UHGV-0105212

Genome information

Genome length 42,962 bps

CDS count 68

Completeness 99.90% (high-quality)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105212
vOTU ID	vOTU-014705
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_236714
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.93
Jumbo phage	No

Genome content
Genome length	42,962 bps
GC content	39.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	90.38%
Average CDS length	575.21 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105212_2	PHROG	phrog_24103	NA	unknown function
UHGV-0105212_2	eggNOG-mapper	420247.Msm_1688	NA	NA
UHGV-0105212_4	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0105212_4	Structural annotation	PF09136	NA	NA
UHGV-0105212_5	PHROG	phrog_16164	NA	unknown function
UHGV-0105212_5	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0105212_5	Structural annotation	PF10651, TIGR02657	NA	NA
UHGV-0105212_6	PHROG	phrog_21765	NA	unknown function
UHGV-0105212_6	UniRef90	UniRef90_UPI000E4B80F2	collagen-like protein	NA
UHGV-0105212_6	eggNOG-mapper	476272.RUMHYD_03672	PFAM Collagen triple helix	NA
UHGV-0105212_6	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0105212_7	PHROG	phrog_13289	tail protein	tail
UHGV-0105212_7	UniRef90	UniRef90_A0A1Y4GWP8	Prophage_tail domain-containing protein	NA
UHGV-0105212_7	eggNOG-mapper	1232452.BAIB02000007_gene1613	NlpC/P60 family	NA
UHGV-0105212_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0105212_7	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0105212_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0105212_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0105212_7	Structural annotation	PF14594, TIGR01665, COG4926, COG3942	NA	NA
UHGV-0105212_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0105212_8	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-0105212_8	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0105212_8	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0105212_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0105212_8	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0105212_9	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0105212_9	PHROG	phrog_5218	NA	unknown function
UHGV-0105212_9	UniRef90	UniRef90_A0A829NMZ9	PhageMin_Tail domain-containing protein	NA
UHGV-0105212_9	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0105212_9	Pfam	PF20628	Dyp-type peroxidase, C-terminal	Dyp_perox_C
UHGV-0105212_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0105212_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0105212_9	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-0105212_10	Structural annotation	PF11282, TIGR03930	NA	NA
UHGV-0105212_12	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0105212_12	UniRef90	UniRef90_UPI001F33991D	Rha family transcriptional regulator	NA
UHGV-0105212_12	eggNOG-mapper	1567013.A0A0A7RVU3_9CAUD	NA	NA
UHGV-0105212_12	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0105212_12	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0105212_13	UniRef90	UniRef90_A0A845RC52	CopG family transcriptional regulator	NA
UHGV-0105212_13	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0105212_14	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0105212_14	UniRef90	UniRef90_UPI00156EB9E7	Rha family transcriptional regulator	NA
UHGV-0105212_14	eggNOG-mapper	411490.ANACAC_00702	phage regulatory protein, rha family	NA
UHGV-0105212_14	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0105212_14	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0105212_14	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0105212_14	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0105212_16	eggNOG-mapper	1123075.AUDP01000020_gene1519	NA	NA
UHGV-0105212_16	Structural annotation	PF11836	NA	NA
UHGV-0105212_17	PHROG	phrog_88	major tail protein	tail
UHGV-0105212_17	UniRef90	UniRef90_UPI001E4C44E4	major tail protein	NA
UHGV-0105212_17	eggNOG-mapper	1123075.AUDP01000020_gene1518	phage major tail protein, phi13 family	NA
UHGV-0105212_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0105212_17	COG	COG5492	NA	NA
UHGV-0105212_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0105212_18	UniRef90	UniRef90_UPI000E471C89	phage tail protein	NA
UHGV-0105212_18	eggNOG-mapper	97139.C824_05966	NA	NA
UHGV-0105212_18	Structural annotation	PF05657	NA	NA
UHGV-0105212_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0105212_19	UniRef90	UniRef90_A0A829NR05	HK97 gp10 family phage protein	NA
UHGV-0105212_19	eggNOG-mapper	97139.C824_05967	Phage protein, HK97 gp10 family	NA
UHGV-0105212_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0105212_19	Structural annotation	TIGR01725	NA	NA
UHGV-0105212_20	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0105212_20	eggNOG-mapper	97139.C824_05968	NA	NA
UHGV-0105212_20	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0105212_21	PHROG	phrog_5223	neck protein	connector
UHGV-0105212_21	eggNOG-mapper	1235792.C808_03062	NA	NA
UHGV-0105212_21	Structural annotation	TIGR01560	NA	NA
UHGV-0105212_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0105212_23	UniRef90	UniRef90_A0A829NVJ5	HK97 family phage major capsid protein	NA
UHGV-0105212_23	eggNOG-mapper	97139.C824_05970	Phage major capsid protein, HK97 family	NA
UHGV-0105212_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0105212_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0105212_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0105212_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0105212_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0105212_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0105212_24	UniRef90	UniRef90_F7JW12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0105212_24	eggNOG-mapper	411459.RUMOBE_00936	Belongs to the peptidase S14 family	NA
UHGV-0105212_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0105212_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0105212_24	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0105212_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0105212_25	UniRef90	UniRef90_F7JWF4	HK97 family phage portal protein	NA
UHGV-0105212_25	eggNOG-mapper	97139.C824_05972	Phage portal protein, HK97 family	NA
UHGV-0105212_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0105212_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0105212_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0105212_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0105212_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0105212_26	UniRef90	UniRef90_F7JW13	Phage terminase	NA
UHGV-0105212_26	eggNOG-mapper	97139.C824_05973	Terminase	NA
UHGV-0105212_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0105212_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0105212_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0105212_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0105212_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0105212_27	UniRef90	UniRef90_A0A3D4X7R2	Phage terminase small subunit P27 family	NA
UHGV-0105212_27	eggNOG-mapper	1235792.C808_03067	Phage terminase, small subunit	NA
UHGV-0105212_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0105212_27	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0105212_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0105212_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0105212_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105212_28	UniRef90	UniRef90_A0A829NTQ4	HNH domain-containing protein	NA
UHGV-0105212_28	eggNOG-mapper	411459.RUMOBE_00940	HNH endonuclease	NA
UHGV-0105212_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0105212_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0105212_28	Structural annotation	PF05766	NA	NA
UHGV-0105212_29	eggNOG-mapper	553973.CLOHYLEM_05570	NA	NA
UHGV-0105212_31	UniRef90	UniRef90_A0A3R6T240	NA	NA
UHGV-0105212_31	Structural annotation	PF14213	NA	NA
UHGV-0105212_32	eggNOG-mapper	515620.EUBELI_20304	NA	NA
UHGV-0105212_32	Structural annotation	MF_00637, TIGR01925, COG2172	NA	NA
UHGV-0105212_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0105212_33	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0105212_33	Structural annotation	PF02996	NA	NA
UHGV-0105212_36	Structural annotation	PF02895	NA	NA
UHGV-0105212_38	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0105212_38	UniRef90	UniRef90_A0A8B3BXT6	Class I SAM-dependent methyltransferase	NA
UHGV-0105212_38	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0105212_38	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0105212_38	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0105212_38	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0105212_38	Structural annotation	PF05148, MF_00735, NF033398, COG1041	NA	NA
UHGV-0105212_39	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0105212_39	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0105212_39	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0105212_39	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0105212_39	Structural annotation	PF14354, TIGR03655, COG3811	NA	NA
UHGV-0105212_40	PHROG	phrog_10714	NA	unknown function
UHGV-0105212_40	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-0105212_40	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0105212_42	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0105212_42	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0105212_42	UniRef90	UniRef90_A0A6N3DEG0	PAPS_reduct domain-containing protein	NA
UHGV-0105212_42	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0105212_42	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0105212_42	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0105212_42	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0105212_42	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0105212_44	PHROG	phrog_26861	NA	unknown function
UHGV-0105212_44	UniRef90	UniRef90_A0A1C5X384	Single-stranded DNA-binding protein	NA
UHGV-0105212_44	eggNOG-mapper	935948.KE386494_gene418	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0105212_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105212_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105212_45	PHROG	phrog_24386	NA	unknown function
UHGV-0105212_45	eggNOG-mapper	1235799.C818_04203	COG NOG28949 non supervised orthologous group	NA
UHGV-0105212_45	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0105212_45	Structural annotation	TIGR01689	NA	NA
UHGV-0105212_46	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-0105212_47	PHROG	phrog_7566	NA	unknown function
UHGV-0105212_47	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0105212_48	KOfam	K14159	rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7]	NA
UHGV-0105212_48	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0105212_48	UniRef90	UniRef90_A0A414UW29	RNase H type-1 domain-containing protein	NA
UHGV-0105212_48	eggNOG-mapper	1235792.C808_03083	RNase H	NA
UHGV-0105212_48	Pfam	PF00075	RNase H	RNase_H
UHGV-0105212_48	COG	COG0328	Ribonuclease HI	NA
UHGV-0105212_48	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0105212_49	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0105212_49	eggNOG-mapper	1232453.BAIF02000027_gene4199	NA	NA
UHGV-0105212_49	Structural annotation	PF01446	NA	NA
UHGV-0105212_53	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0105212_53	Structural annotation	PF10743, NF040990, COG3311	NA	NA
UHGV-0105212_55	PHROG	phrog_3675	NA	unknown function
UHGV-0105212_55	UniRef90	UniRef90_A0A7T3MNF8	Lactate permease	NA
UHGV-0105212_55	eggNOG-mapper	1118063.I7J6R8_9CAUD	NA	NA
UHGV-0105212_55	Structural annotation	PF08679, MF_01177, NF038268, COG1846	NA	NA
UHGV-0105212_56	PHROG	phrog_16447	NA	unknown function
UHGV-0105212_56	UniRef90	UniRef90_UPI001F167FB5	NA	NA
UHGV-0105212_56	eggNOG-mapper	1158614.I592_00605	NA	NA
UHGV-0105212_56	Pfam	PF10083	NA	DUF2321
UHGV-0105212_56	COG	COG4306	NA	NA
UHGV-0105212_56	Structural annotation	PF10083, COG4306	NA	NA
UHGV-0105212_57	UniRef90	UniRef90_A0A352P178	zinc_ribbon_2 domain-containing protein (Fragment)	NA
UHGV-0105212_57	Structural annotation	PF13248	NA	NA
UHGV-0105212_58	PHROG	phrog_585	NA	unknown function
UHGV-0105212_58	UniRef90	UniRef90_A0A413HZV5	NA	NA
UHGV-0105212_58	eggNOG-mapper	693746.OBV_25460	NA	NA
UHGV-0105212_58	Pfam	PF10711	NA	DUF2513
UHGV-0105212_58	Structural annotation	PF10711, TIGR03433, COG3355	NA	NA
UHGV-0105212_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105212_60	UniRef90	UniRef90_A0A372UGE9	XRE family transcriptional regulator	NA
UHGV-0105212_60	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0105212_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105212_60	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0105212_61	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0105212_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105212_61	UniRef90	UniRef90_A0A372UGD7	XRE family transcriptional regulator	NA
UHGV-0105212_61	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0105212_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105212_61	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0105212_61	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0105212_62	PHROG	phrog_87	metallo-protease	other
UHGV-0105212_62	UniRef90	UniRef90_A0A829NVG0	Peptidase_M78 domain-containing protein	NA
UHGV-0105212_62	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0105212_62	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0105212_62	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0105212_62	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0105212_63	PHROG	phrog_38135	NA	unknown function
UHGV-0105212_63	UniRef90	UniRef90_A0A1C5X461	Transcription initiation factor TFIID, subunit TAF12 (Also component of histone acetyltransferase SAGA)	NA
UHGV-0105212_63	eggNOG-mapper	411470.RUMGNA_02177	belongs to the thioredoxin family	NA
UHGV-0105212_63	Pfam	PF14020	NA	DUF4236
UHGV-0105212_63	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0105212_63	Structural annotation	PF14020	NA	NA
UHGV-0105212_64	PHROG	phrog_7115	NA	unknown function
UHGV-0105212_64	UniRef90	UniRef90_A0A412C4Y3	PH domain-containing protein	NA
UHGV-0105212_64	eggNOG-mapper	476272.RUMHYD_02184	Bacterial PH domain	NA
UHGV-0105212_64	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0105212_65	PHROG	phrog_10226	NA	unknown function
UHGV-0105212_65	eggNOG-mapper	1291050.JAGE01000002_gene3330	Restriction endonuclease	NA
UHGV-0105212_65	COG	COG1715	Restriction endonuclease Mrr	NA
UHGV-0105212_65	Structural annotation	COG4127	NA	NA
UHGV-0105212_67	PHROG	phrog_16228	NA	unknown function
UHGV-0105212_67	UniRef90	UniRef90_A0A2N5NUN7	Uma2 domain-containing protein	NA
UHGV-0105212_67	eggNOG-mapper	500632.CLONEX_01584	Putative restriction endonuclease	NA
UHGV-0105212_67	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0105212_67	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0105212_67	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0105212_68	KOfam	K14059	int; integrase	NA
UHGV-0105212_68	PHROG	phrog_1	integrase	integration and excision
UHGV-0105212_68	UniRef90	UniRef90_A0A829NH64	Tyr recombinase domain-containing protein	NA
UHGV-0105212_68	eggNOG-mapper	1232453.BAIF02000010_gene3323	Phage integrase family	NA
UHGV-0105212_68	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105212_68	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0105212_68	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA