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0104883_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0104883_28	UniRef90	UniRef90_A0A1T4XJH4	Phage portal protein, HK97 family	NA
UHGV-0104883_28	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0104883_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0104883_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0104883_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0104883_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0104883_29	UniRef90	UniRef90_A0A350U004	Terminase large subunit	NA
UHGV-0104883_29	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-0104883_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0104883_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0104883_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0104883_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0104883_30	PHROG	phrog_1066	NA	unknown function
UHGV-0104883_30	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0104883_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0104883_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104883_31	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-0104883_31	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0104883_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0104883_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0104883_34	UniRef90	UniRef90_A0A350U007	DNA-binding protein	NA
UHGV-0104883_34	eggNOG-mapper	1280673.AUJJ01000020_gene1343	Nucleotidyltransferase domain	NA
UHGV-0104883_34	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0104883_34	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0104883_34	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0104883_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0104883_35	UniRef90	UniRef90_A0A415FLQ4	NA	NA
UHGV-0104883_35	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-0104883_35	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0104883_35	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0104883_36	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0104883_36	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-0104883_36	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0104883_37	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0104883_37	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0104883_37	UniRef90	UniRef90_R5AC34	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0104883_37	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0104883_37	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0104883_37	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0104883_37	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0104883_37	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0104883_40	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0104883_40	UniRef90	UniRef90_A0A847VZF6	NA	NA
UHGV-0104883_40	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0104883_40	Pfam	PF06048	NA	DUF927
UHGV-0104883_40	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0104883_40	COG	COG5519	NA	NA
UHGV-0104883_40	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0104883_41	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0104883_41	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-0104883_41	eggNOG-mapper	861454.HMPREF9099_00350	ERCC4 domain	NA
UHGV-0104883_41	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0104883_41	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0104883_42	PHROG	phrog_18107	NA	unknown function
UHGV-0104883_42	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0104883_42	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0104883_42	Structural annotation	PF05037	NA	NA
UHGV-0104883_43	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0104883_43	UniRef90	UniRef90_A0A8J6M3C9	AAA family ATPase	NA
UHGV-0104883_43	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0104883_43	Pfam	PF13479	AAA domain	AAA_24
UHGV-0104883_43	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0104883_48	UniRef90	UniRef90_A0A416KCJ3	DNA-binding protein	NA
UHGV-0104883_48	eggNOG-mapper	246199.CUS_5199	Helix-turn-helix domain	NA
UHGV-0104883_48	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0104883_48	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0104883_49	PHROG	phrog_5079	NA	unknown function
UHGV-0104883_49	eggNOG-mapper	1204534.J9QDX8_9CAUD	NA	NA
UHGV-0104883_50	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0104883_51	KOfam	K03627	MBF1; putative transcription factor	NA
UHGV-0104883_51	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0104883_51	UniRef90	UniRef90_A0A350TVK0	XRE family transcriptional regulator	NA
UHGV-0104883_51	eggNOG-mapper	936375.HMPREF1152_1045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0104883_51	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0104883_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104883_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104883_51	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0104883_52	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0104883_52	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0104883_52	UniRef90	UniRef90_A0A350TVK1	XRE family transcriptional regulator	NA
UHGV-0104883_52	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0104883_52	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0104883_52	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0104883_52	NCBIFam	TIGR00498.1	transcriptional repressor LexA	NA
UHGV-0104883_52	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0104883_52	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0104883_53	eggNOG-mapper	1235802.C823_04880	NA	NA
UHGV-0104883_54	PHROG	phrog_7395	NA	unknown function
UHGV-0104883_54	UniRef90	UniRef90_A0A352UQ77	NA	NA
UHGV-0104883_54	eggNOG-mapper	596319.STAWA0001_0614	NA	NA
UHGV-0104883_54	Pfam	PF14015	NA	DUF4231
UHGV-0104883_54	NCBIFam	NF033634.1	SLATT domain-containing protein	NA
UHGV-0104883_54	Structural annotation	PF14015, NF033634	NA	NA
UHGV-0104883_55	PHROG	phrog_419	NA	unknown function
UHGV-0104883_55	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-0104883_55	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0104883_56	PHROG	phrog_6988	NA	unknown function
UHGV-0104883_56	UniRef90	UniRef90_A0A352UQ75	Nuclease	NA
UHGV-0104883_56	eggNOG-mapper	203119.Cthe_2456	NA	NA
UHGV-0104883_56	PADLOC	ThsB1_00002	TIR-like	Thoeris
UHGV-0104883_56	Pfam	PF08937	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
UHGV-0104883_56	Structural annotation	PF08937, MF_03036, TIGR03646, COG0758	NA	NA
UHGV-0104883_57	KOfam	K14059	int; integrase	NA
UHGV-0104883_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0104883_57	UniRef90	UniRef90_A0A352UQ74	Site-specific integrase	NA
UHGV-0104883_57	eggNOG-mapper	1120998.AUFC01000030_gene2201	Belongs to the 'phage' integrase family	NA
UHGV-0104883_57	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0104883_57	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0104883_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104883_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0104883_57	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA