UHGV-0105523

Genome information

Genome length 37,384 bps

CDS count 58

Completeness 97.03% (high-quality)

geNomad score 0.9678

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105523
vOTU ID	vOTU-077729
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253061
BioSample	SAMEA3708749
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.03% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9678
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.68
Jumbo phage	No

Genome content
Genome length	37,384 bps
GC content	41.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	94.46%
Average CDS length	612.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105523_1	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0105523_1	UniRef90	UniRef90_UPI001031DFED	NA	NA
UHGV-0105523_1	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0105523_1	Pfam	PF06048	NA	DUF927
UHGV-0105523_1	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0105523_1	COG	COG5519	NA	NA
UHGV-0105523_1	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0105523_2	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0105523_2	PHROG	phrog_11992	NA	unknown function
UHGV-0105523_2	UniRef90	UniRef90_A0A1G9M235	CHC2 zinc finger	NA
UHGV-0105523_2	eggNOG-mapper	944481.JAFP01000001_gene583	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0105523_2	PADLOC	drt-cluster192	DRT	DRT
UHGV-0105523_2	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0105523_2	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0105523_2	Structural annotation	PF01807, PF15188	NA	NA
UHGV-0105523_3	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0105523_3	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-0105523_3	eggNOG-mapper	887325.HMPREF0381_0094	NA	NA
UHGV-0105523_3	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0105523_3	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0105523_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0105523_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0105523_4	UniRef90	UniRef90_R6MUJ6	Single-stranded DNA-binding protein	NA
UHGV-0105523_4	eggNOG-mapper	397291.C804_00927	Single-strand binding protein family	NA
UHGV-0105523_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105523_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0105523_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105523_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0105523_4	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0105523_5	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105523_5	UniRef90	UniRef90_A0A3D0X749	NA	NA
UHGV-0105523_5	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0105523_5	Pfam	PF12684	NA	DUF3799
UHGV-0105523_5	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0105523_5	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0105523_6	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0105523_6	PHROG	phrog_1499	NA	unknown function
UHGV-0105523_6	UniRef90	UniRef90_A0A1C6FNE5	Chromosome segregation protein	NA
UHGV-0105523_6	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-0105523_6	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0105523_6	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0105523_7	PHROG	phrog_21613	NA	unknown function
UHGV-0105523_7	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0105523_13	UniRef90	UniRef90_A0A075KAP5	BetR domain protein	NA
UHGV-0105523_13	eggNOG-mapper	484770.UFO1_1664	NA	NA
UHGV-0105523_13	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0105523_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0105523_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105523_14	UniRef90	UniRef90_A0A1C5PFS1	Transcriptional repressor DicA	NA
UHGV-0105523_14	eggNOG-mapper	484770.UFO1_1663	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105523_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105523_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105523_14	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0105523_15	PHROG	phrog_87	metallo-protease	other
UHGV-0105523_15	UniRef90	UniRef90_UPI000317DBB0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0105523_15	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-0105523_15	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0105523_15	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0105523_15	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0105523_16	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0105523_16	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105523_16	UniRef90	UniRef90_A0A2N2BUK5	Endonuclease	NA
UHGV-0105523_16	eggNOG-mapper	1511.CLOST_1563	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0105523_16	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0105523_16	COG	COG4748	NA	NA
UHGV-0105523_16	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0105523_17	PHROG	phrog_10934	NA	unknown function
UHGV-0105523_17	eggNOG-mapper	632245.CLP_1672	NA	NA
UHGV-0105523_18	KOfam	K14059	int; integrase	NA
UHGV-0105523_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0105523_18	UniRef90	UniRef90_A0A7X5KR99	Site-specific integrase	NA
UHGV-0105523_18	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0105523_18	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0105523_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105523_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0105523_18	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0105523_19	eggNOG-mapper	575609.HMPREF0629_00509	Copper amine oxidase N-terminal domain	NA
UHGV-0105523_19	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0105523_19	Pfam	PF14220	NA	DUF4329
UHGV-0105523_19	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0105523_20	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0105523_20	PHROG	phrog_435	endolysin	lysis
UHGV-0105523_20	UniRef90	UniRef90_A0A1V5XGL8	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-0105523_20	eggNOG-mapper	428127.EUBDOL_01679	Ami_3	NA
UHGV-0105523_20	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0105523_20	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0105523_20	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0105523_21	PHROG	phrog_199	holin	lysis
UHGV-0105523_21	UniRef90	UniRef90_A0A7C8HEU1	Holin	NA
UHGV-0105523_21	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0105523_21	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0105523_21	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0105523_21	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0105523_21	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0105523_23	PHROG	phrog_5302	tail protein	tail
UHGV-0105523_23	UniRef90	UniRef90_UPI001C3BCE79	Phage tail protein	NA
UHGV-0105523_23	eggNOG-mapper	411470.RUMGNA_00248	Phage tail-collar fibre protein	NA
UHGV-0105523_23	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0105523_25	PHROG	phrog_1084	NA	unknown function
UHGV-0105523_25	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0105523_27	PHROG	phrog_538	minor tail protein	tail
UHGV-0105523_27	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0105523_27	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0105523_28	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0105523_28	COG	COG4722	Phage-related protein YomH	NA
UHGV-0105523_28	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0105523_29	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0105523_29	UniRef90	UniRef90_UPI001F18B975	phage tail tape measure protein	NA
UHGV-0105523_29	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0105523_29	COG	COG1511	NA	NA
UHGV-0105523_30	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0105523_30	Structural annotation	PF06854	NA	NA
UHGV-0105523_32	PHROG	phrog_3099	NA	unknown function
UHGV-0105523_32	eggNOG-mapper	428127.EUBDOL_01218	NA	NA
UHGV-0105523_32	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0105523_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0105523_33	Structural annotation	PF11114	NA	NA
UHGV-0105523_34	Structural annotation	PF16724	NA	NA
UHGV-0105523_35	Structural annotation	PF20536	NA	NA
UHGV-0105523_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0105523_38	PHROG	phrog_422	major head protein	head and packaging
UHGV-0105523_38	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0105523_38	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0105523_38	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0105523_40	eggNOG-mapper	1514668.JOOA01000001_gene690	NA	NA
UHGV-0105523_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0105523_41	UniRef90	UniRef90_A0A1C6B625	Phage minor capsid protein 2	NA
UHGV-0105523_41	eggNOG-mapper	397287.C807_03710	Type VI secretion system effector, Hcp	NA
UHGV-0105523_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0105523_41	COG	COG3157	Type VI protein secretion system component Hcp (secreted cytotoxin)	NA
UHGV-0105523_41	Structural annotation	PF06152, PF18451	NA	NA
UHGV-0105523_42	PHROG	phrog_533	portal protein	head and packaging
UHGV-0105523_42	Structural annotation	PF05133, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0105523_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105523_43	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0105523_43	UniRef90	UniRef90_A0A1C6FMV1	Phage terminase, large subunit, PBSX family	NA
UHGV-0105523_43	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0105523_43	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0105523_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0105523_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105523_43	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0105523_45	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0105523_45	UniRef90	UniRef90_UPI0007741D7F	NA	NA
UHGV-0105523_45	eggNOG-mapper	1121342.AUCO01000004_gene628	sigma factor activity	NA
UHGV-0105523_45	Pfam	PF07374	NA	DUF1492
UHGV-0105523_45	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0105523_45	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0105523_48	PHROG	phrog_3136	NA	unknown function
UHGV-0105523_48	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0105523_48	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0105523_48	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0105523_52	PHROG	phrog_8684	NA	unknown function
UHGV-0105523_52	UniRef90	UniRef90_A0A374HL96	YopX domain-containing protein	NA
UHGV-0105523_52	eggNOG-mapper	1291050.JAGE01000001_gene2910	YopX protein	NA
UHGV-0105523_52	Pfam	PF09643	YopX protein	YopX
UHGV-0105523_52	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0105523_54	Structural annotation	PF18300, MF_01549, NF007981	NA	NA
UHGV-0105523_57	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0105523_57	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0105523_57	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA