UHGV-0105147

Genome information

Genome length 42,534 bps

CDS count 71

Completeness 100.00% (complete)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105147
vOTU ID	vOTU-045506
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_250583
BioSample	SAMEA3708899
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.8
Jumbo phage	No

Genome content
Genome length	42,534 bps
GC content	52.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	89.04%
Average CDS length	539.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105147_1	PHROG	phrog_3136	NA	unknown function
UHGV-0105147_1	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0105147_1	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0105147_1	Pfam	PF04266	ASCH domain	ASCH
UHGV-0105147_1	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0105147_1	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0105147_2	PHROG	phrog_22543	NA	unknown function
UHGV-0105147_2	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0105147_4	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0105147_4	Structural annotation	TIGR01636	NA	NA
UHGV-0105147_5	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0105147_5	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0105147_5	Structural annotation	PF13542	NA	NA
UHGV-0105147_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105147_6	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0105147_6	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0105147_6	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0105147_6	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0105147_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0105147_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105147_6	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0105147_7	PHROG	phrog_533	portal protein	head and packaging
UHGV-0105147_7	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0105147_7	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0105147_7	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0105147_7	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0105147_9	PHROG	phrog_9479	NA	unknown function
UHGV-0105147_9	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-0105147_9	Structural annotation	PF15529	NA	NA
UHGV-0105147_10	PHROG	phrog_8680	NA	unknown function
UHGV-0105147_10	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0105147_10	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0105147_10	Pfam	PF14386	NA	DUF4417
UHGV-0105147_10	Structural annotation	PF14386	NA	NA
UHGV-0105147_11	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0105147_11	UniRef90	UniRef90_U2SBR7	Ntox50 domain-containing protein	NA
UHGV-0105147_11	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0105147_11	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0105147_11	COG	COG2369	NA	NA
UHGV-0105147_11	Structural annotation	PF06152	NA	NA
UHGV-0105147_12	Structural annotation	PF07258, MF_01194, TIGR02097	NA	NA
UHGV-0105147_13	Structural annotation	PF18152	NA	NA
UHGV-0105147_14	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0105147_14	Structural annotation	PF06810	NA	NA
UHGV-0105147_15	PHROG	phrog_544	major head protein	head and packaging
UHGV-0105147_15	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0105147_15	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0105147_15	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0105147_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0105147_16	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0105147_17	PHROG	phrog_3366	NA	unknown function
UHGV-0105147_17	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0105147_17	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0105147_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0105147_18	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0105147_18	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0105147_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0105147_18	Structural annotation	PF11114	NA	NA
UHGV-0105147_19	PHROG	phrog_3266	tail completion	connector
UHGV-0105147_19	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0105147_19	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0105147_19	Structural annotation	PF12691	NA	NA
UHGV-0105147_20	PHROG	phrog_3099	NA	unknown function
UHGV-0105147_20	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0105147_20	Structural annotation	TIGR02126	NA	NA
UHGV-0105147_21	PHROG	phrog_11299	NA	unknown function
UHGV-0105147_21	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0105147_21	Structural annotation	PF10666	NA	NA
UHGV-0105147_22	PHROG	phrog_706	NA	unknown function
UHGV-0105147_22	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0105147_22	eggNOG-mapper	1235797.C816_04184	Bacteriophage Gp15 protein	NA
UHGV-0105147_22	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0105147_22	Structural annotation	PF06854	NA	NA
UHGV-0105147_23	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0105147_24	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0105147_24	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0105147_24	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0105147_24	COG	COG1511	NA	NA
UHGV-0105147_24	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0105147_25	KOfam	K08135	COL15A; collagen type XV alpha	NA
UHGV-0105147_25	PHROG	phrog_6616	tail protein	tail
UHGV-0105147_25	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0105147_25	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0105147_25	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0105147_26	PHROG	phrog_372	tail protein	tail
UHGV-0105147_26	UniRef90	UniRef90_UPI000B8B5168	NA	NA
UHGV-0105147_26	eggNOG-mapper	908340.HMPREF9406_0178	NA	NA
UHGV-0105147_26	Pfam	PF05895	NA	DUF859
UHGV-0105147_26	COG	COG4675	Phage tail collar domain	NA
UHGV-0105147_26	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-0105147_27	PHROG	phrog_1863	NA	unknown function
UHGV-0105147_27	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0105147_28	PHROG	phrog_1129	holin	lysis
UHGV-0105147_28	UniRef90	UniRef90_A0A810PUU2	Holin	NA
UHGV-0105147_28	eggNOG-mapper	1410668.JNKC01000001_gene1676	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0105147_28	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0105147_28	Structural annotation	PF06946	NA	NA
UHGV-0105147_29	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0105147_29	PHROG	phrog_435	endolysin	lysis
UHGV-0105147_29	UniRef90	UniRef90_A0A810PZ73	SPOR domain-containing protein	NA
UHGV-0105147_29	eggNOG-mapper	411473.RUMCAL_02267	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0105147_29	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0105147_29	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0105147_29	Pfam	PF05036	SPOR domain	SPOR
UHGV-0105147_29	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0105147_29	Structural annotation	PF01520, PF08230, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0105147_31	PHROG	phrog_3754	NA	unknown function
UHGV-0105147_31	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0105147_32	PHROG	phrog_21718	NA	unknown function
UHGV-0105147_32	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0105147_33	PHROG	phrog_22984	NA	unknown function
UHGV-0105147_34	PHROG	phrog_16490	NA	unknown function
UHGV-0105147_34	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0105147_35	PHROG	phrog_20016	NA	unknown function
UHGV-0105147_35	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0105147_35	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0105147_35	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0105147_36	PHROG	phrog_28802	NA	unknown function
UHGV-0105147_36	Structural annotation	PF12510	NA	NA
UHGV-0105147_37	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0105147_38	KOfam	K14059	int; integrase	NA
UHGV-0105147_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0105147_38	UniRef90	UniRef90_A0A810Q0L1	Tyr recombinase domain-containing protein	NA
UHGV-0105147_38	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0105147_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105147_38	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0105147_38	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0105147_39	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0105147_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105147_39	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0105147_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0105147_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105147_44	UniRef90	UniRef90_A0A810Q1T1	HTH cro/C1-type domain-containing protein	NA
UHGV-0105147_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105147_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105147_44	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-0105147_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0105147_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105147_45	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0105147_45	eggNOG-mapper	697329.Rumal_2813	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105147_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105147_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105147_45	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0105147_46	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0105147_47	PHROG	phrog_15946	NA	unknown function
UHGV-0105147_47	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0105147_48	Structural annotation	TIGR01898, COG1604	NA	NA
UHGV-0105147_53	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0105147_53	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-0105147_53	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0105147_53	Pfam	PF04404	ERF superfamily	ERF
UHGV-0105147_53	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0105147_54	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0105147_54	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0105147_54	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0105147_54	Structural annotation	PF05772	NA	NA
UHGV-0105147_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0105147_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0105147_56	UniRef90	UniRef90_A0A810PUK9	Single-stranded DNA-binding protein	NA
UHGV-0105147_56	eggNOG-mapper	1203606.HMPREF1526_01880	Single-stranded DNA-binding protein	NA
UHGV-0105147_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105147_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0105147_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105147_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0105147_56	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0105147_57	PHROG	phrog_15768	NA	unknown function
UHGV-0105147_57	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0105147_57	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0105147_57	Structural annotation	PF01475, MF_01819, NF006999, COG0735	NA	NA
UHGV-0105147_58	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0105147_58	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0105147_58	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0105147_58	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0105147_58	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0105147_58	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0105147_58	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0105147_59	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0105147_59	UniRef90	UniRef90_UPI0006A41431	DNA cytosine methyltransferase	NA
UHGV-0105147_59	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0105147_59	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0105147_59	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0105147_60	Structural annotation	TIGR00122, COG1654	NA	NA
UHGV-0105147_61	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0105147_61	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0105147_61	UniRef90	UniRef90_UPI0011780395	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0105147_61	eggNOG-mapper	537013.CLOSTMETH_01340	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0105147_61	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0105147_61	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0105147_62	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0105147_62	UniRef90	UniRef90_UPI001AA0C24D	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0105147_62	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0105147_62	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0105147_63	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0105147_63	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105147_63	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0105147_63	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0105147_63	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0105147_63	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0105147_63	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0105147_66	PHROG	phrog_22529	NA	unknown function
UHGV-0105147_66	UniRef90	UniRef90_A0A810Q1V0	3D domain-containing protein	NA
UHGV-0105147_66	eggNOG-mapper	411463.EUBVEN_00667	3D domain	NA
UHGV-0105147_66	Pfam	PF06725	3D domain	3D
UHGV-0105147_66	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0105147_66	Structural annotation	PF06725, NF040670, COG3584	NA	NA
UHGV-0105147_67	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0105147_67	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0105147_67	UniRef90	UniRef90_D4K450	Methyltransferase	NA
UHGV-0105147_67	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0105147_67	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0105147_67	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0105147_67	COG	COG0863	DNA modification methylase	NA
UHGV-0105147_67	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0105147_71	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0105147_71	Structural annotation	PF18358	NA	NA