UHGV-0105507

Genome information

Genome length 15,758 bps

CDS count 23

Completeness 68.84% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105507
vOTU ID	vOTU-032173
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_246663
BioSample	SAMEA3708760
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.68
Jumbo phage	No

Genome content
Genome length	15,758 bps
GC content	41.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	93.44%
Average CDS length	641.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105507_3	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0105507_3	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0105507_3	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0105507_4	PHROG	phrog_2038	upper collar connector	connector
UHGV-0105507_4	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0105507_4	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0105507_4	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0105507_4	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0105507_5	PHROG	phrog_2248	tail protein	tail
UHGV-0105507_5	UniRef90	UniRef90_A0A843HUB8	Caud_tail_N domain-containing protein	NA
UHGV-0105507_5	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0105507_5	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0105507_5	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0105507_5	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0105507_6	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0105507_6	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0105507_6	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0105507_6	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0105507_8	PHROG	phrog_11037	NA	unknown function
UHGV-0105507_8	UniRef90	UniRef90_A0A843HKM9	Phage_lysozyme2 domain-containing protein	NA
UHGV-0105507_8	eggNOG-mapper	768486.EHR_07585	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0105507_8	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0105507_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0105507_8	Structural annotation	PF18013	NA	NA
UHGV-0105507_9	KOfam	K07273	acm; lysozyme	NA
UHGV-0105507_9	PHROG	phrog_291	endolysin	lysis
UHGV-0105507_9	UniRef90	UniRef90_A0A3D2G0D9	Cpl-7 domain-containing protein	NA
UHGV-0105507_9	eggNOG-mapper	877415.JNJQ01000013_gene314	Glycosyl hydrolases family 25	NA
UHGV-0105507_9	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0105507_9	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0105507_9	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0105507_9	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0105507_10	UniRef90	UniRef90_A0A843HCS4	Phage holin family protein	NA
UHGV-0105507_10	eggNOG-mapper	1111121.HMPREF1247_0008	Bacteriophage holin family	NA
UHGV-0105507_10	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0105507_10	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0105507_11	PHROG	phrog_2150	terminase	head and packaging
UHGV-0105507_11	UniRef90	UniRef90_A0A843GUV2	Phage DNA encapsidation protein	NA
UHGV-0105507_11	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0105507_11	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0105507_11	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0105507_14	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0105507_14	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0105507_14	UniRef90	UniRef90_A0A7L6N848	HD domain-containing protein	NA
UHGV-0105507_14	eggNOG-mapper	1235797.C816_03132	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0105507_14	Pfam	PF01966	HD domain	HD
UHGV-0105507_14	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0105507_14	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0105507_16	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0105507_16	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0105507_16	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0105507_16	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0105507_16	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0105507_16	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0105507_18	Structural annotation	PF17427	NA	NA
UHGV-0105507_19	Structural annotation	PF17548	NA	NA