UHGV-0105234

Genome information

Genome length 33,388 bps

CDS count 48

Completeness 87.14% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105234
vOTU ID	vOTU-038824
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_269566
BioSample	SAMEA3879548
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.21
Jumbo phage	No

Genome content
Genome length	33,388 bps
GC content	42.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.08%
Average CDS length	651.69 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105234_1	UniRef90	UniRef90_UPI0018A0938C	InlB B-repeat-containing protein	NA
UHGV-0105234_1	eggNOG-mapper	1688.BCUN_1858	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0105234_1	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0105234_1	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0105234_1	Structural annotation	PF05895	NA	NA
UHGV-0105234_2	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0105234_2	UniRef90	UniRef90_UPI0006C2B16B	phage tail protein	NA
UHGV-0105234_2	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0105234_2	Structural annotation	PF14594, PF19081, TIGR01665, COG4926	NA	NA
UHGV-0105234_3	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0105234_3	UniRef90	UniRef90_A7B3U8	Putative phage tail component domain protein	NA
UHGV-0105234_3	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0105234_3	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0105234_3	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0105234_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0105234_3	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0105234_4	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0105234_4	UniRef90	UniRef90_A0A8B3C0A6	TMP_3 domain-containing protein	NA
UHGV-0105234_4	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0105234_4	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0105234_4	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0105234_4	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0105234_4	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0105234_5	PHROG	phrog_706	NA	unknown function
UHGV-0105234_5	UniRef90	UniRef90_A7B3U5	Bacteriophage Gp15 protein	NA
UHGV-0105234_5	eggNOG-mapper	411470.RUMGNA_02226	COG NOG24969 non supervised orthologous group	NA
UHGV-0105234_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0105234_5	Structural annotation	PF06854	NA	NA
UHGV-0105234_6	PHROG	phrog_4450	NA	unknown function
UHGV-0105234_6	UniRef90	UniRef90_A0A416RQL6	AP endonuclease	NA
UHGV-0105234_6	eggNOG-mapper	411470.RUMGNA_02225	NA	NA
UHGV-0105234_6	Pfam	PF20378	NA	DUF6673
UHGV-0105234_6	Structural annotation	PF20378	NA	NA
UHGV-0105234_7	PHROG	phrog_3099	NA	unknown function
UHGV-0105234_7	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0105234_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0105234_8	PHROG	phrog_3266	tail completion	connector
UHGV-0105234_8	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0105234_8	Structural annotation	PF12691	NA	NA
UHGV-0105234_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0105234_9	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0105234_9	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0105234_9	Structural annotation	PF11114	NA	NA
UHGV-0105234_10	PHROG	phrog_3366	NA	unknown function
UHGV-0105234_10	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0105234_10	Pfam	PF20536	NA	DUF6751
UHGV-0105234_10	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0105234_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0105234_11	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0105234_12	PHROG	phrog_422	major head protein	head and packaging
UHGV-0105234_12	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0105234_12	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0105234_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0105234_13	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-0105234_13	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0105234_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0105234_13	Structural annotation	PF06810	NA	NA
UHGV-0105234_14	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0105234_14	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0105234_14	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0105234_14	Pfam	PF14359	NA	DUF4406
UHGV-0105234_14	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0105234_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0105234_16	UniRef90	UniRef90_UPI001EE14397	phage minor capsid protein	NA
UHGV-0105234_16	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0105234_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0105234_16	COG	COG2369	NA	NA
UHGV-0105234_16	Structural annotation	PF06152, PF04002	NA	NA
UHGV-0105234_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0105234_17	UniRef90	UniRef90_A7B3T1	Putative phage minor capsid protein	NA
UHGV-0105234_17	eggNOG-mapper	411470.RUMGNA_02212	NA	NA
UHGV-0105234_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0105234_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105234_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0105234_18	UniRef90	UniRef90_A7B3T0	Phage terminase, large subunit, PBSX family	NA
UHGV-0105234_18	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0105234_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0105234_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105234_18	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0105234_19	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0105234_19	UniRef90	UniRef90_A0A2N5PKF8	Transposase	NA
UHGV-0105234_19	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0105234_19	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0105234_19	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0105234_19	Structural annotation	PF07141	NA	NA
UHGV-0105234_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0105234_20	UniRef90	UniRef90_A0A1C5X3K2	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0105234_20	eggNOG-mapper	411470.RUMGNA_02205	Sigma-70, region 4	NA
UHGV-0105234_20	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0105234_22	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0105234_24	PHROG	phrog_15198	NA	unknown function
UHGV-0105234_24	UniRef90	UniRef90_UPI001D04EA1D	NA	NA
UHGV-0105234_24	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0105234_24	Pfam	PF04448	NA	DUF551
UHGV-0105234_26	UniRef90	UniRef90_UPI001186151F	Lar family restriction alleviation protein	NA
UHGV-0105234_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0105234_27	PHROG	phrog_10714	NA	unknown function
UHGV-0105234_27	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-0105234_29	PHROG	phrog_17690	NA	unknown function
UHGV-0105234_29	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0105234_31	PHROG	phrog_2600	NA	unknown function
UHGV-0105234_31	eggNOG-mapper	1178540.BA70_18565	NA	NA
UHGV-0105234_32	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0105234_32	UniRef90	UniRef90_A0A2N5P5D6	Phage_rep_org_N domain-containing protein	NA
UHGV-0105234_32	eggNOG-mapper	1462526.BN990_03905	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0105234_32	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0105234_32	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0105234_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0105234_32	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0105234_33	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105234_33	UniRef90	UniRef90_A0A0F0CCS0	Endodeoxyribonuclease RusA	NA
UHGV-0105234_33	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0105234_33	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0105234_33	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0105234_34	PHROG	phrog_7566	NA	unknown function
UHGV-0105234_34	eggNOG-mapper	742733.HMPREF9469_01847	NA	NA
UHGV-0105234_35	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105234_35	UniRef90	UniRef90_A0A2N5P5E1	NA	NA
UHGV-0105234_35	eggNOG-mapper	33035.JPJF01000071_gene4463	NA	NA
UHGV-0105234_35	Pfam	PF12684	NA	DUF3799
UHGV-0105234_35	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0105234_35	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0105234_36	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0105234_36	UniRef90	UniRef90_A0A6N7W7U3	Recombinase RecT	NA
UHGV-0105234_36	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0105234_36	Pfam	PF03837	RecT family	RecT
UHGV-0105234_36	Structural annotation	TIGR01913, COG3723	NA	NA
UHGV-0105234_37	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0105234_37	PHROG	phrog_1499	NA	unknown function
UHGV-0105234_37	UniRef90	UniRef90_A0A2N5P5I0	AAA_23 domain-containing protein	NA
UHGV-0105234_37	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0105234_37	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0105234_37	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0105234_38	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105234_38	eggNOG-mapper	632245.CLP_1610	NA	NA
UHGV-0105234_38	Structural annotation	PF18337	NA	NA
UHGV-0105234_43	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0105234_43	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0105234_43	UniRef90	UniRef90_A0A2N5P5D9	AntA domain-containing protein	NA
UHGV-0105234_43	eggNOG-mapper	1408823.AXUS01000009_gene1978	AntA/AntB antirepressor	NA
UHGV-0105234_43	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0105234_43	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0105234_43	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0105234_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105234_44	UniRef90	UniRef90_A0A3A6GF44	XRE family transcriptional regulator	NA
UHGV-0105234_44	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105234_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105234_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105234_44	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0105234_45	PHROG	phrog_87	metallo-protease	other
UHGV-0105234_45	UniRef90	UniRef90_A0A3A6G714	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0105234_45	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0105234_45	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0105234_45	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0105234_45	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0105234_46	PHROG	phrog_1847	NA	unknown function
UHGV-0105234_46	UniRef90	UniRef90_A0A3A6GS55	NA	NA
UHGV-0105234_46	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0105234_46	Pfam	PF13250	NA	DUF4041
UHGV-0105234_46	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0105234_46	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0105234_46	Structural annotation	PF13250	NA	NA
UHGV-0105234_47	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0105234_47	PHROG	phrog_95	integrase	integration and excision
UHGV-0105234_47	UniRef90	UniRef90_A7B3P5	Resolvase, N-terminal domain protein	NA
UHGV-0105234_47	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-0105234_47	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0105234_47	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0105234_47	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0105234_48	UniRef90	UniRef90_UPI00189A0B83	ABC transporter substrate-binding protein	NA
UHGV-0105234_48	eggNOG-mapper	658088.HMPREF0987_00811	NMT1-like family	NA
UHGV-0105234_48	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA