UHGV-0105332

Genome information

Genome length 35,967 bps

CDS count 64

Completeness 92.77% (high-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105332
vOTU ID	vOTU-060837
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_256170
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.77% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	77.75
Jumbo phage	No

Genome content
Genome length	35,967 bps
GC content	43.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	92.62%
Average CDS length	522.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105332_1	KOfam	K14059	int; integrase	NA
UHGV-0105332_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0105332_1	UniRef90	UniRef90_A0A0R1NRN4	Tyr recombinase domain-containing protein	NA
UHGV-0105332_1	eggNOG-mapper	944562.HMPREF9102_0383	Belongs to the 'phage' integrase family	NA
UHGV-0105332_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0105332_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0105332_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105332_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0105332_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0105332_2	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0105332_2	UniRef90	UniRef90_UPI001E4C661F	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0105332_2	eggNOG-mapper	1605.Lani381_0418	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0105332_2	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0105332_2	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0105332_3	eggNOG-mapper	1605.Lani381_0418	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0105332_3	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0105332_4	PHROG	phrog_5610	NA	unknown function
UHGV-0105332_4	UniRef90	UniRef90_A0A7H9CRC0	NA	NA
UHGV-0105332_4	eggNOG-mapper	349123.Lreu23DRAFT_4242	NA	NA
UHGV-0105332_4	Pfam	PF16729	NA	DUF5067
UHGV-0105332_4	Structural annotation	PF16729, TIGR03780, COG2967	NA	NA
UHGV-0105332_5	PHROG	phrog_87	metallo-protease	other
UHGV-0105332_5	UniRef90	UniRef90_A0A7H9CPT6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0105332_5	eggNOG-mapper	1201292.DR75_1543	IrrE N-terminal-like domain	NA
UHGV-0105332_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0105332_5	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-0105332_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0105332_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105332_6	UniRef90	UniRef90_A0A1L7GTS1	HTH cro/C1-type domain-containing protein	NA
UHGV-0105332_6	eggNOG-mapper	557436.Lreu_0801	Helix-turn-helix domain	NA
UHGV-0105332_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0105332_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105332_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105332_6	Structural annotation	PF12844, MF_00535, NF041575, COG1396	NA	NA
UHGV-0105332_7	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0105332_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105332_7	UniRef90	UniRef90_A0A1L7GTP0	HTH cro/C1-type domain-containing protein	NA
UHGV-0105332_7	eggNOG-mapper	1260356.D920_01619	Protein conserved in bacteria	NA
UHGV-0105332_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0105332_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105332_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0105332_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0105332_8	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0105332_8	UniRef90	UniRef90_A0A7H9CVF2	ORF6N domain-containing protein	NA
UHGV-0105332_8	eggNOG-mapper	349123.Lreu23DRAFT_4237	ORF6N domain	NA
UHGV-0105332_8	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0105332_8	COG	COG1737	DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains	NA
UHGV-0105332_8	Structural annotation	PF10543, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0105332_10	PHROG	phrog_8594	NA	unknown function
UHGV-0105332_10	eggNOG-mapper	97137.C821_00651	NA	NA
UHGV-0105332_11	PHROG	phrog_823	NA	unknown function
UHGV-0105332_11	UniRef90	UniRef90_A0A7H9CR84	NA	NA
UHGV-0105332_11	eggNOG-mapper	1293597.BN147_08445	NA	NA
UHGV-0105332_11	Pfam	PF05595	NA	DUF771
UHGV-0105332_11	Structural annotation	PF05595, COG4707	NA	NA
UHGV-0105332_15	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0105332_15	UniRef90	UniRef90_A0A7H9CRB0	Siphovirus Gp157 family protein	NA
UHGV-0105332_15	eggNOG-mapper	500637.PROVRUST_06763	Siphovirus Gp157	NA
UHGV-0105332_15	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0105332_15	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0105332_16	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0105332_16	UniRef90	UniRef90_A0A7H9CQ11	NA	NA
UHGV-0105332_16	eggNOG-mapper	363555.Q20DG2_9CAUD	NA	NA
UHGV-0105332_16	Pfam	PF06378	NA	DUF1071
UHGV-0105332_16	Structural annotation	PF06378, TIGR00607, COG4712	NA	NA
UHGV-0105332_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0105332_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0105332_17	UniRef90	UniRef90_A0A7H9CM98	Single-stranded DNA-binding protein	NA
UHGV-0105332_17	eggNOG-mapper	35344.A0A097PAQ3_BPT12	single-stranded DNA binding	NA
UHGV-0105332_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105332_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0105332_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0105332_17	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0105332_18	PHROG	phrog_398	NA	unknown function
UHGV-0105332_18	UniRef90	UniRef90_UPI0006527DDD	putative HNHc nuclease	NA
UHGV-0105332_18	eggNOG-mapper	1203076.CAKF01000007_gene281	Putative HNHc nuclease	NA
UHGV-0105332_18	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0105332_18	Structural annotation	PF16784	NA	NA
UHGV-0105332_21	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0105332_21	UniRef90	UniRef90_A0A1H0C647	Phg_2220_C domain-containing protein	NA
UHGV-0105332_21	eggNOG-mapper	396513.SCA_0478	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0105332_21	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0105332_21	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0105332_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0105332_21	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0105332_22	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0105332_22	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0105332_22	UniRef90	UniRef90_A0A0R1P1H3	AAA domain-containing protein	NA
UHGV-0105332_22	eggNOG-mapper	1423724.BAMM01000012_gene1381	IstB-like ATP binding protein	NA
UHGV-0105332_22	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0105332_22	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0105332_22	Structural annotation	PF01695, MF_01509, NF005304, COG1484	NA	NA
UHGV-0105332_23	Structural annotation	PF00684	NA	NA
UHGV-0105332_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0105332_24	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105332_24	UniRef90	UniRef90_A0A1H0C6I9	Holliday junction resolvase RusA (Prophage-encoded endonuclease)	NA
UHGV-0105332_24	eggNOG-mapper	349123.Lreu23DRAFT_3099	Endodeoxyribonuclease RusA	NA
UHGV-0105332_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0105332_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0105332_24	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0105332_25	Structural annotation	PF19678, COG2388	NA	NA
UHGV-0105332_27	Structural annotation	PF17399	NA	NA
UHGV-0105332_29	UniRef90	UniRef90_D2KRE7	Methyl-accepting chemotaxis sensory transducer	NA
UHGV-0105332_30	UniRef90	UniRef90_A0A508YP97	NA	NA
UHGV-0105332_30	Pfam	PF08861	NA	DUF1828
UHGV-0105332_30	Structural annotation	PF08861	NA	NA
UHGV-0105332_31	Structural annotation	MF_00273	NA	NA
UHGV-0105332_32	PHROG	phrog_37878	NA	unknown function
UHGV-0105332_39	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0105332_39	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0105332_41	PHROG	phrog_7344	terminase small subunit	head and packaging
UHGV-0105332_41	UniRef90	UniRef90_A0A0R1P1M1	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0105332_41	eggNOG-mapper	1423755.BAML01000009_gene780	NA	NA
UHGV-0105332_41	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0105332_41	Structural annotation	PF13022	NA	NA
UHGV-0105332_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105332_42	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0105332_42	UniRef90	UniRef90_A0A0R1P1I8	Phage terminase, large subunit, PBSX family	NA
UHGV-0105332_42	eggNOG-mapper	908339.HMPREF9265_1614	Terminase-like family	NA
UHGV-0105332_42	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0105332_42	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0105332_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0105332_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105332_42	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0105332_43	PHROG	phrog_64	portal protein	head and packaging
UHGV-0105332_43	UniRef90	UniRef90_A0A0D4CJA9	Portal protein	NA
UHGV-0105332_43	eggNOG-mapper	908339.HMPREF9265_1613	Phage portal protein	NA
UHGV-0105332_43	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0105332_43	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0105332_43	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0105332_44	PHROG	phrog_64	portal protein	head and packaging
UHGV-0105332_44	UniRef90	UniRef90_A0A7X2STG5	Phage portal protein (Fragment)	NA
UHGV-0105332_44	eggNOG-mapper	908339.HMPREF9265_1613	Phage portal protein	NA
UHGV-0105332_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0105332_45	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0105332_45	UniRef90	UniRef90_UPI001F0474D1	minor capsid protein	NA
UHGV-0105332_45	eggNOG-mapper	349123.Lreu23DRAFT_4211	Phage Mu protein F like protein	NA
UHGV-0105332_45	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0105332_45	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0105332_45	COG	COG2369	NA	NA
UHGV-0105332_45	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0105332_46	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0105332_46	UniRef90	UniRef90_A0A7H9CSL4	NA	NA
UHGV-0105332_46	eggNOG-mapper	908339.HMPREF9265_0944	NA	NA
UHGV-0105332_46	Pfam	PF14265	NA	DUF4355
UHGV-0105332_46	Structural annotation	PF14265	NA	NA
UHGV-0105332_47	PHROG	phrog_544	major head protein	head and packaging
UHGV-0105332_47	UniRef90	UniRef90_A0A099YEW5	Head protein	NA
UHGV-0105332_47	eggNOG-mapper	1329250.WOSG25_061410	NA	NA
UHGV-0105332_47	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0105332_47	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0105332_48	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0105332_48	UniRef90	UniRef90_A0A0D4CJB4	NA	NA
UHGV-0105332_48	eggNOG-mapper	908339.HMPREF9265_0942	Phage gp6-like head-tail connector protein	NA
UHGV-0105332_48	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0105332_48	Structural annotation	PF05135	NA	NA
UHGV-0105332_49	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0105332_49	UniRef90	UniRef90_Q037E1	NA	NA
UHGV-0105332_49	eggNOG-mapper	908339.HMPREF9265_0941	NA	NA
UHGV-0105332_49	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0105332_50	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0105332_50	UniRef90	UniRef90_A0A0D4CJU8	NA	NA
UHGV-0105332_50	eggNOG-mapper	1567453.A0A0A1ENQ3_9CAUD	exonuclease activity	NA
UHGV-0105332_50	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0105332_50	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0105332_51	PHROG	phrog_176	tail terminator	connector
UHGV-0105332_51	UniRef90	UniRef90_A0A0D4CJ16	Phage major structural protein	NA
UHGV-0105332_51	eggNOG-mapper	908339.HMPREF9265_0939	NA	NA
UHGV-0105332_51	Structural annotation	PF11367	NA	NA
UHGV-0105332_52	PHROG	phrog_238	major tail protein	tail
UHGV-0105332_52	UniRef90	UniRef90_A0A0D4CJ52	Phage tail protein	NA
UHGV-0105332_52	eggNOG-mapper	908339.HMPREF9265_0938	Phage tail tube protein	NA
UHGV-0105332_52	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0105332_52	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0105332_53	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0105332_53	UniRef90	UniRef90_A0A1H0C9M6	Phage tail assembly chaperone protein, TAC	NA
UHGV-0105332_53	eggNOG-mapper	908339.HMPREF9265_0937	Phage tail assembly chaperone protein, TAC	NA
UHGV-0105332_53	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0105332_53	Structural annotation	PF12363	NA	NA
UHGV-0105332_54	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0105332_54	UniRef90	UniRef90_A0A0F4LEH9	NA	NA
UHGV-0105332_54	eggNOG-mapper	543734.LCABL_13390	NA	NA
UHGV-0105332_55	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0105332_55	UniRef90	UniRef90_A0A7H9CM74	Tape measure protein	NA
UHGV-0105332_55	eggNOG-mapper	349123.Lreu23DRAFT_4200	Phage tail tape measure protein	NA
UHGV-0105332_55	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0105332_55	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0105332_55	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0105332_55	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0105332_56	eggNOG-mapper	349123.Lreu23DRAFT_4199	phage tail	NA
UHGV-0105332_56	COG	COG4722	Phage-related protein YomH	NA
UHGV-0105332_57	UniRef90	UniRef90_A0A0D4CJR0	NA	NA
UHGV-0105332_57	eggNOG-mapper	349123.Lreu23DRAFT_4199	phage tail	NA
UHGV-0105332_57	COG	COG4722	Phage-related protein YomH	NA
UHGV-0105332_58	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0105332_58	PHROG	phrog_3558	tail protein	tail
UHGV-0105332_58	UniRef90	UniRef90_A0A1H0CAD6	Peptidase family M23	NA
UHGV-0105332_58	eggNOG-mapper	349123.Lreu23DRAFT_4198	Prophage endopeptidase tail	NA
UHGV-0105332_58	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0105332_58	COG	COG4926	Phage-related protein	NA
UHGV-0105332_58	Structural annotation	PF14594, PF01551, PF06605, TIGR01665, COG4379, COG0739	NA	NA
UHGV-0105332_60	PHROG	phrog_10512	virion structural protein	head and packaging
UHGV-0105332_60	UniRef90	UniRef90_UPI00136C98EA	BppU family phage baseplate upper protein	NA
UHGV-0105332_60	eggNOG-mapper	944562.HMPREF9102_0426	Calcineurin-like phosphoesterase	NA
UHGV-0105332_60	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0105332_60	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0105332_60	Structural annotation	PF18667, PF10651	NA	NA
UHGV-0105332_61	PHROG	phrog_341	major tail protein	tail
UHGV-0105332_61	UniRef90	UniRef90_A0A0D4CJ57	Tail protein	NA
UHGV-0105332_61	eggNOG-mapper	203275.BFO_0574	Bacterial group 2 Ig-like protein	NA
UHGV-0105332_61	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0105332_61	COG	COG5492	NA	NA
UHGV-0105332_61	Structural annotation	PF02368, PF07495, MF_04116, COG5492	NA	NA
UHGV-0105332_62	UniRef90	UniRef90_UPI0009BC2423	fibronectin type III domain-containing protein	NA
UHGV-0105332_62	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0105332_62	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0105332_62	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0105332_62	Structural annotation	PF18667	NA	NA
UHGV-0105332_63	Structural annotation	PF08931	NA	NA
UHGV-0105332_64	PHROG	phrog_1766	tail fiber protein	tail