UHGV-0105006

Genome information

Genome length 37,645 bps

CDS count 60

Completeness 61.58% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105006
vOTU ID	vOTU-042400
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_258333
BioSample	SAMEA3708825
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	61.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.24
Jumbo phage	No

Genome content
Genome length	37,645 bps
GC content	41.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	89.55%
Average CDS length	564.80 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105006_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0105006_1	PHROG	phrog_435	endolysin	lysis
UHGV-0105006_1	UniRef90	UniRef90_A0A173UCF2	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-0105006_1	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0105006_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0105006_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0105006_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0105006_2	PHROG	phrog_443	holin	lysis
UHGV-0105006_2	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0105006_2	eggNOG-mapper	469596.HMPREF9488_02591	Putative lactococcus lactis phage r1t holin	NA
UHGV-0105006_2	Structural annotation	PF16945	NA	NA
UHGV-0105006_3	PHROG	phrog_937	hemolysin	other
UHGV-0105006_6	PHROG	phrog_17196	kinase	other
UHGV-0105006_6	UniRef90	UniRef90_A0A2M8Z316	Collagen triple helix repeat protein	NA
UHGV-0105006_6	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0105006_6	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0105006_7	PHROG	phrog_18190	NA	unknown function
UHGV-0105006_7	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0105006_7	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0105006_7	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0105006_7	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0105006_8	Pfam	PF20458	NA	DUF6711
UHGV-0105006_10	PHROG	phrog_706	NA	unknown function
UHGV-0105006_10	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0105006_10	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0105006_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0105006_10	Structural annotation	PF06854	NA	NA
UHGV-0105006_11	UniRef90	UniRef90_A0A3B9CD56	RNA polymerase subunit sigma	NA
UHGV-0105006_11	Structural annotation	PF10666	NA	NA
UHGV-0105006_12	PHROG	phrog_3099	NA	unknown function
UHGV-0105006_12	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0105006_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0105006_13	PHROG	phrog_3266	tail completion	connector
UHGV-0105006_13	eggNOG-mapper	1235790.C805_00081	NA	NA
UHGV-0105006_13	Structural annotation	PF12691	NA	NA
UHGV-0105006_14	PHROG	phrog_3366	NA	unknown function
UHGV-0105006_14	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0105006_14	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0105006_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0105006_15	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0105006_16	PHROG	phrog_247	major head protein	head and packaging
UHGV-0105006_16	UniRef90	UniRef90_A0A3R6GNQ1	Phage coat protein	NA
UHGV-0105006_16	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0105006_16	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0105006_16	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0105006_16	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0105006_17	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0105006_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0105006_19	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0105006_19	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-0105006_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0105006_19	COG	COG2369	NA	NA
UHGV-0105006_19	Structural annotation	PF06152	NA	NA
UHGV-0105006_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0105006_20	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-0105006_20	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0105006_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0105006_20	Structural annotation	PF11114	NA	NA
UHGV-0105006_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0105006_21	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0105006_21	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0105006_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0105006_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105006_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0105006_23	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0105006_23	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0105006_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0105006_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0105006_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105006_23	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0105006_25	PHROG	phrog_33130	NA	unknown function
UHGV-0105006_25	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0105006_25	Structural annotation	PF10922	NA	NA
UHGV-0105006_26	eggNOG-mapper	457421.CBFG_03465	NA	NA
UHGV-0105006_27	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0105006_28	eggNOG-mapper	760192.Halhy_5028	NA	NA
UHGV-0105006_28	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0105006_32	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0105006_32	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0105006_32	UniRef90	UniRef90_A0A4R3JPG1	Phage anti-repressor protein	NA
UHGV-0105006_32	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-0105006_32	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0105006_32	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0105006_32	COG	COG3617	Prophage antirepressor	NA
UHGV-0105006_32	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-0105006_33	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-0105006_34	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0105006_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105006_34	UniRef90	UniRef90_A0A3R6L120	XRE family transcriptional regulator	NA
UHGV-0105006_34	eggNOG-mapper	509191.AEDB02000078_gene1436	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0105006_34	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0105006_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105006_34	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0105006_34	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0105006_36	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0105006_38	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0105006_38	UniRef90	UniRef90_J9GA63	Prophage antirepressor-related protein	NA
UHGV-0105006_38	eggNOG-mapper	1151292.QEW_2476	BRO family, N-terminal domain	NA
UHGV-0105006_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0105006_38	COG	COG3617	Prophage antirepressor	NA
UHGV-0105006_38	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-0105006_41	PHROG	phrog_16304	NA	unknown function
UHGV-0105006_41	UniRef90	UniRef90_A0A173S8B3	NA	NA
UHGV-0105006_41	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0105006_41	Pfam	PF19808	NA	DUF6291
UHGV-0105006_41	Structural annotation	PF19808	NA	NA
UHGV-0105006_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0105006_42	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105006_42	UniRef90	UniRef90_A0A1C5MBR6	Endodeoxyribonuclease RusA	NA
UHGV-0105006_42	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0105006_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0105006_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0105006_42	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0105006_44	PHROG	phrog_7566	NA	unknown function
UHGV-0105006_44	UniRef90	UniRef90_UPI001C0181E7	phosphoenolpyruvate carboxykinase	NA
UHGV-0105006_44	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0105006_45	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0105006_45	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0105006_46	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0105006_46	UniRef90	UniRef90_UPI001C031D02	ERF family protein	NA
UHGV-0105006_46	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0105006_46	Pfam	PF04404	ERF superfamily	ERF
UHGV-0105006_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105006_46	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0105006_47	PHROG	phrog_674	NA	unknown function
UHGV-0105006_47	UniRef90	UniRef90_UPI001C01FE50	NA	NA
UHGV-0105006_47	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0105006_47	Pfam	PF07083	NA	DUF1351
UHGV-0105006_47	Structural annotation	PF07083	NA	NA
UHGV-0105006_50	Structural annotation	PF12750	NA	NA
UHGV-0105006_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105006_51	Structural annotation	PF13443, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0105006_54	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0105006_54	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0105006_54	UniRef90	UniRef90_A0A373CW16	Phage antirepressor Ant	NA
UHGV-0105006_54	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-0105006_54	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0105006_54	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0105006_54	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0105006_54	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0105006_56	UniRef90	UniRef90_UPI000E52936A	helix-turn-helix domain-containing protein	NA
UHGV-0105006_56	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0105006_56	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0105006_56	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0105006_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0105006_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105006_57	UniRef90	UniRef90_R5ZAU1	Conserved domain protein	NA
UHGV-0105006_57	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-0105006_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105006_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105006_57	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0105006_58	PHROG	phrog_19315	NA	unknown function
UHGV-0105006_58	UniRef90	UniRef90_UPI0015EB67C6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0105006_58	eggNOG-mapper	883156.HMPREF9282_00920	NA	NA
UHGV-0105006_58	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0105006_58	COG	COG1592	Rubrerythrin	NA
UHGV-0105006_58	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0105006_59	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0105006_59	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0105006_59	UniRef90	UniRef90_UPI001C017756	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0105006_59	eggNOG-mapper	1235792.C808_05257	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0105006_59	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0105006_59	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0105006_59	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0105006_60	KOfam	K14059	int; integrase	NA
UHGV-0105006_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0105006_60	UniRef90	UniRef90_A0A6L5YM13	Tyrosine-type recombinase/integrase	NA
UHGV-0105006_60	eggNOG-mapper	411468.CLOSCI_00325	Belongs to the 'phage' integrase family	NA
UHGV-0105006_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0105006_60	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA