UHGV-0105529

Genome information

Genome length 48,450 bps

CDS count 72

Completeness 99.90% (high-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105529
vOTU ID	vOTU-062466
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253055
BioSample	SAMEA3708749
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.25
Jumbo phage	No

Genome content
Genome length	48,450 bps
GC content	52.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	89.46%
Average CDS length	605.00 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105529_1	UniRef90	UniRef90_R5EQN5	LPXTG-motif cell wall anchor domain protein	NA
UHGV-0105529_1	eggNOG-mapper	742722.HMPREF9463_00458	Parallel beta-helix repeats	NA
UHGV-0105529_1	Pfam	PF12892	Spy0128-like isopeptide containing domain	FctA
UHGV-0105529_1	Pfam	PF16738	Starch-binding module 26	CBM26
UHGV-0105529_1	NCBIFam	TIGR03786.1	streptococcal pilin isopeptide linkage domain	NA
UHGV-0105529_1	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0105529_2	KOfam	K03100	lepB; signal peptidase I [EC:3.4.21.89]	NA
UHGV-0105529_2	UniRef90	UniRef90_R5EE42	Signal peptidase I	NA
UHGV-0105529_2	eggNOG-mapper	1235798.C817_01178	Signal peptidase, peptidase S26	NA
UHGV-0105529_2	Pfam	PF10502	Signal peptidase, peptidase S26	Peptidase_S26
UHGV-0105529_2	NCBIFam	TIGR02227.1	signal peptidase I	NA
UHGV-0105529_2	COG	COG0681	Signal peptidase I	NA
UHGV-0105529_3	UniRef90	UniRef90_UPI00195F540C	DNA repair protein	NA
UHGV-0105529_3	eggNOG-mapper	1123304.AQYA01000032_gene876	NA	NA
UHGV-0105529_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0105529_4	PHROG	phrog_95	integrase	integration and excision
UHGV-0105529_4	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-0105529_4	eggNOG-mapper	718252.FP2_29980	NA	NA
UHGV-0105529_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0105529_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-0105529_4	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0105529_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0105529_4	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0105529_5	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0105529_8	UniRef90	UniRef90_A0A2N2CQC6	XRE family transcriptional regulator	NA
UHGV-0105529_8	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0105529_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105529_10	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0105529_15	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105529_15	UniRef90	UniRef90_UPI001D078B74	YqaJ viral recombinase family protein	NA
UHGV-0105529_15	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0105529_15	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0105529_15	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0105529_15	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0105529_15	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0105529_16	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105529_16	eggNOG-mapper	397290.C810_01484	NA	NA
UHGV-0105529_17	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0105529_17	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0105529_17	UniRef90	UniRef90_UPI0018C50A8E	recombinase RecT	NA
UHGV-0105529_17	eggNOG-mapper	40521.Q9T172_BPA18	DNA metabolic process	NA
UHGV-0105529_17	Pfam	PF03837	RecT family	RecT
UHGV-0105529_17	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0105529_17	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0105529_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0105529_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0105529_18	UniRef90	UniRef90_UPI001C118A83	single-stranded DNA-binding protein	NA
UHGV-0105529_18	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0105529_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105529_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0105529_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105529_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0105529_18	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0105529_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0105529_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105529_19	UniRef90	UniRef90_A0A7G9WF80	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0105529_19	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0105529_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0105529_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0105529_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0105529_20	PHROG	phrog_4973	NA	unknown function
UHGV-0105529_20	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0105529_20	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0105529_20	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0105529_20	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0105529_21	PHROG	phrog_16304	NA	unknown function
UHGV-0105529_21	UniRef90	UniRef90_UPI001959E913	NA	NA
UHGV-0105529_21	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0105529_21	Pfam	PF19808	NA	DUF6291
UHGV-0105529_21	Structural annotation	PF19808	NA	NA
UHGV-0105529_22	PHROG	phrog_9804	NA	unknown function
UHGV-0105529_22	UniRef90	UniRef90_A0A3D1LDS2	Inhibitor_G39P domain-containing protein	NA
UHGV-0105529_22	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0105529_22	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0105529_22	Structural annotation	PF11417	NA	NA
UHGV-0105529_24	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0105529_24	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0105529_24	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0105529_24	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0105529_24	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0105529_24	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0105529_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0105529_24	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0105529_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0105529_26	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0105529_26	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0105529_26	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0105529_26	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0105529_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0105529_26	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0105529_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0105529_28	PHROG	phrog_3136	NA	unknown function
UHGV-0105529_28	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-0105529_28	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0105529_28	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0105529_30	Pfam	PF04448	NA	DUF551
UHGV-0105529_30	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0105529_31	PHROG	phrog_924	NA	unknown function
UHGV-0105529_31	UniRef90	UniRef90_A0A6A1T518	NA	NA
UHGV-0105529_31	Pfam	PF04448	NA	DUF551
UHGV-0105529_33	Structural annotation	PF10013, NF001638, COG4338	NA	NA
UHGV-0105529_38	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0105529_38	UniRef90	UniRef90_UPI001C012D23	DNA-packaging protein	NA
UHGV-0105529_38	eggNOG-mapper	1280663.ATVR01000009_gene2143	NA	NA
UHGV-0105529_38	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0105529_38	Structural annotation	PF16677	NA	NA
UHGV-0105529_40	Structural annotation	PF14201	NA	NA
UHGV-0105529_42	UniRef90	UniRef90_A0A7C6Y3R2	Helix-turn-helix domain-containing protein	NA
UHGV-0105529_42	Structural annotation	PF20075, TIGR03070	NA	NA
UHGV-0105529_44	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0105529_44	Structural annotation	PF13240	NA	NA
UHGV-0105529_45	PHROG	phrog_1233	NA	unknown function
UHGV-0105529_45	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0105529_45	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0105529_46	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0105529_46	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0105529_46	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0105529_46	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0105529_46	COG	COG5410	NA	NA
UHGV-0105529_46	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0105529_48	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0105529_48	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0105529_48	UniRef90	UniRef90_UPI001C3C1005	Phage antirepressor KilAC domain-containing protein	NA
UHGV-0105529_48	eggNOG-mapper	568816.Acin_1403	Phage antirepressor protein KilAC domain	NA
UHGV-0105529_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0105529_48	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0105529_48	COG	COG3617	Prophage antirepressor	NA
UHGV-0105529_48	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-0105529_50	PHROG	phrog_64	portal protein	head and packaging
UHGV-0105529_50	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0105529_50	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0105529_50	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0105529_50	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0105529_53	PHROG	phrog_247	major head protein	head and packaging
UHGV-0105529_53	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-0105529_53	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0105529_53	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0105529_53	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0105529_55	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0105529_55	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0105529_55	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0105529_55	Structural annotation	TIGR01560	NA	NA
UHGV-0105529_56	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0105529_57	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0105529_58	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0105529_59	PHROG	phrog_158	major tail protein	tail
UHGV-0105529_59	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0105529_59	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0105529_59	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0105529_60	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0105529_60	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0105529_60	Pfam	PF16478	NA	DUF5055
UHGV-0105529_60	Structural annotation	PF16478	NA	NA
UHGV-0105529_61	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-0105529_62	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0105529_62	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0105529_62	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0105529_63	PHROG	phrog_1194	NA	unknown function
UHGV-0105529_63	eggNOG-mapper	702450.CUW_0546	NA	NA
UHGV-0105529_63	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0105529_64	PHROG	phrog_6616	tail protein	tail
UHGV-0105529_64	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0105529_64	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0105529_65	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0105529_65	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0105529_68	PHROG	phrog_30133	virion structural protein	head and packaging
UHGV-0105529_68	eggNOG-mapper	1123263.AUKY01000051_gene1069	cellulase activity	NA
UHGV-0105529_68	COG	COG4926	Phage-related protein	NA
UHGV-0105529_69	Structural annotation	PF14686, PF07210, PF21582, TIGR03000, TIGR04183, COG2512	NA	NA
UHGV-0105529_72	eggNOG-mapper	1151292.QEW_0668	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0105529_72	COG	COG5301	Phage-related tail fiber protein	NA