UHGV-0105252

Genome information

Genome length 35,980 bps

CDS count 54

Completeness 71.23% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105252
vOTU ID	vOTU-038763
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_265822
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.81
Jumbo phage	No

Genome content
Genome length	35,980 bps
GC content	33.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	89.62%
Average CDS length	600.61 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105252_1	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0105252_1	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0105252_1	UniRef90	UniRef90_A0A351SFP5	DNA-directed DNA polymerase (Fragment)	NA
UHGV-0105252_1	eggNOG-mapper	413404.Rmag_0803	DNA polymerase III, alpha subunit	NA
UHGV-0105252_1	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0105252_1	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0105252_1	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0105252_1	Structural annotation	PF07733	NA	NA
UHGV-0105252_2	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0105252_2	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0105252_2	UniRef90	UniRef90_A0A355TT49	DNA-directed DNA polymerase (Fragment)	NA
UHGV-0105252_2	eggNOG-mapper	204536.SULAZ_0041	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-0105252_2	Pfam	PF02811	PHP domain	PHP
UHGV-0105252_2	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0105252_2	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0105252_2	Structural annotation	PF02811, PF07733, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0105252_4	Structural annotation	PF08804	NA	NA
UHGV-0105252_5	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0105252_5	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0105252_5	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0105252_5	eggNOG-mapper	1006581.GCW_02195	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0105252_5	PADLOC	drt-UG29	DRT	DRT
UHGV-0105252_5	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0105252_5	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0105252_5	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0105252_5	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0105252_7	Structural annotation	PF06003, MF_01077, NF037951, COG1862	NA	NA
UHGV-0105252_9	Structural annotation	PF07408, MF_01560, NF010187, COG4838	NA	NA
UHGV-0105252_10	PHROG	phrog_15863	NA	unknown function
UHGV-0105252_10	UniRef90	UniRef90_A0A417CWJ3	J domain-containing protein	NA
UHGV-0105252_10	eggNOG-mapper	1235790.C805_02351	DnaJ molecular chaperone homology domain	NA
UHGV-0105252_10	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0105252_11	Structural annotation	PF00210, NF007638, COG1528	NA	NA
UHGV-0105252_12	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0105252_13	PHROG	phrog_16490	NA	unknown function
UHGV-0105252_13	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0105252_16	UniRef90	UniRef90_A0A847BMY0	InlB B-repeat-containing protein	NA
UHGV-0105252_16	eggNOG-mapper	1410626.JHXB01000004_gene213	NA	NA
UHGV-0105252_16	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0105252_16	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0105252_16	COG	COG1579	Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain	NA
UHGV-0105252_16	Structural annotation	PF09479, PF00703, NF033188	NA	NA
UHGV-0105252_17	PHROG	phrog_1220	head protein	head and packaging
UHGV-0105252_17	UniRef90	UniRef90_A0A2T0B3H8	BppU_IgG domain-containing protein	NA
UHGV-0105252_17	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-0105252_17	Structural annotation	PF20747	NA	NA
UHGV-0105252_18	PHROG	phrog_538	minor tail protein	tail
UHGV-0105252_18	UniRef90	UniRef90_A0A843GTT7	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0105252_18	eggNOG-mapper	665956.HMPREF1032_00688	NA	NA
UHGV-0105252_18	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0105252_19	PHROG	phrog_36410	NA	unknown function
UHGV-0105252_19	UniRef90	UniRef90_A0A658JW57	Phage tail family protein	NA
UHGV-0105252_19	eggNOG-mapper	706433.HMPREF9430_01256	Phage tail protein	NA
UHGV-0105252_19	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0105252_20	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0105252_20	UniRef90	UniRef90_UPI000832CFF6	phage tail tape measure protein	NA
UHGV-0105252_20	eggNOG-mapper	1405498.SSIM_10965	Phage tail tape measure protein	NA
UHGV-0105252_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0105252_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0105252_20	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0105252_20	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0105252_21	PHROG	phrog_6541	NA	unknown function
UHGV-0105252_22	PHROG	phrog_6280	NA	unknown function
UHGV-0105252_22	UniRef90	UniRef90_UPI001AA892DF	esterase	NA
UHGV-0105252_22	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-0105252_23	PHROG	phrog_6686	tail tube protein	tail
UHGV-0105252_23	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0105252_23	eggNOG-mapper	748727.CLJU_c31250	NA	NA
UHGV-0105252_23	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0105252_24	PHROG	phrog_7585	NA	unknown function
UHGV-0105252_24	eggNOG-mapper	445335.CBN_3080	NA	NA
UHGV-0105252_24	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0105252_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0105252_25	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-0105252_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0105252_25	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0105252_26	PHROG	phrog_8435	NA	unknown function
UHGV-0105252_26	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0105252_27	PHROG	phrog_4020	NA	unknown function
UHGV-0105252_27	eggNOG-mapper	748727.CLJU_c31290	NA	NA
UHGV-0105252_28	Structural annotation	PF07498	NA	NA
UHGV-0105252_29	PHROG	phrog_29	major head protein	head and packaging
UHGV-0105252_29	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0105252_29	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0105252_29	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0105252_29	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0105252_30	PHROG	phrog_909	major head protein	head and packaging
UHGV-0105252_30	UniRef90	UniRef90_A0A098MDH2	NA	NA
UHGV-0105252_30	eggNOG-mapper	268407.PWYN_15680	NA	NA
UHGV-0105252_30	Structural annotation	PF02924	NA	NA
UHGV-0105252_31	eggNOG-mapper	1231057.AMGD01000018_gene3620	NA	NA
UHGV-0105252_31	Structural annotation	MF_02110	NA	NA
UHGV-0105252_32	PHROG	phrog_1315	NA	unknown function
UHGV-0105252_34	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0105252_34	UniRef90	UniRef90_A0A1G9U003	Phage Mu protein F like protein	NA
UHGV-0105252_34	eggNOG-mapper	748727.CLJU_c31360	Portal protein	NA
UHGV-0105252_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0105252_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0105252_35	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-0105252_35	eggNOG-mapper	1121342.AUCO01000012_gene1700	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0105252_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0105252_36	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0105252_36	PHROG	phrog_3393	endolysin	lysis
UHGV-0105252_36	UniRef90	UniRef90_A0A348ZBJ3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0105252_36	eggNOG-mapper	1232453.BAIF02000030_gene2529	Ami_2	NA
UHGV-0105252_36	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0105252_36	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0105252_36	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0105252_37	PHROG	phrog_443	holin	lysis
UHGV-0105252_37	UniRef90	UniRef90_UPI000E5CA950	holin	NA
UHGV-0105252_37	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0105252_37	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0105252_37	Structural annotation	PF16945	NA	NA
UHGV-0105252_38	PHROG	phrog_1009	NA	unknown function
UHGV-0105252_39	PHROG	phrog_13589	NA	unknown function
UHGV-0105252_39	eggNOG-mapper	411460.RUMTOR_01324	NA	NA
UHGV-0105252_40	PHROG	phrog_13589	NA	unknown function
UHGV-0105252_40	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0105252_41	PHROG	phrog_31538	NA	unknown function
UHGV-0105252_42	PHROG	phrog_15594	NA	unknown function
UHGV-0105252_42	eggNOG-mapper	862969.SCI_1223	NA	NA
UHGV-0105252_42	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0105252_44	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105252_44	UniRef90	UniRef90_UPI001AAAF7A6	HNH endonuclease	NA
UHGV-0105252_44	eggNOG-mapper	1229751.R9QM99_9CAUD	HNH endonuclease	NA
UHGV-0105252_44	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0105252_44	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0105252_44	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0105252_44	Structural annotation	PF13392, TIGR01453	NA	NA
UHGV-0105252_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105252_45	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0105252_45	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-0105252_45	eggNOG-mapper	536232.CLM_2529	Phage terminase, large subunit, PBSX family	NA
UHGV-0105252_45	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0105252_45	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0105252_45	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0105252_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105252_45	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0105252_50	PHROG	phrog_30343	NA	unknown function
UHGV-0105252_50	eggNOG-mapper	397291.C804_00939	NA	NA
UHGV-0105252_50	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-0105252_53	KOfam	K07128	NA	NA
UHGV-0105252_53	PHROG	phrog_11143	NA	unknown function
UHGV-0105252_53	UniRef90	UniRef90_A0A8F5I247	ABC transporter ATP-binding protein	NA
UHGV-0105252_53	eggNOG-mapper	173707.Q938L6_9CAUD	ATPase activity	NA
UHGV-0105252_53	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0105252_53	Structural annotation	MF_01005, NF007438, COG1136	NA	NA