UHGV-0105011

Genome information

Genome length 35,499 bps

CDS count 59

Completeness 95.66% (high-quality)

geNomad score 0.9450

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105011
vOTU ID	vOTU-073421
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_244937
BioSample	SAMEA3708812
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.66% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9450
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.67
Jumbo phage	No

Genome content
Genome length	35,499 bps
GC content	27.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	88.39%
Average CDS length	534.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105011_2	UniRef90	UniRef90_UPI00189DB114	NA	NA
UHGV-0105011_2	Structural annotation	PF13113, NF008362, COG3978	NA	NA
UHGV-0105011_4	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0105011_4	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0105011_4	UniRef90	UniRef90_UPI000CDAAB77	ParM/StbA family protein	NA
UHGV-0105011_4	eggNOG-mapper	1414720.CBYM010000040_gene1670	cell division	NA
UHGV-0105011_4	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0105011_4	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-0105011_4	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0105011_4	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0105011_6	UniRef90	UniRef90_A0A174DRJ2	Bacteriophage-like protein	NA
UHGV-0105011_6	eggNOG-mapper	1414720.CBYM010000040_gene1666	NA	NA
UHGV-0105011_6	Structural annotation	PF04492, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0105011_8	UniRef90	UniRef90_UPI001C0F6DA9	NA	NA
UHGV-0105011_8	eggNOG-mapper	1414720.CBYM010000040_gene1664	NA	NA
UHGV-0105011_8	Pfam	PF13151	NA	DUF3990
UHGV-0105011_8	COG	COG3209	NA	NA
UHGV-0105011_8	Structural annotation	PF13151	NA	NA
UHGV-0105011_10	UniRef90	UniRef90_UPI001C0D21DF	NA	NA
UHGV-0105011_10	Structural annotation	PF19865	NA	NA
UHGV-0105011_11	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0105011_11	PHROG	phrog_435	endolysin	lysis
UHGV-0105011_11	UniRef90	UniRef90_UPI00140FE253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0105011_11	eggNOG-mapper	1414720.CBYM010000002_gene552	Ami_3	NA
UHGV-0105011_11	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0105011_11	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0105011_11	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0105011_11	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0105011_12	PHROG	phrog_199	holin	lysis
UHGV-0105011_12	UniRef90	UniRef90_A0A174D4Y4	Toxin secretion/phage lysis holin	NA
UHGV-0105011_12	eggNOG-mapper	1414720.CBYM010000040_gene1662	Bacteriophage holin family	NA
UHGV-0105011_12	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0105011_12	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0105011_12	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0105011_12	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0105011_13	eggNOG-mapper	1033737.CAEV01000097_gene1816	NA	NA
UHGV-0105011_16	PHROG	phrog_2232	NA	unknown function
UHGV-0105011_16	UniRef90	UniRef90_UPI00189720E3	NA	NA
UHGV-0105011_16	eggNOG-mapper	1121930.AQXG01000001_gene1416	NA	NA
UHGV-0105011_16	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0105011_16	COG	COG5470	NA	NA
UHGV-0105011_16	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0105011_17	PHROG	phrog_5384	NA	unknown function
UHGV-0105011_17	eggNOG-mapper	1522092.A0A090DCS4_9CAUD	NA	NA
UHGV-0105011_18	PHROG	phrog_24388	NA	unknown function
UHGV-0105011_18	eggNOG-mapper	1414720.CBYM010000001_gene710	NA	NA
UHGV-0105011_19	Structural annotation	PF13157, MF_01372, NF040827, COG3542	NA	NA
UHGV-0105011_20	PHROG	phrog_3558	tail protein	tail
UHGV-0105011_20	UniRef90	UniRef90_A0A1C6KQ97	Phage-related protein	NA
UHGV-0105011_20	eggNOG-mapper	1414720.CBYM010000040_gene1657	Phage minor structural protein, N-terminal	NA
UHGV-0105011_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0105011_20	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0105011_20	COG	COG4926	Phage-related protein	NA
UHGV-0105011_20	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0105011_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0105011_21	UniRef90	UniRef90_A0A1C6KPN3	Phage-related protein	NA
UHGV-0105011_21	eggNOG-mapper	1414720.CBYM010000001_gene708	PFAM Phage tail protein	NA
UHGV-0105011_21	COG	COG4722	Phage-related protein YomH	NA
UHGV-0105011_21	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0105011_22	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0105011_22	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0105011_22	UniRef90	UniRef90_A0A1C5VEY4	Phage-related minor tail protein	NA
UHGV-0105011_22	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0105011_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0105011_22	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0105011_22	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0105011_23	eggNOG-mapper	411902.CLOBOL_03873	NA	NA
UHGV-0105011_23	Structural annotation	PF17388	NA	NA
UHGV-0105011_24	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0105011_24	eggNOG-mapper	588581.Cpap_1267	NA	NA
UHGV-0105011_24	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0105011_25	eggNOG-mapper	698758.AXY_02180	NA	NA
UHGV-0105011_25	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0105011_26	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0105011_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0105011_26	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0105011_27	PHROG	phrog_19734	NA	unknown function
UHGV-0105011_27	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0105011_27	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0105011_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0105011_28	PHROG	phrog_749	NA	unknown function
UHGV-0105011_28	eggNOG-mapper	1415774.U728_1251	NA	NA
UHGV-0105011_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0105011_29	UniRef90	UniRef90_UPI0008304135	phage major capsid protein	NA
UHGV-0105011_29	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0105011_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0105011_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0105011_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0105011_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0105011_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0105011_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0105011_30	UniRef90	UniRef90_A0A6B4KMA0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0105011_30	eggNOG-mapper	1415774.U728_1253	Belongs to the peptidase S14 family	NA
UHGV-0105011_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0105011_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0105011_30	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0105011_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0105011_31	UniRef90	UniRef90_UPI001A9A8447	phage portal protein	NA
UHGV-0105011_31	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0105011_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0105011_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0105011_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0105011_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0105011_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0105011_32	UniRef90	UniRef90_A0A3D3TQL2	Terminase large subunit	NA
UHGV-0105011_32	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0105011_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0105011_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0105011_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0105011_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0105011_33	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0105011_33	UniRef90	UniRef90_A0A0F3FVP5	RNA polymerase sigma 70	NA
UHGV-0105011_33	eggNOG-mapper	1211817.CCAT010000008_gene938	Phage terminase, small subunit	NA
UHGV-0105011_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0105011_33	COG	COG5484	NA	NA
UHGV-0105011_33	Structural annotation	PF05119, PF06056, TIGR01558, COG3747	NA	NA
UHGV-0105011_34	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0105011_34	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105011_34	UniRef90	UniRef90_UPI001178285D	HNH endonuclease	NA
UHGV-0105011_34	eggNOG-mapper	1415774.U728_1257	HNH nucleases	NA
UHGV-0105011_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0105011_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0105011_35	PHROG	phrog_17982	NA	unknown function
UHGV-0105011_35	UniRef90	UniRef90_A0A1C3YUS4	NA	NA
UHGV-0105011_35	eggNOG-mapper	105422.BBPM01000016_gene2209	NA	NA
UHGV-0105011_35	Pfam	PF14020	NA	DUF4236
UHGV-0105011_36	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0105011_36	PHROG	phrog_216	integrase	integration and excision
UHGV-0105011_36	UniRef90	UniRef90_A0A1F1KZD3	Integrase	NA
UHGV-0105011_36	eggNOG-mapper	1415774.U728_1259	integrase family	NA
UHGV-0105011_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105011_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0105011_36	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0105011_37	PHROG	phrog_3928	NA	unknown function
UHGV-0105011_37	eggNOG-mapper	1414720.CBYM010000040_gene1639	NA	NA
UHGV-0105011_38	UniRef90	UniRef90_UPI0018A8EB18	NA	NA
UHGV-0105011_38	eggNOG-mapper	1414720.CBYM010000040_gene1638	NA	NA
UHGV-0105011_38	Structural annotation	PF04545, MF_00683, NF008895	NA	NA
UHGV-0105011_43	Structural annotation	PF11148, MF_01553, COG5503	NA	NA
UHGV-0105011_44	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105011_44	UniRef90	UniRef90_A0A410PPK7	HTH myb-type domain-containing protein	NA
UHGV-0105011_44	eggNOG-mapper	1196322.A370_05734	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0105011_44	Pfam	PF13921	Myb-like DNA-binding domain	Myb_DNA-bind_6
UHGV-0105011_44	Pfam	PF07750	GcrA cell cycle regulator	GcrA
UHGV-0105011_44	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0105011_44	Structural annotation	PF01710, NF040595, COG5147	NA	NA
UHGV-0105011_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0105011_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0105011_45	UniRef90	UniRef90_UPI0018AC5EC3	single-stranded DNA-binding protein	NA
UHGV-0105011_45	eggNOG-mapper	1414720.CBYM010000001_gene680	Single-stranded DNA-binding protein	NA
UHGV-0105011_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105011_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0105011_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105011_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0105011_45	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0105011_48	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0105011_48	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0105011_48	UniRef90	UniRef90_A0A1C6JJ89	DNA replication protein	NA
UHGV-0105011_48	eggNOG-mapper	1414720.CBYM010000001_gene676	PFAM IstB-like ATP binding protein	NA
UHGV-0105011_48	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0105011_48	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0105011_48	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0105011_49	PHROG	phrog_1163	NA	unknown function
UHGV-0105011_49	UniRef90	UniRef90_A0A1C6KB85	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0105011_49	eggNOG-mapper	1414720.CBYM010000001_gene675	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0105011_49	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0105011_49	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0105011_49	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0105011_49	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG3388	NA	NA
UHGV-0105011_50	KOfam	K06376	spo0E; stage 0 sporulation regulatory protein	NA
UHGV-0105011_50	UniRef90	UniRef90_A0A1C6HV05	Spo0E like sporulation regulatory protein	NA
UHGV-0105011_50	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0105011_50	Structural annotation	PF09388	NA	NA
UHGV-0105011_52	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0105011_52	UniRef90	UniRef90_UPI0018AC2428	Rha family transcriptional regulator	NA
UHGV-0105011_52	eggNOG-mapper	1414720.CBYM010000002_gene582	ORF6C domain	NA
UHGV-0105011_52	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0105011_52	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0105011_52	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0105011_52	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0105011_52	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0105011_54	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0105011_54	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0105011_54	UniRef90	UniRef90_UPI00085BBE37	helix-turn-helix domain-containing protein	NA
UHGV-0105011_54	eggNOG-mapper	1487921.DP68_08680	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0105011_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105011_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105011_54	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0105011_55	UniRef90	UniRef90_UPI00084D082C	helix-turn-helix domain-containing protein	NA
UHGV-0105011_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105011_55	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0105011_55	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0105011_56	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0105011_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105011_56	UniRef90	UniRef90_UPI0004867CC9	helix-turn-helix domain-containing protein	NA
UHGV-0105011_56	eggNOG-mapper	1211817.CCAT010000003_gene272	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105011_56	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0105011_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105011_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105011_58	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0105011_58	PHROG	phrog_95	integrase	integration and excision
UHGV-0105011_58	UniRef90	UniRef90_A0A1C6HWU7	DNA-invertase hin	NA
UHGV-0105011_58	eggNOG-mapper	1414720.CBYM010000006_gene1187	resolvase	NA
UHGV-0105011_58	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0105011_58	Pfam	PF07508	Recombinase	Recombinase
UHGV-0105011_58	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0105011_58	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0105011_58	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0105011_59	UniRef90	UniRef90_A0A1C6HWG1	NMT1 domain-containing protein	NA
UHGV-0105011_59	eggNOG-mapper	1414720.CBYM010000006_gene1188	NMT1/THI5 like	NA
UHGV-0105011_59	Pfam	PF09084	NMT1/THI5 like	NMT1
UHGV-0105011_59	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA