UHGV-0104909

Genome information

Genome length 50,422 bps

CDS count 93

Completeness 100.00% (complete)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104909
vOTU ID	vOTU-045500
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_248466
BioSample	SAMEA3708888
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.5
Jumbo phage	No

Genome content
Genome length	50,422 bps
GC content	33.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	93
CDS density	91.91%
Average CDS length	501.94 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104909_1	eggNOG-mapper	742723.HMPREF9477_00897	phage tail tape measure protein	NA
UHGV-0104909_1	COG	COG4487	NA	NA
UHGV-0104909_2	PHROG	phrog_36410	NA	unknown function
UHGV-0104909_2	eggNOG-mapper	706433.HMPREF9430_01256	Phage tail protein	NA
UHGV-0104909_2	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0104909_3	PHROG	phrog_538	minor tail protein	tail
UHGV-0104909_3	UniRef90	UniRef90_A0A843GTT7	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0104909_3	eggNOG-mapper	573061.Clocel_2427	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0104909_3	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0104909_4	PHROG	phrog_1220	head protein	head and packaging
UHGV-0104909_4	eggNOG-mapper	755731.Clo1100_0558	COG NOG18825 non supervised orthologous group	NA
UHGV-0104909_4	Structural annotation	PF20747	NA	NA
UHGV-0104909_5	eggNOG-mapper	1688.BCUN_1858	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0104909_5	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0104909_5	Structural annotation	PF09479, PF00703, NF033188	NA	NA
UHGV-0104909_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0104909_8	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0104909_8	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0104909_8	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-0104909_11	PHROG	phrog_16490	NA	unknown function
UHGV-0104909_11	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0104909_12	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0104909_13	Structural annotation	PF00210, NF007638, COG1528	NA	NA
UHGV-0104909_14	PHROG	phrog_15863	NA	unknown function
UHGV-0104909_14	UniRef90	UniRef90_A0A417CWJ3	J domain-containing protein	NA
UHGV-0104909_14	eggNOG-mapper	397288.C806_01234	DnaJ molecular chaperone homology domain	NA
UHGV-0104909_14	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0104909_19	Structural annotation	PF06003, MF_01077, NF037951, COG1862	NA	NA
UHGV-0104909_21	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0104909_21	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0104909_21	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0104909_21	eggNOG-mapper	931626.Awo_c24320	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0104909_21	PADLOC	drt-UG29	DRT	DRT
UHGV-0104909_21	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0104909_21	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0104909_21	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0104909_21	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0104909_23	Structural annotation	PF08804	NA	NA
UHGV-0104909_25	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0104909_25	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0104909_25	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-0104909_25	eggNOG-mapper	1123371.ATXH01000024_gene1024	Bacterial DNA polymerase III alpha subunit	NA
UHGV-0104909_25	Pfam	PF02811	PHP domain	PHP
UHGV-0104909_25	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0104909_25	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0104909_25	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0104909_25	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0104909_25	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0104909_25	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0104909_26	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0104909_26	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0104909_26	UniRef90	UniRef90_UPI001BCFCE00	recombinase RecA	NA
UHGV-0104909_26	eggNOG-mapper	469616.FMAG_02276	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0104909_26	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0104909_26	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0104909_26	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0104909_27	Structural annotation	PF01775, MF_00273, NF010188, COG2157	NA	NA
UHGV-0104909_28	PHROG	phrog_2506	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104909_28	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0104909_30	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0104909_30	UniRef90	UniRef90_A0A2N5H4R9	Sugar-phospahte nucleotidyltransferase	NA
UHGV-0104909_30	eggNOG-mapper	1235797.C816_04032	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0104909_30	Pfam	PF13651	Adenine-specific methyltransferase EcoRI	EcoRI_methylase
UHGV-0104909_30	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0104909_30	Structural annotation	PF13651, MF_00607, NF000077, COG0286	NA	NA
UHGV-0104909_32	Structural annotation	PF18358	NA	NA
UHGV-0104909_33	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0104909_33	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0104909_40	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0104909_40	UniRef90	UniRef90_A0A374ABN1	DNA_ligase_aden domain-containing protein	NA
UHGV-0104909_40	eggNOG-mapper	691965.D4P7L3_9CAUD	helicase activity	NA
UHGV-0104909_47	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0104909_47	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0104909_48	Structural annotation	PF21138, NF009630, COG2375	NA	NA
UHGV-0104909_51	Structural annotation	PF10922	NA	NA
UHGV-0104909_52	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0104909_52	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0104909_52	UniRef90	UniRef90_A0A316NBU0	Ribonuclease H	NA
UHGV-0104909_52	eggNOG-mapper	632518.Calow_1132	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0104909_52	Pfam	PF00075	RNase H	RNase_H
UHGV-0104909_52	COG	COG0328	Ribonuclease HI	NA
UHGV-0104909_52	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0104909_53	Structural annotation	PF14084	NA	NA
UHGV-0104909_56	PHROG	phrog_2412	NA	unknown function
UHGV-0104909_56	UniRef90	UniRef90_UPI0012B5FF1C	stress-induced protein	NA
UHGV-0104909_57	PHROG	phrog_26445	NA	unknown function
UHGV-0104909_57	eggNOG-mapper	97139.C824_00034	NA	NA
UHGV-0104909_58	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0104909_58	eggNOG-mapper	665950.HMPREF1025_01374	NA	NA
UHGV-0104909_60	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0104909_60	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0104909_60	UniRef90	UniRef90_A0A4D6A7C4	DNA modification methylase	NA
UHGV-0104909_60	eggNOG-mapper	1476902.A0A067ZI74_9CAUD	N-methyltransferase activity	NA
UHGV-0104909_60	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0104909_60	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0104909_60	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0104909_61	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0104909_61	eggNOG-mapper	1236514.BAKL01000015_gene1638	NA	NA
UHGV-0104909_61	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0104909_61	Structural annotation	PF20691, MF_00057, NF038299, COG1216	NA	NA
UHGV-0104909_65	Structural annotation	PF01649	NA	NA
UHGV-0104909_67	PHROG	phrog_22292	NA	unknown function
UHGV-0104909_72	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104909_72	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0104909_72	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-0104909_72	eggNOG-mapper	1443122.Z958_p0035	Phage terminase, large subunit, PBSX family	NA
UHGV-0104909_72	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0104909_72	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0104909_72	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0104909_72	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104909_72	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0104909_75	PHROG	phrog_1009	NA	unknown function
UHGV-0104909_76	PHROG	phrog_443	holin	lysis
UHGV-0104909_76	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0104909_76	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0104909_76	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0104909_76	Structural annotation	PF16945	NA	NA
UHGV-0104909_77	PHROG	phrog_21357	endolysin	lysis
UHGV-0104909_77	UniRef90	UniRef90_D4MVQ6	CHAP domain	NA
UHGV-0104909_77	eggNOG-mapper	693746.OBV_19030	CHAP domain	NA
UHGV-0104909_77	Pfam	PF05257	CHAP domain	CHAP
UHGV-0104909_77	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0104909_77	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0104909_77	Structural annotation	PF01471, PF00877, TIGR02594, TIGR03979, COG3942	NA	NA
UHGV-0104909_78	PHROG	phrog_64	portal protein	head and packaging
UHGV-0104909_78	UniRef90	UniRef90_A0A843JBG3	Phage portal protein	NA
UHGV-0104909_78	eggNOG-mapper	1567015.A0A0A7RUQ6_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0104909_78	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0104909_78	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0104909_80	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0104909_80	UniRef90	UniRef90_A0A1G9U003	Phage Mu protein F like protein	NA
UHGV-0104909_80	eggNOG-mapper	748727.CLJU_c31360	Portal protein	NA
UHGV-0104909_80	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0104909_83	Structural annotation	MF_02110	NA	NA
UHGV-0104909_84	PHROG	phrog_909	major head protein	head and packaging
UHGV-0104909_84	UniRef90	UniRef90_A0A512PLH0	Putative structural protein-phage associated	NA
UHGV-0104909_84	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-0104909_84	Structural annotation	PF02924	NA	NA
UHGV-0104909_85	PHROG	phrog_29	major head protein	head and packaging
UHGV-0104909_85	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0104909_85	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0104909_85	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0104909_85	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0104909_86	Structural annotation	PF07498	NA	NA
UHGV-0104909_87	PHROG	phrog_4020	NA	unknown function
UHGV-0104909_87	eggNOG-mapper	445335.CBN_3083	NA	NA
UHGV-0104909_88	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0104909_89	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-0104909_89	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0104909_90	PHROG	phrog_7585	NA	unknown function
UHGV-0104909_90	eggNOG-mapper	1121342.AUCO01000012_gene1689	NA	NA
UHGV-0104909_90	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0104909_91	PHROG	phrog_6686	tail tube protein	tail
UHGV-0104909_91	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0104909_91	eggNOG-mapper	1121342.AUCO01000012_gene1688	NA	NA
UHGV-0104909_91	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0104909_92	PHROG	phrog_6280	NA	unknown function
UHGV-0104909_92	UniRef90	UniRef90_A0A8J6PH67	Esterase	NA
UHGV-0104909_92	eggNOG-mapper	332101.JIBU02000023_gene4728	NA	NA
UHGV-0104909_93	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0104909_93	UniRef90	UniRef90_A0A7U9JT69	Phage tail tape measure protein, TP901 family	NA
UHGV-0104909_93	eggNOG-mapper	1304866.K413DRAFT_1234	tail tape measure protein	NA
UHGV-0104909_93	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0104909_93	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0104909_93	COG	COG5283	Phage-related tail protein	NA