UHGV-0104964

Genome information

Genome length 39,445 bps

CDS count 65

Completeness 96.76% (high-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104964
vOTU ID	vOTU-014732
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_257353
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.76% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.11
Jumbo phage	No

Genome content
Genome length	39,445 bps
GC content	51.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.78%
Average CDS length	555.65 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104964_1	KOfam	K14059	int; integrase	NA
UHGV-0104964_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0104964_1	UniRef90	UniRef90_A0A1Y4T0F9	Tyr recombinase domain-containing protein	NA
UHGV-0104964_1	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0104964_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104964_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0104964_1	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0104964_2	eggNOG-mapper	500635.MITSMUL_05163	NA	NA
UHGV-0104964_4	Structural annotation	PF10007, MF_01819, TIGR03433, COG1733	NA	NA
UHGV-0104964_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104964_5	UniRef90	UniRef90_A0A0X1U6V7	HTH cro/C1-type domain-containing protein	NA
UHGV-0104964_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104964_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104964_5	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0104964_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104964_6	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0104964_6	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0104964_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104964_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0104964_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0104964_8	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104964_8	UniRef90	UniRef90_A0A8F0WEF7	GIY-YIG domain-containing protein	NA
UHGV-0104964_8	PADLOC	HEase_00030	homing endonuclease	RM
UHGV-0104964_8	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0104964_8	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0104964_8	Structural annotation	PF19835, TIGR01453	NA	NA
UHGV-0104964_10	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0104964_10	eggNOG-mapper	762051.LKI_01980	NA	NA
UHGV-0104964_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0104964_10	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0104964_10	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0104964_11	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0104964_11	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0104964_13	PHROG	phrog_5070	NA	unknown function
UHGV-0104964_13	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0104964_13	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0104964_13	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0104964_13	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0104964_13	Structural annotation	NF040481	NA	NA
UHGV-0104964_16	PHROG	phrog_14970	NA	unknown function
UHGV-0104964_16	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0104964_16	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0104964_16	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0104964_17	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0104964_17	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0104964_17	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0104964_17	Structural annotation	PF05772	NA	NA
UHGV-0104964_18	PHROG	phrog_7566	NA	unknown function
UHGV-0104964_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0104964_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0104964_19	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0104964_19	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0104964_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0104964_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0104964_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0104964_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0104964_19	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0104964_20	PHROG	phrog_4973	NA	unknown function
UHGV-0104964_20	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0104964_20	eggNOG-mapper	584708.Apau_1668	Helix-turn-helix domain	NA
UHGV-0104964_20	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0104964_20	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0104964_21	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0104964_21	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0104964_21	UniRef90	UniRef90_A0A318KSV9	DnaD/phage-associated family protein	NA
UHGV-0104964_21	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0104964_21	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0104964_21	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0104964_21	Structural annotation	PF07106, PF07261, MF_01177, TIGR01714, TIGR01446, COG5529	NA	NA
UHGV-0104964_22	Structural annotation	PF11417	NA	NA
UHGV-0104964_24	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0104964_24	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0104964_24	UniRef90	UniRef90_UPI0009E1B041	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0104964_24	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0104964_24	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0104964_24	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0104964_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0104964_24	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0104964_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0104964_25	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0104964_25	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0104964_25	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0104964_25	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0104964_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0104964_25	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0104964_26	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0104964_26	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0104964_26	UniRef90	UniRef90_A0A3A6E967	Methyltransferase	NA
UHGV-0104964_26	eggNOG-mapper	1449342.JQMR01000001_gene1025	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0104964_26	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0104964_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0104964_26	COG	COG0863	DNA modification methylase	NA
UHGV-0104964_26	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0104964_32	UniRef90	UniRef90_A0A3A6ECV8	NA	NA
UHGV-0104964_32	Structural annotation	NF041588	NA	NA
UHGV-0104964_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0104964_33	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0104964_33	Pfam	PF07374	NA	DUF1492
UHGV-0104964_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0104964_33	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0104964_34	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0104964_34	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0104964_34	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0104964_34	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0104964_34	Structural annotation	PF16677	NA	NA
UHGV-0104964_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104964_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0104964_35	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0104964_35	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0104964_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0104964_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0104964_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0104964_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104964_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0104964_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0104964_36	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0104964_36	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0104964_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0104964_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0104964_37	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0104964_37	UniRef90	UniRef90_A0A3A9EHQ6	Phage_Mu_F domain-containing protein	NA
UHGV-0104964_37	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0104964_37	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0104964_37	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0104964_37	COG	COG2369	NA	NA
UHGV-0104964_37	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0104964_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0104964_38	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0104964_38	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0104964_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0104964_38	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0104964_38	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0104964_39	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0104964_39	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0104964_39	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0104964_40	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0104964_40	Structural annotation	PF06810	NA	NA
UHGV-0104964_41	PHROG	phrog_544	major head protein	head and packaging
UHGV-0104964_41	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0104964_41	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0104964_41	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0104964_43	PHROG	phrog_17977	NA	unknown function
UHGV-0104964_43	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0104964_43	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0104964_44	Structural annotation	PF11367	NA	NA
UHGV-0104964_45	PHROG	phrog_885	major tail protein	tail
UHGV-0104964_45	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0104964_45	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0104964_45	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0104964_46	PHROG	phrog_18646	NA	unknown function
UHGV-0104964_48	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0104964_48	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0104964_48	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0104964_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0104964_48	Structural annotation	PF20155	NA	NA
UHGV-0104964_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0104964_49	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0104964_49	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0104964_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-0104964_49	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0104964_50	PHROG	phrog_538	minor tail protein	tail
UHGV-0104964_50	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0104964_50	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0104964_50	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0104964_50	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0104964_51	PHROG	phrog_9534	head protein	head and packaging
UHGV-0104964_51	eggNOG-mapper	491915.Aflv_0675	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0104964_51	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0104964_51	Structural annotation	PF18463, PF20747	NA	NA
UHGV-0104964_54	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0104964_54	PHROG	phrog_7698	endolysin	lysis
UHGV-0104964_54	UniRef90	UniRef90_E5DTQ2	Putative muramidase	NA
UHGV-0104964_54	eggNOG-mapper	1410624.JNKK01000045_gene544	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0104964_54	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0104964_54	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0104964_54	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0104964_54	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0104964_55	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-0104964_55	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0104964_56	PHROG	phrog_13256	NA	unknown function
UHGV-0104964_56	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0104964_57	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0104964_57	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0104964_57	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0104964_58	PHROG	phrog_3754	NA	unknown function
UHGV-0104964_58	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0104964_59	PHROG	phrog_21718	NA	unknown function
UHGV-0104964_59	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0104964_60	PHROG	phrog_22984	NA	unknown function
UHGV-0104964_61	PHROG	phrog_16490	NA	unknown function
UHGV-0104964_61	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0104964_62	PHROG	phrog_20016	NA	unknown function
UHGV-0104964_62	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0104964_62	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0104964_63	Structural annotation	PF12510	NA	NA
UHGV-0104964_64	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA