UHGV-0105272

Genome information

Genome length 56,269 bps

CDS count 99

Completeness 97.61% (high-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105272
vOTU ID	vOTU-014568
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_256771
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.61% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.37
Jumbo phage	No

Genome content
Genome length	56,269 bps
GC content	49.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	99
CDS density	84.00%
Average CDS length	479.76 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105272_1	eggNOG-mapper	718252.FP2_14370	domain, Protein	NA
UHGV-0105272_1	COG	COG5492	NA	NA
UHGV-0105272_3	UniRef90	UniRef90_F8J1C9	Structural protein	NA
UHGV-0105272_3	eggNOG-mapper	1235802.C823_01049	NA	NA
UHGV-0105272_3	Structural annotation	PF19789	NA	NA
UHGV-0105272_4	Structural annotation	PF07238	NA	NA
UHGV-0105272_5	PHROG	phrog_28526	NA	unknown function
UHGV-0105272_5	UniRef90	UniRef90_A0A2A7AIE2	Antitoxin	NA
UHGV-0105272_5	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0105272_5	Pfam	PF04255	NA	DUF433
UHGV-0105272_6	KOfam	K07273	acm; lysozyme	NA
UHGV-0105272_6	PHROG	phrog_291	endolysin	lysis
UHGV-0105272_6	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0105272_6	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0105272_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0105272_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0105272_6	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0105272_8	PHROG	phrog_15303	NA	unknown function
UHGV-0105272_9	PHROG	phrog_1454	NA	unknown function
UHGV-0105272_9	UniRef90	UniRef90_A0A0D1WCB4	Phosphomannomutase	NA
UHGV-0105272_9	eggNOG-mapper	742740.HMPREF9474_04325	NA	NA
UHGV-0105272_11	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0105272_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105272_11	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA
UHGV-0105272_14	PHROG	phrog_16490	NA	unknown function
UHGV-0105272_14	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0105272_15	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0105272_16	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0105272_20	Structural annotation	PF07878	NA	NA
UHGV-0105272_22	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0105272_22	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0105272_22	UniRef90	UniRef90_A0A1G6FF50	Chromosome partitioning protein	NA
UHGV-0105272_22	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0105272_22	Pfam	PF13614	AAA domain	AAA_31
UHGV-0105272_22	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0105272_22	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0105272_23	Pfam	PF04448	NA	DUF551
UHGV-0105272_23	Structural annotation	NF041588	NA	NA
UHGV-0105272_24	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0105272_24	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0105272_24	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0105272_24	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0105272_24	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0105272_24	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0105272_24	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0105272_25	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0105272_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105272_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105272_25	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0105272_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105272_30	UniRef90	UniRef90_A0A358M3D8	HTH cro/C1-type domain-containing protein	NA
UHGV-0105272_30	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0105272_30	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0105272_30	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0105272_31	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0105272_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105272_31	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0105272_32	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0105272_32	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0105272_32	eggNOG-mapper	947981.E9LUT0_9CAUD	DNA binding	NA
UHGV-0105272_32	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0105272_32	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0105272_32	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0105272_32	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0105272_34	Structural annotation	TIGR03826	NA	NA
UHGV-0105272_35	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0105272_35	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0105272_37	Structural annotation	PF14143	NA	NA
UHGV-0105272_38	eggNOG-mapper	1410633.JHWR01000008_gene1673	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0105272_38	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0105272_38	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0105272_38	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0105272_40	eggNOG-mapper	857293.CAAU_1555	Probable zinc-ribbon domain	NA
UHGV-0105272_40	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0105272_40	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0105272_40	Structural annotation	PF13451	NA	NA
UHGV-0105272_41	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0105272_41	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0105272_41	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0105272_41	Pfam	PF04404	ERF superfamily	ERF
UHGV-0105272_41	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0105272_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0105272_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0105272_42	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0105272_42	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0105272_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105272_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0105272_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105272_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0105272_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0105272_43	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105272_43	UniRef90	UniRef90_A0A8D4LFG4	HNH endonuclease	NA
UHGV-0105272_43	eggNOG-mapper	945021.TEH_18310	NUMOD4 motif	NA
UHGV-0105272_43	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0105272_43	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0105272_43	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0105272_43	Structural annotation	PF13392, PF20987	NA	NA
UHGV-0105272_44	PHROG	phrog_35094	NA	unknown function
UHGV-0105272_44	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0105272_46	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105272_46	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0105272_46	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0105272_46	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0105272_49	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0105272_51	Structural annotation	MF_00085, TIGR00037, COG0231	NA	NA
UHGV-0105272_54	Pfam	PF04448	NA	DUF551
UHGV-0105272_54	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0105272_55	Structural annotation	PF16677	NA	NA
UHGV-0105272_59	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0105272_59	PHROG	phrog_11947	NA	unknown function
UHGV-0105272_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105272_64	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0105272_64	eggNOG-mapper	269482.Bcep1808_1151	NA	NA
UHGV-0105272_64	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0105272_64	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0105272_64	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0105272_64	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0105272_65	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0105272_65	Pfam	PF19808	NA	DUF6291
UHGV-0105272_65	Structural annotation	PF19808	NA	NA
UHGV-0105272_66	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0105272_66	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0105272_66	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0105272_66	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0105272_66	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0105272_66	COG	COG0305	Replicative DNA helicase	NA
UHGV-0105272_66	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0105272_67	KOfam	K03744	lemA; LemA protein	NA
UHGV-0105272_67	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0105272_67	UniRef90	UniRef90_A0A6N9P3N6	LemA family protein	NA
UHGV-0105272_67	eggNOG-mapper	657322.FPR_23420	LemA family	NA
UHGV-0105272_67	Pfam	PF04011	LemA family	LemA
UHGV-0105272_67	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0105272_67	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0105272_68	PHROG	phrog_3886	NA	unknown function
UHGV-0105272_68	eggNOG-mapper	742735.HMPREF9467_00880	NA	NA
UHGV-0105272_69	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0105272_69	UniRef90	UniRef90_B0NH38	Replication initiator protein A domain protein	NA
UHGV-0105272_69	eggNOG-mapper	411468.CLOSCI_02792	Replication initiator protein A (RepA) N-terminus	NA
UHGV-0105272_69	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0105272_69	COG	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	NA
UHGV-0105272_69	Structural annotation	PF06970, MF_01177, NF040642, COG5625	NA	NA
UHGV-0105272_71	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105272_71	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0105272_76	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0105272_76	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0105272_76	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-0105272_77	UniRef90	UniRef90_A0A417DZ16	HTH cro/C1-type domain-containing protein	NA
UHGV-0105272_77	Pfam	PF13744	Helix-turn-helix domain	HTH_37
UHGV-0105272_77	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0105272_78	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0105272_78	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0105272_78	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0105272_78	eggNOG-mapper	1410633.JHWR01000012_gene95	Resolvase, N terminal domain	NA
UHGV-0105272_78	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0105272_78	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0105272_78	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0105272_81	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0105272_81	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0105272_81	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0105272_81	COG	COG5410	NA	NA
UHGV-0105272_81	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0105272_83	PHROG	phrog_64	portal protein	head and packaging
UHGV-0105272_83	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0105272_83	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0105272_83	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0105272_83	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0105272_86	PHROG	phrog_29	major head protein	head and packaging
UHGV-0105272_86	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0105272_86	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0105272_86	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0105272_86	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0105272_87	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0105272_87	Structural annotation	TIGR01560	NA	NA
UHGV-0105272_88	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0105272_90	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0105272_91	PHROG	phrog_158	major tail protein	tail
UHGV-0105272_91	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0105272_91	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0105272_91	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0105272_92	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-0105272_92	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0105272_92	Pfam	PF16478	NA	DUF5055
UHGV-0105272_92	Structural annotation	PF16478	NA	NA
UHGV-0105272_93	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0105272_94	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0105272_94	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0105272_94	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0105272_95	PHROG	phrog_1194	NA	unknown function
UHGV-0105272_95	Pfam	PF20458	NA	DUF6711
UHGV-0105272_95	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0105272_96	PHROG	phrog_13879	NA	unknown function
UHGV-0105272_96	eggNOG-mapper	1007103.AFHW01000096_gene3259	NA	NA
UHGV-0105272_96	Pfam	PF19789	NA	DUF6273
UHGV-0105272_96	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0105272_97	PHROG	phrog_18725	NA	unknown function
UHGV-0105272_97	UniRef90	UniRef90_UPI001D0EF571	Ig-like domain-containing protein	NA
UHGV-0105272_97	eggNOG-mapper	718252.FP2_14370	domain, Protein	NA
UHGV-0105272_97	COG	COG5492	NA	NA
UHGV-0105272_97	Structural annotation	PF18560, NF041539	NA	NA
UHGV-0105272_98	PHROG	phrog_263	holin	lysis
UHGV-0105272_98	UniRef90	UniRef90_A0A329THP5	Holin	NA
UHGV-0105272_98	eggNOG-mapper	718252.FP2_14360	SPP1 phage holin	NA
UHGV-0105272_98	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0105272_98	Structural annotation	PF04688, TIGR01592	NA	NA