UHGV-0105214

Genome information

Genome length 47,936 bps

CDS count 68

Completeness 97.03% (high-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105214
vOTU ID	vOTU-075084
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_236711
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.03% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.37
Jumbo phage	No

Genome content
Genome length	47,936 bps
GC content	46.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	91.32%
Average CDS length	649.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105214_1	KOfam	K14059	int; integrase	NA
UHGV-0105214_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0105214_1	UniRef90	UniRef90_UPI001D09988C	site-specific integrase	NA
UHGV-0105214_1	eggNOG-mapper	592028.GCWU000321_00309	Belongs to the 'phage' integrase family	NA
UHGV-0105214_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0105214_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105214_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0105214_1	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0105214_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0105214_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0105214_2	UniRef90	UniRef90_UPI0009F1A07C	helix-turn-helix domain-containing protein	NA
UHGV-0105214_2	eggNOG-mapper	1000569.HMPREF1040_0220	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0105214_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0105214_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105214_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0105214_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0105214_2	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974	NA	NA
UHGV-0105214_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0105214_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105214_3	UniRef90	UniRef90_UPI00148B2047	helix-turn-helix transcriptional regulator	NA
UHGV-0105214_3	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105214_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105214_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0105214_4	eggNOG-mapper	592028.GCWU000321_00315	NA	NA
UHGV-0105214_4	Pfam	PF20063	NA	DUF6462
UHGV-0105214_5	PHROG	phrog_14367	NA	unknown function
UHGV-0105214_5	UniRef90	UniRef90_H1CYZ6	LysM domain-containing protein	NA
UHGV-0105214_5	eggNOG-mapper	568816.Acin_1254	LysM domain	NA
UHGV-0105214_5	Pfam	PF01476	LysM domain	LysM
UHGV-0105214_5	COG	COG1388	LysM repeat	NA
UHGV-0105214_5	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0105214_7	PHROG	phrog_674	NA	unknown function
UHGV-0105214_7	UniRef90	UniRef90_UPI000E71DE97	NA	NA
UHGV-0105214_7	eggNOG-mapper	318464.IO99_00465	NA	NA
UHGV-0105214_7	Pfam	PF07083	NA	DUF1351
UHGV-0105214_7	Structural annotation	PF07083	NA	NA
UHGV-0105214_8	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0105214_8	UniRef90	UniRef90_U7UBL1	AAA domain protein	NA
UHGV-0105214_8	eggNOG-mapper	910314.HMPREF9220_0634	AAA domain	NA
UHGV-0105214_8	Pfam	PF13479	AAA domain	AAA_24
UHGV-0105214_8	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0105214_9	PHROG	phrog_2698	NA	unknown function
UHGV-0105214_9	eggNOG-mapper	497964.CfE428DRAFT_1297	NA	NA
UHGV-0105214_9	Pfam	PF05037	NA	DUF669
UHGV-0105214_9	Structural annotation	PF05037, NF007495	NA	NA
UHGV-0105214_10	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0105214_10	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0105214_10	UniRef90	UniRef90_A0A354WRE6	DNA primase	NA
UHGV-0105214_10	eggNOG-mapper	910314.HMPREF9220_0631	Primase C terminal 2 (PriCT-2)	NA
UHGV-0105214_10	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0105214_10	Pfam	PF13481	AAA domain	AAA_25
UHGV-0105214_10	COG	COG3598	RecA-family ATPase	NA
UHGV-0105214_10	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0105214_13	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0105214_13	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0105214_13	UniRef90	UniRef90_UPI000D3CAAD8	HU family DNA-binding protein	NA
UHGV-0105214_13	eggNOG-mapper	1280666.ATVS01000013_gene784	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-0105214_13	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0105214_13	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0105214_13	Structural annotation	PF00216, MF_00381, TIGR00988, COG0776	NA	NA
UHGV-0105214_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0105214_14	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0105214_14	UniRef90	UniRef90_UPI001E638E1B	DNA cytosine methyltransferase	NA
UHGV-0105214_14	eggNOG-mapper	97139.C824_00743	C-5 cytosine-specific DNA methylase	NA
UHGV-0105214_14	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0105214_14	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0105214_14	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0105214_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0105214_14	Structural annotation	PF00145, MF_00812, NF007772, COG0270	NA	NA
UHGV-0105214_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0105214_16	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0105214_16	UniRef90	UniRef90_UPI0018E9D1D5	DNA cytosine methyltransferase	NA
UHGV-0105214_16	eggNOG-mapper	411473.RUMCAL_02519	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0105214_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0105214_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0105214_22	PHROG	phrog_16126	NA	unknown function
UHGV-0105214_23	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0105214_23	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0105214_23	UniRef90	UniRef90_A0A173ZVR9	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0105214_23	eggNOG-mapper	1401067.HMPREF0872_03915	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0105214_23	Pfam	PF00692	dUTPase	dUTPase
UHGV-0105214_23	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0105214_23	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0105214_24	PHROG	phrog_11947	NA	unknown function
UHGV-0105214_25	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105214_25	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0105214_25	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-0105214_25	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0105214_27	PHROG	phrog_236	nucleotide kinase	other
UHGV-0105214_27	UniRef90	UniRef90_UPI001478DC38	NA	NA
UHGV-0105214_27	Pfam	PF11753	NA	DUF3310
UHGV-0105214_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0105214_28	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-0105214_28	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0105214_29	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0105214_29	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0105214_30	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0105214_30	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0105214_30	UniRef90	UniRef90_E4LA55	Phage terminase large subunit (GpA)	NA
UHGV-0105214_30	eggNOG-mapper	910314.HMPREF9220_0622	Phage terminase large subunit (GpA)	NA
UHGV-0105214_30	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0105214_30	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0105214_30	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0105214_30	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0105214_32	PHROG	phrog_21	portal protein	head and packaging
UHGV-0105214_32	UniRef90	UniRef90_E4LA53	Phage portal protein, lambda family	NA
UHGV-0105214_32	eggNOG-mapper	910314.HMPREF9220_0620	Phage portal protein, lambda family	NA
UHGV-0105214_32	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0105214_32	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0105214_32	COG	COG5511	Phage capsid protein	NA
UHGV-0105214_32	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0105214_33	KOfam	K06904	NA	NA
UHGV-0105214_33	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0105214_33	UniRef90	UniRef90_E4LA52	Caudovirus prohead protease	NA
UHGV-0105214_33	eggNOG-mapper	910314.HMPREF9220_0619	Caudovirus prohead protease	NA
UHGV-0105214_33	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0105214_33	COG	COG3087	Cell division protein FtsN	NA
UHGV-0105214_33	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0105214_34	PHROG	phrog_122	head decoration	head and packaging
UHGV-0105214_34	UniRef90	UniRef90_A0A3E5AQC9	NA	NA
UHGV-0105214_34	eggNOG-mapper	411464.DESPIG_00879	NA	NA
UHGV-0105214_34	Pfam	PF09956	NA	DUF2190
UHGV-0105214_34	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0105214_34	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0105214_35	Structural annotation	PF13856, COG5614	NA	NA
UHGV-0105214_36	eggNOG-mapper	910314.HMPREF9220_0616	NA	NA
UHGV-0105214_36	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0105214_37	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0105214_38	PHROG	phrog_290	minor tail protein	tail
UHGV-0105214_38	UniRef90	UniRef90_UPI001032C993	phage tail tube protein	NA
UHGV-0105214_38	eggNOG-mapper	910314.HMPREF9220_0614	NA	NA
UHGV-0105214_38	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0105214_38	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0105214_41	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0105214_41	PHROG	phrog_30973	NA	unknown function
UHGV-0105214_41	UniRef90	UniRef90_E4LA45	NlpC/P60 domain-containing protein	NA
UHGV-0105214_41	eggNOG-mapper	910314.HMPREF9220_0612	nuclear chromosome segregation	NA
UHGV-0105214_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0105214_42	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0105214_43	PHROG	phrog_18	minor tail protein	tail
UHGV-0105214_43	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0105214_43	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0105214_43	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0105214_43	COG	COG4672	Phage tail protein	NA
UHGV-0105214_43	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0105214_44	KOfam	K13694	mepS, spr; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]	NA
UHGV-0105214_44	PHROG	phrog_329	minor tail protein	tail
UHGV-0105214_44	UniRef90	UniRef90_UPI00068174D5	NlpC/P60 family protein	NA
UHGV-0105214_44	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0105214_44	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0105214_44	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0105214_44	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0105214_45	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0105214_45	UniRef90	UniRef90_A0A349YR63	Phage-tail_3 domain-containing protein (Fragment)	NA
UHGV-0105214_45	eggNOG-mapper	1123489.AUAN01000010_gene347	cellulase activity	NA
UHGV-0105214_45	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0105214_45	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0105214_45	COG	COG1511	NA	NA
UHGV-0105214_45	Structural annotation	PF13550, PF14109, PF00041, PF03658, MF_00460, NF040662, TIGR01683, COG4733	NA	NA
UHGV-0105214_46	PHROG	phrog_6465	tail protein	tail
UHGV-0105214_46	UniRef90	UniRef90_K4F7V9	Putative structural protein	NA
UHGV-0105214_46	eggNOG-mapper	1123299.AUKZ01000026_gene848	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0105214_46	COG	COG4675	Phage tail collar domain	NA
UHGV-0105214_47	PHROG	phrog_5717	tail protein	tail
UHGV-0105214_47	eggNOG-mapper	1042156.CXIVA_07170	tail collar domain protein	NA
UHGV-0105214_47	COG	COG4675	Phage tail collar domain	NA
UHGV-0105214_48	UniRef90	UniRef90_UPI000E53CCA6	VCBS domain-containing protein	NA
UHGV-0105214_48	COG	COG4675	Phage tail collar domain	NA
UHGV-0105214_49	KOfam	K14059	int; integrase	NA
UHGV-0105214_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0105214_49	UniRef90	UniRef90_A0A3B9DV66	Recombinase XerC	NA
UHGV-0105214_49	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0105214_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105214_49	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0105214_49	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0105214_50	eggNOG-mapper	742743.HMPREF9453_00547	tail collar domain protein	NA
UHGV-0105214_50	COG	COG4675	Phage tail collar domain	NA
UHGV-0105214_51	PHROG	phrog_35892	NA	unknown function
UHGV-0105214_51	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0105214_54	eggNOG-mapper	742743.HMPREF9453_00545	NA	NA
UHGV-0105214_55	Structural annotation	PF10841	NA	NA
UHGV-0105214_56	PHROG	phrog_5867	endolysin	lysis
UHGV-0105214_56	UniRef90	UniRef90_A0A3B9DVP3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0105214_56	eggNOG-mapper	742743.HMPREF9453_00543	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0105214_56	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0105214_56	Structural annotation	MF_04111	NA	NA
UHGV-0105214_58	PHROG	phrog_10797	NA	unknown function
UHGV-0105214_58	UniRef90	UniRef90_A0A1B1I041	Glycoprotease	NA
UHGV-0105214_58	eggNOG-mapper	742743.HMPREF9453_00542	NA	NA
UHGV-0105214_58	Structural annotation	PF20132	NA	NA
UHGV-0105214_59	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0105214_59	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105214_59	UniRef90	UniRef90_UPI001D07CE99	HNH endonuclease	NA
UHGV-0105214_59	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0105214_59	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0105214_59	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0105214_59	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0105214_61	PHROG	phrog_10310	NA	unknown function