UHGV-0105271

Genome information

vOTU vOTU-019105

Genome length 62,223 bps

CDS count 95

Completeness 79.29% (medium-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105271
vOTU ID	vOTU-019105
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_256768
BioSample	SAMEA3708792
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.95
Jumbo phage	No

Genome content
Genome length	62,223 bps
GC content	38.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	95
CDS density	81.25%
Average CDS length	534.70 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105271_1	PHROG	phrog_4433	NA	unknown function
UHGV-0105271_1	eggNOG-mapper	619693.HMPREF6745_2502	DNA-templated transcription, initiation	NA
UHGV-0105271_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0105271_8	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0105271_8	UniRef90	UniRef90_UPI0018972D4E	ORF6C domain-containing protein	NA
UHGV-0105271_8	eggNOG-mapper	742733.HMPREF9469_01810	AntA/AntB antirepressor	NA
UHGV-0105271_8	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0105271_8	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0105271_8	COG	COG3617	Prophage antirepressor	NA
UHGV-0105271_9	UniRef90	UniRef90_A0A317UFQ3	XRE family transcriptional regulator	NA
UHGV-0105271_9	eggNOG-mapper	1536772.R70723_06535	addiction module antidote protein HigA	NA
UHGV-0105271_9	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0105271_9	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0105271_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0105271_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105271_10	UniRef90	UniRef90_A0A317UDF6	HTH cro/C1-type domain-containing protein	NA
UHGV-0105271_10	eggNOG-mapper	1304866.K413DRAFT_1181	addiction module antidote protein HigA	NA
UHGV-0105271_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105271_10	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0105271_10	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0105271_11	PHROG	phrog_3306	NA	unknown function
UHGV-0105271_11	UniRef90	UniRef90_UPI000CF972A3	NA	NA
UHGV-0105271_11	eggNOG-mapper	469616.FMAG_00734	NA	NA
UHGV-0105271_11	AcrCatalog	cluster_5078	NA	NA
UHGV-0105271_11	Pfam	PF19670	NA	DUF6173
UHGV-0105271_11	Structural annotation	PF19670	NA	NA
UHGV-0105271_16	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0105271_16	PHROG	phrog_8810	NA	unknown function
UHGV-0105271_16	UniRef90	UniRef90_A0A395X907	Stage 0 sporulation protein A homolog	NA
UHGV-0105271_16	eggNOG-mapper	1123009.AUID01000024_gene1449	NA	NA
UHGV-0105271_16	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0105271_16	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0105271_16	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0105271_16	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0105271_17	KOfam	K07273	acm; lysozyme	NA
UHGV-0105271_17	PHROG	phrog_6745	endolysin	lysis
UHGV-0105271_17	UniRef90	UniRef90_A0A173ZZ10	Lysozyme M1	NA
UHGV-0105271_17	eggNOG-mapper	457412.RSAG_00790	CHAP domain	NA
UHGV-0105271_17	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0105271_17	Pfam	PF05257	CHAP domain	CHAP
UHGV-0105271_17	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0105271_17	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0105271_17	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-0105271_18	PHROG	phrog_6616	tail protein	tail
UHGV-0105271_18	UniRef90	UniRef90_A0A1C5RZB4	Peptidase S74 domain-containing protein	NA
UHGV-0105271_18	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0105271_18	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0105271_18	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0105271_19	PHROG	phrog_1194	NA	unknown function
UHGV-0105271_19	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0105271_19	Pfam	PF20458	NA	DUF6711
UHGV-0105271_19	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0105271_20	PHROG	phrog_28918	NA	unknown function
UHGV-0105271_20	UniRef90	UniRef90_A0A1C5RYZ6	Phage-related protein	NA
UHGV-0105271_20	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0105271_20	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0105271_23	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0105271_23	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0105271_24	PHROG	phrog_1129	holin	lysis
UHGV-0105271_24	UniRef90	UniRef90_A0A2M8Z2Y7	Holin family Hol44 protein (Superfamily V)	NA
UHGV-0105271_24	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0105271_24	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0105271_24	Structural annotation	PF16079	NA	NA
UHGV-0105271_25	Structural annotation	PF05657	NA	NA
UHGV-0105271_26	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105271_26	UniRef90	UniRef90_Q4ZBR0	ORF019	NA
UHGV-0105271_26	eggNOG-mapper	320843.Q4ZBR0_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0105271_26	Structural annotation	PF17375	NA	NA
UHGV-0105271_27	UniRef90	UniRef90_UPI000AABEC73	LLM class flavin-dependent oxidoreductase	NA
UHGV-0105271_27	eggNOG-mapper	1499683.CCFF01000017_gene2117	NA	NA
UHGV-0105271_27	Structural annotation	PF20075, TIGR03070, COG3655	NA	NA
UHGV-0105271_28	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0105271_29	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0105271_31	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0105271_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0105271_31	UniRef90	UniRef90_UPI001D0BAB17	tyrosine-type recombinase/integrase	NA
UHGV-0105271_31	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0105271_31	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0105271_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105271_31	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0105271_31	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0105271_32	UniRef90	UniRef90_UPI001D0A24DA	SGNH/GDSL hydrolase family protein	NA
UHGV-0105271_32	eggNOG-mapper	1122931.AUAE01000019_gene984	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0105271_33	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0105271_33	Structural annotation	PF10651, COG5513	NA	NA
UHGV-0105271_34	PHROG	phrog_19695	NA	unknown function
UHGV-0105271_34	eggNOG-mapper	1232452.BAIB02000007_gene1611	NA	NA
UHGV-0105271_34	Structural annotation	PF19714	NA	NA
UHGV-0105271_35	eggNOG-mapper	742733.HMPREF9469_01803	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0105271_35	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0105271_37	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0105271_38	PHROG	phrog_1233	NA	unknown function
UHGV-0105271_38	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0105271_38	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0105271_39	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0105271_40	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105271_40	UniRef90	UniRef90_A0A0H3N242	Phage-related protein	NA
UHGV-0105271_40	eggNOG-mapper	86416.Clopa_4295	NA	NA
UHGV-0105271_40	Structural annotation	PF07768	NA	NA
UHGV-0105271_41	PHROG	phrog_3180	Arc-like repressor	transcription regulation
UHGV-0105271_41	UniRef90	UniRef90_D7GWE6	RHH_3 domain-containing protein	NA
UHGV-0105271_41	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0105271_41	Structural annotation	PF12651, NF041793, COG3905	NA	NA
UHGV-0105271_42	PHROG	phrog_16490	NA	unknown function
UHGV-0105271_42	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0105271_44	PHROG	phrog_21718	NA	unknown function
UHGV-0105271_44	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-0105271_45	UniRef90	UniRef90_A0A317UDM1	Sigma70_r4 domain-containing protein	NA
UHGV-0105271_45	eggNOG-mapper	476272.RUMHYD_01951	NA	NA
UHGV-0105271_45	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0105271_45	Structural annotation	PF04545, MF_00674, NF001067, COG1342	NA	NA
UHGV-0105271_46	PHROG	phrog_937	hemolysin	other
UHGV-0105271_47	eggNOG-mapper	476272.RUMHYD_01948	NA	NA
UHGV-0105271_48	PHROG	phrog_29	major head protein	head and packaging
UHGV-0105271_48	UniRef90	UniRef90_R0C0Z5	S-l_SbsC_C domain-containing protein	NA
UHGV-0105271_48	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0105271_48	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0105271_48	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0105271_49	PHROG	phrog_909	major head protein	head and packaging
UHGV-0105271_49	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0105271_49	Structural annotation	PF02924	NA	NA
UHGV-0105271_50	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-0105271_50	eggNOG-mapper	1298920.KI911353_gene2662	NA	NA
UHGV-0105271_50	Structural annotation	PF14265	NA	NA
UHGV-0105271_52	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0105271_54	PHROG	phrog_64	portal protein	head and packaging
UHGV-0105271_54	UniRef90	UniRef90_A0A412EMP0	Phage portal protein	NA
UHGV-0105271_54	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0105271_54	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0105271_54	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0105271_55	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0105271_55	UniRef90	UniRef90_A0A373NRA4	NA	NA
UHGV-0105271_55	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0105271_55	Pfam	PF07374	NA	DUF1492
UHGV-0105271_55	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0105271_55	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0105271_56	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105271_56	eggNOG-mapper	1141106.CAIB01000133_gene1117	HNH endonuclease	NA
UHGV-0105271_56	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0105271_57	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0105271_57	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0105271_57	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0105271_57	COG	COG5410	NA	NA
UHGV-0105271_57	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0105271_58	PHROG	phrog_12728	NA	unknown function
UHGV-0105271_58	UniRef90	UniRef90_A0A6H0X686	Putative signal peptide-containing lipoprotein	NA
UHGV-0105271_58	eggNOG-mapper	742765.HMPREF9457_02125	NA	NA
UHGV-0105271_68	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105271_68	UniRef90	UniRef90_A0A1I7HBC9	DNA binding domain-containing protein, excisionase family	NA
UHGV-0105271_68	eggNOG-mapper	537874.B3GVX7_9CAUD	HNH endonuclease	NA
UHGV-0105271_68	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0105271_68	Pfam	PF08279	HTH domain	HTH_11
UHGV-0105271_70	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0105271_73	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105271_73	UniRef90	UniRef90_G9B1F6	Gp55	NA
UHGV-0105271_73	eggNOG-mapper	764595.G9B1F6_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0105271_73	Structural annotation	PF17375	NA	NA
UHGV-0105271_75	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0105271_75	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0105271_76	eggNOG-mapper	476272.RUMHYD_01907	NA	NA
UHGV-0105271_78	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0105271_79	UniRef90	UniRef90_A0A6N7UU43	NA	NA
UHGV-0105271_79	Structural annotation	PF19807, NF010256, COG4453	NA	NA
UHGV-0105271_86	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0105271_86	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0105271_86	UniRef90	UniRef90_A0A1C5S3Q1	DNA replication protein dnaC	NA
UHGV-0105271_86	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0105271_86	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0105271_86	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0105271_86	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0105271_87	PHROG	phrog_11769	NA	unknown function
UHGV-0105271_87	UniRef90	UniRef90_A0A317UCF5	Phage_rep_org_N domain-containing protein	NA
UHGV-0105271_87	eggNOG-mapper	1414720.CBYM010000001_gene675	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0105271_87	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0105271_87	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0105271_87	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-0105271_90	eggNOG-mapper	1415774.U728_767	NA	NA
UHGV-0105271_91	eggNOG-mapper	476272.RUMHYD_03348	NA	NA
UHGV-0105271_93	KOfam	K07496	K07496; putative transposase	NA
UHGV-0105271_93	PHROG	phrog_506	transposase	integration and excision
UHGV-0105271_93	UniRef90	UniRef90_A0A416PK34	Transposase	NA
UHGV-0105271_93	eggNOG-mapper	457412.RSAG_01324	TIGRFAM transposase, IS605 OrfB family	NA
UHGV-0105271_93	PADLOC	Cas14u	CAS-V-F; effector__SPE	CRISPR-CAS
UHGV-0105271_93	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0105271_93	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0105271_93	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0105271_93	COG	COG0675	Transposase	NA
UHGV-0105271_93	Structural annotation	PF01385, MF_00034, NF038281, COG0675	NA	NA
UHGV-0105271_94	KOfam	K07491	rayT; REP-associated tyrosine transposase	NA
UHGV-0105271_94	PHROG	phrog_2577	transposase	integration and excision
UHGV-0105271_94	UniRef90	UniRef90_A0A373V5T0	IS200/IS605 family transposase	NA
UHGV-0105271_94	eggNOG-mapper	457412.RSAG_01373	Transposase IS200 like	NA
UHGV-0105271_94	Pfam	PF01797	Transposase IS200 like	Y1_Tnp
UHGV-0105271_94	NCBIFam	NF033573.1	IS200/IS605 family transposase	NA
UHGV-0105271_94	COG	COG1943	REP element-mobilizing transposase RayT	NA
UHGV-0105271_94	Structural annotation	PF01797, MF_00360, NF033573, COG1943	NA	NA