UHGV-0105248

Genome information

Genome length 28,216 bps

CDS count 40

Completeness 70.20% (medium-quality)

geNomad score 0.9197

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105248
vOTU ID	vOTU-027709
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_252015
BioSample	SAMEA3708834
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9197
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.93
Jumbo phage	No

Genome content
Genome length	28,216 bps
GC content	34.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	91.99%
Average CDS length	652.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105248_1	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0105248_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105248_1	UniRef90	UniRef90_UPI001CD48953	helix-turn-helix transcriptional regulator	NA
UHGV-0105248_1	eggNOG-mapper	927704.SELR_11030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105248_1	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0105248_1	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0105248_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105248_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0105248_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0105248_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105248_2	UniRef90	UniRef90_UPI001CD48953	helix-turn-helix transcriptional regulator	NA
UHGV-0105248_2	eggNOG-mapper	1121121.KB894312_gene3203	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105248_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105248_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105248_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0105248_3	UniRef90	UniRef90_UPI001CD1D830	helix-turn-helix transcriptional regulator	NA
UHGV-0105248_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105248_3	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0105248_4	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0105248_4	UniRef90	UniRef90_UPI001CD727A8	helix-turn-helix transcriptional regulator	NA
UHGV-0105248_4	eggNOG-mapper	632518.Calow_0810	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105248_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105248_4	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0105248_4	Structural annotation	PF13560, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0105248_5	UniRef90	UniRef90_UPI001CD4C4F1	helix-turn-helix domain-containing protein	NA
UHGV-0105248_5	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0105248_5	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0105248_7	UniRef90	UniRef90_UPI001CD392E3	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0105248_7	eggNOG-mapper	1321814.HMPREF9089_00337	Lysin motif	NA
UHGV-0105248_7	Pfam	PF01476	LysM domain	LysM
UHGV-0105248_7	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0105248_8	eggNOG-mapper	1304866.K413DRAFT_2961	NA	NA
UHGV-0105248_8	Structural annotation	PF13463, MF_01819, NF008565, COG1846	NA	NA
UHGV-0105248_9	KOfam	K22222	cetZ; tubulin-like protein CetZ	NA
UHGV-0105248_9	PHROG	phrog_17961	NA	unknown function
UHGV-0105248_9	UniRef90	UniRef90_A0A7X5I836	Tubulin domain-containing protein	NA
UHGV-0105248_9	eggNOG-mapper	1235793.C809_02636	PFAM Tubulin FtsZ	NA
UHGV-0105248_9	Pfam	PF00091	Tubulin/FtsZ family, GTPase domain	Tubulin
UHGV-0105248_9	COG	COG0206	Cell division GTPase FtsZ	NA
UHGV-0105248_9	Structural annotation	PF00091, PF21011, MF_01946, TIGR00065, COG0206	NA	NA
UHGV-0105248_10	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0105248_10	eggNOG-mapper	610130.Closa_0713	NA	NA
UHGV-0105248_10	Structural annotation	PF11726	NA	NA
UHGV-0105248_11	KOfam	K03700	recU; recombination protein U	NA
UHGV-0105248_11	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105248_11	UniRef90	UniRef90_UPI001CD3D53F	Holliday junction resolvase RecU	NA
UHGV-0105248_11	eggNOG-mapper	1151292.QEW_0324	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0105248_11	Pfam	PF03838	Recombination protein U	RecU
UHGV-0105248_11	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0105248_11	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0105248_13	Structural annotation	PF05631, MF_01529, TIGR00900, COG2807	NA	NA
UHGV-0105248_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0105248_15	UniRef90	UniRef90_A0A412CHD7	NA	NA
UHGV-0105248_15	eggNOG-mapper	927704.SELR_11170	DNA-templated transcription, initiation	NA
UHGV-0105248_15	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0105248_15	Structural annotation	PF06530, TIGR01636, COG2739	NA	NA
UHGV-0105248_16	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0105248_16	UniRef90	UniRef90_UPI00195AD3A9	phage terminase small subunit	NA
UHGV-0105248_16	eggNOG-mapper	1123511.KB905868_gene188	DNA packaging	NA
UHGV-0105248_16	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0105248_16	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0105248_16	COG	COG5484	NA	NA
UHGV-0105248_16	Structural annotation	PF02796, NF040601, COG5484	NA	NA
UHGV-0105248_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105248_17	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0105248_17	UniRef90	UniRef90_H3K5B0	PBSX family phage terminase, large subunit	NA
UHGV-0105248_17	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0105248_17	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0105248_17	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0105248_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0105248_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105248_17	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0105248_18	PHROG	phrog_145	portal protein	head and packaging
UHGV-0105248_18	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-0105248_18	eggNOG-mapper	1273103.NM10_06801	NA	NA
UHGV-0105248_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0105248_19	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0105248_19	UniRef90	UniRef90_UPI00041DDA5E	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0105248_19	eggNOG-mapper	1232428.CAVO010000021_gene805	NA	NA
UHGV-0105248_20	eggNOG-mapper	411460.RUMTOR_01296	NA	NA
UHGV-0105248_21	UniRef90	UniRef90_R6EDQ1	Phage protein F-like protein	NA
UHGV-0105248_21	eggNOG-mapper	1235801.C822_00140	NA	NA
UHGV-0105248_23	PHROG	phrog_29127	NA	unknown function
UHGV-0105248_23	eggNOG-mapper	568816.Acin_1384	NA	NA
UHGV-0105248_24	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0105248_24	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0105248_24	UniRef90	UniRef90_UPI00195E0AD0	collagen-like protein	NA
UHGV-0105248_24	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0105248_25	UniRef90	UniRef90_S7HTD0	Phage minor structural protein GP20	NA
UHGV-0105248_25	eggNOG-mapper	1273103.NM10_01074	Phage minor structural protein GP20	NA
UHGV-0105248_25	Structural annotation	PF06810	NA	NA
UHGV-0105248_26	PHROG	phrog_247	major head protein	head and packaging
UHGV-0105248_26	UniRef90	UniRef90_UPI00195AB590	major capsid protein	NA
UHGV-0105248_26	eggNOG-mapper	1273103.NM10_01069	NA	NA
UHGV-0105248_26	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0105248_26	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0105248_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0105248_27	UniRef90	UniRef90_U7UGG7	Tail protein, HK97 family	NA
UHGV-0105248_27	eggNOG-mapper	1273103.NM10_06781	NA	NA
UHGV-0105248_27	Structural annotation	TIGR01725	NA	NA
UHGV-0105248_28	eggNOG-mapper	1111454.HMPREF1250_1049	NA	NA
UHGV-0105248_29	UniRef90	UniRef90_F9MMJ0	Conserved domain protein	NA
UHGV-0105248_29	eggNOG-mapper	1280706.AUJE01000003_gene2256	NA	NA
UHGV-0105248_29	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0105248_30	PHROG	phrog_1407	major tail protein	tail
UHGV-0105248_30	UniRef90	UniRef90_UPI001957B982	phage tail protein	NA
UHGV-0105248_30	eggNOG-mapper	1000569.HMPREF1040_0191	Phage tail tube protein	NA
UHGV-0105248_30	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0105248_30	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0105248_31	PHROG	phrog_2115	tail protein	tail
UHGV-0105248_31	Structural annotation	PF11836	NA	NA
UHGV-0105248_33	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0105248_33	UniRef90	UniRef90_UPI001EF4A38D	phage tail tape measure protein	NA
UHGV-0105248_33	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0105248_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0105248_33	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0105248_34	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0105248_34	UniRef90	UniRef90_UPI001957CC40	NA	NA
UHGV-0105248_34	eggNOG-mapper	457415.HMPREF1006_00475	NA	NA
UHGV-0105248_34	Pfam	PF09343	NA	DUF2460
UHGV-0105248_34	COG	COG5448	NA	NA
UHGV-0105248_34	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0105248_35	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0105248_35	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0105248_35	UniRef90	UniRef90_UPI001959F5E2	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0105248_35	eggNOG-mapper	645991.Sgly_2496	PFAM Uncharacterised protein family UPF0150	NA
UHGV-0105248_35	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0105248_35	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0105248_35	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0105248_36	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0105248_36	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0105248_36	UniRef90	UniRef90_D2RKP7	YcfA family protein	NA
UHGV-0105248_36	eggNOG-mapper	591001.Acfer_1288	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0105248_36	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0105248_36	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0105248_36	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0105248_37	PHROG	phrog_778	tail assembly protein	tail
UHGV-0105248_37	UniRef90	UniRef90_UPI00195E3FBB	NA	NA
UHGV-0105248_37	eggNOG-mapper	457415.HMPREF1006_00476	NA	NA
UHGV-0105248_37	Pfam	PF09931	NA	DUF2163
UHGV-0105248_37	Pfam	PF09356	Phage conserved hypothetical protein BR0599	Phage_BR0599
UHGV-0105248_37	NCBIFam	TIGR02218.1	phage conserved hypothetical protein BR0599	NA
UHGV-0105248_37	COG	COG5449	NA	NA
UHGV-0105248_37	Structural annotation	PF09931, PF09356, TIGR02218, COG5449	NA	NA
UHGV-0105248_38	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0105248_38	PHROG	phrog_329	minor tail protein	tail
UHGV-0105248_38	UniRef90	UniRef90_UPI0019595B98	hydrolase	NA
UHGV-0105248_38	eggNOG-mapper	457415.HMPREF1006_00477	cysteine-type peptidase activity	NA
UHGV-0105248_38	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0105248_38	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0105248_39	PHROG	phrog_1101	tail protein	tail
UHGV-0105248_39	UniRef90	UniRef90_UPI001957BA60	phage tail protein	NA
UHGV-0105248_39	eggNOG-mapper	457415.HMPREF1006_00478	cellulase activity	NA
UHGV-0105248_39	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0105248_39	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0105248_39	Structural annotation	PF13550, NF040662, COG4733	NA	NA
UHGV-0105248_40	PHROG	phrog_1084	NA	unknown function