UHGV-0105296

Genome information

Genome length 50,436 bps

CDS count 48

Completeness 80.70% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105296
vOTU ID	vOTU-042248
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_244854
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.42
Jumbo phage	No

Genome content
Genome length	50,436 bps
GC content	50.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.68%
Average CDS length	977.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105296_1	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-0105296_1	UniRef90	UniRef90_UPI0014728F49	transglycosylase SLT domain-containing protein	NA
UHGV-0105296_1	eggNOG-mapper	1291050.JAGE01000001_gene1093	NA	NA
UHGV-0105296_1	PADLOC	DrmD_00004	DrmD	DISARM
UHGV-0105296_1	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0105296_1	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0105296_1	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0105296_1	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0105296_3	UniRef90	UniRef90_UPI00047F33D6	Hint domain-containing protein	NA
UHGV-0105296_3	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0105296_3	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0105296_3	Structural annotation	PF01079, NF038136	NA	NA
UHGV-0105296_4	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0105296_5	eggNOG-mapper	883156.HMPREF9282_00569	NA	NA
UHGV-0105296_5	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0105296_6	UniRef90	UniRef90_S7HTA2	TarH domain-containing protein	NA
UHGV-0105296_7	PHROG	phrog_34863	NA	unknown function
UHGV-0105296_7	UniRef90	UniRef90_UPI001D017339	chitosanase	NA
UHGV-0105296_7	eggNOG-mapper	1273103.NM10_00929	LysM domain	NA
UHGV-0105296_7	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-0105296_7	COG	COG1388	LysM repeat	NA
UHGV-0105296_7	Structural annotation	PF21277	NA	NA
UHGV-0105296_8	PHROG	phrog_28789	NA	unknown function
UHGV-0105296_8	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-0105296_8	eggNOG-mapper	1273103.NM10_00934	NA	NA
UHGV-0105296_10	KOfam	K14059	int; integrase	NA
UHGV-0105296_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0105296_10	UniRef90	UniRef90_UPI0004143D65	tyrosine-type recombinase/integrase	NA
UHGV-0105296_10	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-0105296_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105296_10	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0105296_10	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0105296_12	PHROG	phrog_6465	tail protein	tail
UHGV-0105296_12	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0105296_12	eggNOG-mapper	1054968.G0X4V0_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0105296_13	eggNOG-mapper	1232428.CAVO010000067_gene418	NA	NA
UHGV-0105296_13	Structural annotation	PF14301	NA	NA
UHGV-0105296_16	PHROG	phrog_5717	tail protein	tail
UHGV-0105296_16	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-0105296_16	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-0105296_16	COG	COG4675	Phage tail collar domain	NA
UHGV-0105296_17	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-0105296_17	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0105296_18	PHROG	phrog_5417	NA	unknown function
UHGV-0105296_18	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-0105296_18	eggNOG-mapper	1589747.A0A0B5A4F6_9CAUD	NA	NA
UHGV-0105296_18	Structural annotation	PF12571	NA	NA
UHGV-0105296_19	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-0105296_19	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0105296_19	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-0105296_20	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-0105296_20	Structural annotation	PF20387	NA	NA
UHGV-0105296_21	Structural annotation	PF20387	NA	NA
UHGV-0105296_23	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0105296_23	UniRef90	UniRef90_UPI000413677B	NA	NA
UHGV-0105296_23	eggNOG-mapper	1232428.CAVO010000067_gene423	NA	NA
UHGV-0105296_23	Pfam	PF17236	NA	DUF5309
UHGV-0105296_23	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-0105296_24	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-0105296_26	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0105296_26	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-0105296_26	eggNOG-mapper	1232428.CAVO010000067_gene425	Membrane	NA
UHGV-0105296_26	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0105296_26	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0105296_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105296_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0105296_27	UniRef90	UniRef90_A0A1F8V9T6	Terminase_3 domain-containing protein	NA
UHGV-0105296_27	eggNOG-mapper	1232428.CAVO010000067_gene427	DNA packaging	NA
UHGV-0105296_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105296_27	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0105296_28	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0105296_28	UniRef90	UniRef90_A0A2S0M9J8	Transposase	NA
UHGV-0105296_28	eggNOG-mapper	374526.A5GYP7_9CAUD	endonuclease activity	NA
UHGV-0105296_28	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0105296_28	Structural annotation	PF07141	NA	NA
UHGV-0105296_29	Structural annotation	PF07867	NA	NA
UHGV-0105296_30	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0105296_31	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0105296_31	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0105296_32	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0105296_32	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0105296_32	UniRef90	UniRef90_UPI00197DB886	dCMP deaminase family protein	NA
UHGV-0105296_32	eggNOG-mapper	693746.OBV_35660	MafB19-like deaminase	NA
UHGV-0105296_32	PADLOC	dCTPase	NA	NA
UHGV-0105296_32	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0105296_32	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0105296_32	Structural annotation	PF00383, TIGR02571, COG2131	NA	NA
UHGV-0105296_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0105296_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105296_37	UniRef90	UniRef90_A0A2S0M9F1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0105296_37	eggNOG-mapper	1273103.NM10_01114	Endodeoxyribonuclease RusA	NA
UHGV-0105296_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0105296_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0105296_38	PHROG	phrog_4943	NA	unknown function
UHGV-0105296_38	UniRef90	UniRef90_A0A413R0M9	NA	NA
UHGV-0105296_38	Pfam	PF11753	NA	DUF3310
UHGV-0105296_38	Structural annotation	PF11753, PF11717	NA	NA
UHGV-0105296_39	UniRef90	UniRef90_UPI001474421D	NA	NA
UHGV-0105296_39	eggNOG-mapper	1273103.NM10_02357	Protein conserved in bacteria	NA
UHGV-0105296_39	Pfam	PF07866	NA	DUF1653
UHGV-0105296_39	COG	COG4728	NA	NA
UHGV-0105296_39	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0105296_40	Structural annotation	PF02482, TIGR00741, COG1544	NA	NA
UHGV-0105296_41	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0105296_41	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0105296_41	UniRef90	UniRef90_A0A2S0MAB6	dUTP diphosphatase	NA
UHGV-0105296_41	eggNOG-mapper	706434.HMPREF9429_00398	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0105296_41	Pfam	PF00692	dUTPase	dUTPase
UHGV-0105296_41	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0105296_41	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0105296_42	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0105296_42	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0105296_42	UniRef90	UniRef90_A0A2S0M9B9	HU family DNA-binding protein	NA
UHGV-0105296_42	eggNOG-mapper	177439.DP1422	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-0105296_42	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0105296_42	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0105296_42	Structural annotation	PF00216, MF_00381, NF007945, COG0776	NA	NA
UHGV-0105296_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0105296_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0105296_43	UniRef90	UniRef90_A0A2S0M9E2	Single-stranded DNA-binding protein	NA
UHGV-0105296_43	eggNOG-mapper	1232428.CAVO010000067_gene437	single-stranded DNA binding	NA
UHGV-0105296_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105296_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0105296_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105296_43	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0105296_44	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0105296_44	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0105296_45	PHROG	phrog_37395	NA	unknown function
UHGV-0105296_47	Structural annotation	PF11417	NA	NA
UHGV-0105296_48	PHROG	phrog_15768	NA	unknown function
UHGV-0105296_48	eggNOG-mapper	1232428.CAVO010000067_gene439	NA	NA