UHGV-0105269

Genome information

Genome length 41,127 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105269
vOTU ID	vOTU-045510
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_256765
BioSample	SAMEA3708792
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.79
Jumbo phage	No

Genome content
Genome length	41,127 bps
GC content	56.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	94.68%
Average CDS length	673.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105269_1	PHROG	phrog_18805	NA	unknown function
UHGV-0105269_1	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0105269_1	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0105269_3	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0105269_3	PHROG	phrog_30034	NA	unknown function
UHGV-0105269_3	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-0105269_3	eggNOG-mapper	1235796.C815_00903	NA	NA
UHGV-0105269_3	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0105269_3	Structural annotation	PF14600	NA	NA
UHGV-0105269_4	PHROG	phrog_937	hemolysin	other
UHGV-0105269_4	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0105269_6	PHROG	phrog_13256	NA	unknown function
UHGV-0105269_6	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0105269_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0105269_7	PHROG	phrog_833	endolysin	lysis
UHGV-0105269_7	UniRef90	UniRef90_A0A1V5KCB7	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0105269_7	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0105269_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0105269_7	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0105269_7	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0105269_8	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-0105269_8	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA
UHGV-0105269_11	UniRef90	UniRef90_A0A8F1B662	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0105269_11	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0105269_12	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0105269_12	PHROG	phrog_95	integrase	integration and excision
UHGV-0105269_12	UniRef90	UniRef90_G4KP73	Putative site-specific recombinase	NA
UHGV-0105269_12	eggNOG-mapper	693746.OBV_21880	Resolvase, N terminal domain	NA
UHGV-0105269_12	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0105269_12	Pfam	PF07508	Recombinase	Recombinase
UHGV-0105269_12	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0105269_12	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0105269_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105269_13	Structural annotation	PF12844, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0105269_16	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0105269_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105269_16	UniRef90	UniRef90_E2ZIF0	DNA-binding helix-turn-helix protein	NA
UHGV-0105269_16	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0105269_16	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0105269_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105269_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105269_16	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0105269_25	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105269_25	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0105269_25	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0105269_25	Pfam	PF06356	NA	DUF1064
UHGV-0105269_25	Structural annotation	PF06356	NA	NA
UHGV-0105269_29	PHROG	phrog_3136	NA	unknown function
UHGV-0105269_29	UniRef90	UniRef90_A0A329TS47	ASCH domain-containing protein	NA
UHGV-0105269_29	Pfam	PF04266	ASCH domain	ASCH
UHGV-0105269_29	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0105269_29	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0105269_31	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0105269_31	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0105269_31	UniRef90	UniRef90_A0A3D3Y454	Adenylyl-sulfate reductase	NA
UHGV-0105269_31	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0105269_31	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0105269_31	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0105269_31	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0105269_31	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0105269_33	PHROG	phrog_5781	NA	unknown function
UHGV-0105269_33	UniRef90	UniRef90_A0A2V2GDQ1	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0105269_33	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0105269_33	Pfam	PF14359	NA	DUF4406
UHGV-0105269_33	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0105269_33	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0105269_34	PHROG	phrog_38832	NA	unknown function
UHGV-0105269_34	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0105269_34	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0105269_35	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105269_35	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0105269_35	eggNOG-mapper	1291050.JAGE01000001_gene468	endonuclease activity	NA
UHGV-0105269_35	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0105269_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0105269_35	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0105269_36	PHROG	phrog_31029	NA	unknown function
UHGV-0105269_39	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0105269_39	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0105269_39	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0105269_41	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0105269_41	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0105269_41	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0105269_41	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0105269_41	Structural annotation	PF16677	NA	NA
UHGV-0105269_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105269_42	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0105269_42	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0105269_42	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0105269_42	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0105269_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105269_42	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0105269_43	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0105269_43	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0105269_43	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0105269_44	eggNOG-mapper	537007.BLAHAN_05255	NA	NA
UHGV-0105269_45	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0105269_45	Structural annotation	PF00041, NF010681, COG3979	NA	NA
UHGV-0105269_46	Structural annotation	PF21683	NA	NA
UHGV-0105269_48	PHROG	phrog_156	portal protein	head and packaging
UHGV-0105269_48	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0105269_48	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0105269_49	PHROG	phrog_13908	NA	unknown function
UHGV-0105269_49	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0105269_50	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0105269_50	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0105269_50	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0105269_50	Pfam	PF13252	NA	DUF4043
UHGV-0105269_50	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0105269_50	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0105269_51	PHROG	phrog_15239	NA	unknown function
UHGV-0105269_52	PHROG	phrog_12105	NA	unknown function
UHGV-0105269_52	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0105269_53	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-0105269_53	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0105269_54	PHROG	phrog_22978	NA	unknown function
UHGV-0105269_54	eggNOG-mapper	1408437.JNJN01000039_gene389	heme binding	NA
UHGV-0105269_54	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0105269_54	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0105269_55	PHROG	phrog_33872	NA	unknown function
UHGV-0105269_55	eggNOG-mapper	693746.OBV_19740	NA	NA
UHGV-0105269_56	Structural annotation	PF18962, NF011773	NA	NA
UHGV-0105269_57	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0105269_57	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0105269_57	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0105269_57	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0105269_57	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0105269_57	Structural annotation	PF06903	NA	NA
UHGV-0105269_58	PHROG	phrog_35892	NA	unknown function
UHGV-0105269_58	UniRef90	UniRef90_A0A843FMD8	Leucine-rich repeat domain-containing protein	NA
UHGV-0105269_58	eggNOG-mapper	471875.RUMLAC_02240	dockerin type I repeat-containing domain protein	NA
UHGV-0105269_58	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0105269_58	COG	COG5492	NA	NA
UHGV-0105269_58	Structural annotation	PF14870, MF_01282, NF000022, COG4257	NA	NA