UHGV-0105426

Genome information

Genome length 40,462 bps

CDS count 71

Completeness 100.00% (complete)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105426
vOTU ID	vOTU-045516
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_244071
BioSample	SAMEA3708886
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.24
Jumbo phage	No

Genome content
Genome length	40,462 bps
GC content	54.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.61%
Average CDS length	519.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105426_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0105426_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0105426_1	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-0105426_1	eggNOG-mapper	1007096.BAGW01000007_gene1922	Single-strand binding protein family	NA
UHGV-0105426_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105426_1	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0105426_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105426_1	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0105426_1	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0105426_2	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0105426_2	UniRef90	UniRef90_G9YN42	Metallo-beta-lactamase domain protein	NA
UHGV-0105426_2	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0105426_2	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0105426_2	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0105426_2	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0105426_3	PHROG	phrog_3657	NA	unknown function
UHGV-0105426_3	UniRef90	UniRef90_UPI001DC4E782	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0105426_3	eggNOG-mapper	411461.DORFOR_00020	NA	NA
UHGV-0105426_4	PHROG	phrog_674	NA	unknown function
UHGV-0105426_4	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-0105426_4	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-0105426_4	Pfam	PF07083	NA	DUF1351
UHGV-0105426_4	Structural annotation	PF07083	NA	NA
UHGV-0105426_5	COG	COG1773	Flavorubredoxin	NA
UHGV-0105426_10	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0105426_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105426_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0105426_11	UniRef90	UniRef90_UPI001F46B012	SAP domain-containing protein	NA
UHGV-0105426_11	eggNOG-mapper	485916.Dtox_1533	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0105426_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105426_12	UniRef90	UniRef90_C2EWB6	DNA-binding helix-turn-helix protein	NA
UHGV-0105426_12	eggNOG-mapper	1423814.HMPREF0549_1752	Transcriptional regulator, Cro CI family	NA
UHGV-0105426_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105426_12	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-0105426_15	PHROG	phrog_301	secreted protein	other
UHGV-0105426_15	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0105426_15	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0105426_16	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0105426_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105426_16	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0105426_16	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0105426_17	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0105426_17	PHROG	phrog_95	integrase	integration and excision
UHGV-0105426_17	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0105426_17	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0105426_17	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0105426_17	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0105426_17	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0105426_17	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0105426_18	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0105426_19	PHROG	phrog_28802	NA	unknown function
UHGV-0105426_19	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0105426_20	PHROG	phrog_20016	NA	unknown function
UHGV-0105426_20	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0105426_20	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0105426_20	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0105426_21	PHROG	phrog_16490	NA	unknown function
UHGV-0105426_21	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0105426_22	PHROG	phrog_22984	NA	unknown function
UHGV-0105426_23	PHROG	phrog_21718	NA	unknown function
UHGV-0105426_23	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0105426_24	PHROG	phrog_3754	NA	unknown function
UHGV-0105426_24	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0105426_26	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0105426_26	PHROG	phrog_670	endolysin	lysis
UHGV-0105426_26	UniRef90	UniRef90_A0A3D4D877	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0105426_26	eggNOG-mapper	1519439.JPJG01000060_gene1899	Ami_2	NA
UHGV-0105426_26	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0105426_26	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0105426_26	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0105426_27	PHROG	phrog_13256	NA	unknown function
UHGV-0105426_27	eggNOG-mapper	1519439.JPJG01000060_gene1898	NA	NA
UHGV-0105426_29	PHROG	phrog_937	hemolysin	other
UHGV-0105426_29	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0105426_30	PHROG	phrog_27545	NA	unknown function
UHGV-0105426_30	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-0105426_30	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0105426_30	Structural annotation	PF16170	NA	NA
UHGV-0105426_31	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0105426_31	UniRef90	UniRef90_A0A3D4D8F0	NA	NA
UHGV-0105426_31	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-0105426_31	Pfam	PF19789	NA	DUF6273
UHGV-0105426_31	Structural annotation	PF19789	NA	NA
UHGV-0105426_32	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0105426_32	PHROG	phrog_21962	tail protein	tail
UHGV-0105426_32	UniRef90	UniRef90_A0A858MRS5	Putative tail fiber protein	NA
UHGV-0105426_32	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0105426_32	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0105426_32	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0105426_34	Structural annotation	PF20942, NF041894, COG5456	NA	NA
UHGV-0105426_35	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0105426_35	Structural annotation	PF14594	NA	NA
UHGV-0105426_36	PHROG	phrog_6616	tail protein	tail
UHGV-0105426_36	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0105426_36	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0105426_36	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0105426_37	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0105426_38	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0105426_38	UniRef90	UniRef90_A0A3D1JBH2	Phage tail protein (Fragment)	NA
UHGV-0105426_38	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0105426_38	COG	COG1511	NA	NA
UHGV-0105426_38	Structural annotation	PF20155	NA	NA
UHGV-0105426_40	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0105426_41	PHROG	phrog_885	major tail protein	tail
UHGV-0105426_41	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0105426_41	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0105426_41	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0105426_42	PHROG	phrog_17405	head protein	head and packaging
UHGV-0105426_42	Structural annotation	PF11367	NA	NA
UHGV-0105426_43	PHROG	phrog_17977	NA	unknown function
UHGV-0105426_43	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0105426_43	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0105426_45	PHROG	phrog_544	major head protein	head and packaging
UHGV-0105426_45	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0105426_45	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0105426_45	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0105426_45	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0105426_46	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0105426_46	Structural annotation	PF06810	NA	NA
UHGV-0105426_47	PHROG	phrog_1233	NA	unknown function
UHGV-0105426_47	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0105426_47	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0105426_48	Structural annotation	PF18152	NA	NA
UHGV-0105426_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0105426_49	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0105426_49	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0105426_49	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0105426_49	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0105426_49	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0105426_50	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0105426_50	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0105426_50	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0105426_50	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0105426_50	COG	COG2369	NA	NA
UHGV-0105426_50	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0105426_51	PHROG	phrog_64	portal protein	head and packaging
UHGV-0105426_51	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0105426_51	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0105426_51	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0105426_51	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0105426_52	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105426_52	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0105426_52	UniRef90	UniRef90_A0A4D7AZ70	PBSX family phage terminase large subunit	NA
UHGV-0105426_52	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0105426_52	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0105426_52	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0105426_52	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0105426_52	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105426_52	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0105426_53	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0105426_53	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0105426_53	UniRef90	UniRef90_UPI001D05F697	terminase small subunit	NA
UHGV-0105426_53	eggNOG-mapper	697281.Mahau_0566	Terminase Small Subunit	NA
UHGV-0105426_53	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0105426_53	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0105426_53	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0105426_54	UniRef90	UniRef90_A0A285PYI3	Homeodomain-like domain	NA
UHGV-0105426_54	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0105426_54	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0105426_56	PHROG	phrog_22543	NA	unknown function
UHGV-0105426_58	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-0105426_59	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0105426_59	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0105426_62	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0105426_62	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0105426_62	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0105426_62	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0105426_62	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0105426_62	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0105426_62	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0105426_62	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0105426_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105426_63	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0105426_64	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0105426_64	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105426_64	UniRef90	UniRef90_UPI00115BCC30	helix-turn-helix domain-containing protein	NA
UHGV-0105426_64	eggNOG-mapper	460265.Mnod_5702	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105426_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105426_64	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0105426_64	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105426_64	Structural annotation	PF01381, PF13744, NF041951, COG3655, COG2944	NA	NA
UHGV-0105426_66	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105426_66	UniRef90	UniRef90_UPI001C0170D2	NA	NA
UHGV-0105426_66	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0105426_66	Pfam	PF06356	NA	DUF1064
UHGV-0105426_66	Structural annotation	PF06356	NA	NA
UHGV-0105426_67	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0105426_70	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0105426_70	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0105426_70	UniRef90	UniRef90_UPI00137A9A0F	ATP-binding protein	NA
UHGV-0105426_70	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-0105426_70	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0105426_70	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0105426_70	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0105426_70	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0105426_71	UniRef90	UniRef90_A0A5P6NIB7	Primosomal protein I	NA
UHGV-0105426_71	eggNOG-mapper	445972.ANACOL_01828	NA	NA