UHGV-0105546

Genome information

Genome length 49,345 bps

CDS count 74

Completeness 99.90% (high-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105546
vOTU ID	vOTU-013603
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_244000
BioSample	SAMEA3708886
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.38
Jumbo phage	No

Genome content
Genome length	49,345 bps
GC content	33.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	91.17%
Average CDS length	610.78 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105546_1	PHROG	phrog_32072	tail protein	tail
UHGV-0105546_1	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-0105546_1	Structural annotation	PF10651	NA	NA
UHGV-0105546_2	PHROG	phrog_13256	NA	unknown function
UHGV-0105546_2	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0105546_4	PHROG	phrog_538	minor tail protein	tail
UHGV-0105546_4	eggNOG-mapper	235909.GK0542	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0105546_4	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0105546_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0105546_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0105546_5	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0105546_6	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0105546_6	eggNOG-mapper	565664.EFXG_01767	Phage-related minor tail protein	NA
UHGV-0105546_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0105546_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0105546_6	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0105546_6	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0105546_7	PHROG	phrog_6280	NA	unknown function
UHGV-0105546_7	UniRef90	UniRef90_UPI0018AADA99	esterase	NA
UHGV-0105546_7	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-0105546_8	PHROG	phrog_6686	tail tube protein	tail
UHGV-0105546_8	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0105546_8	eggNOG-mapper	871584.D9ZNE2_9CAUD	NA	NA
UHGV-0105546_8	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0105546_9	PHROG	phrog_7585	NA	unknown function
UHGV-0105546_9	eggNOG-mapper	748727.CLJU_c31260	NA	NA
UHGV-0105546_10	eggNOG-mapper	580331.Thit_1383	NA	NA
UHGV-0105546_10	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0105546_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0105546_13	PHROG	phrog_29	major head protein	head and packaging
UHGV-0105546_13	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0105546_13	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0105546_13	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0105546_13	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0105546_14	PHROG	phrog_909	major head protein	head and packaging
UHGV-0105546_14	UniRef90	UniRef90_A0A098MDH2	NA	NA
UHGV-0105546_14	eggNOG-mapper	1158607.UAU_01759	NA	NA
UHGV-0105546_14	Structural annotation	PF02924	NA	NA
UHGV-0105546_15	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0105546_17	KOfam	K05521	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	NA
UHGV-0105546_17	PHROG	phrog_6572	ADP-ribosylglycohydrolase	other
UHGV-0105546_17	UniRef90	UniRef90_A0A349YJR3	Adhesin	NA
UHGV-0105546_17	eggNOG-mapper	411465.PEPMIC_00852	ADP-ribosylglycohydrolase	NA
UHGV-0105546_17	Pfam	PF03747	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
UHGV-0105546_17	COG	COG1397	ADP-ribosylglycohydrolase	NA
UHGV-0105546_17	Structural annotation	PF03747, NF041672, COG1397	NA	NA
UHGV-0105546_19	PHROG	phrog_421	NA	unknown function
UHGV-0105546_19	UniRef90	UniRef90_A0A7U9X7X4	NA	NA
UHGV-0105546_19	eggNOG-mapper	97139.C824_00143	NA	NA
UHGV-0105546_19	Pfam	PF10979	NA	DUF2786
UHGV-0105546_19	Structural annotation	PF10979	NA	NA
UHGV-0105546_20	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0105546_20	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0105546_20	UniRef90	UniRef90_A0A349YJR5	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0105546_20	eggNOG-mapper	1582149.A0A0A8WEF5_9CAUD	Phage Mu protein F like protein	NA
UHGV-0105546_20	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0105546_20	Structural annotation	PF03496, NF040688	NA	NA
UHGV-0105546_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0105546_21	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-0105546_21	eggNOG-mapper	748727.CLJU_c31370	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0105546_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0105546_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0105546_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105546_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0105546_22	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-0105546_22	eggNOG-mapper	536232.CLM_2529	Phage terminase, large subunit, PBSX family	NA
UHGV-0105546_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0105546_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0105546_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0105546_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105546_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0105546_23	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0105546_23	UniRef90	UniRef90_A0A843GSL4	Helix-turn-helix transcriptional regulator	NA
UHGV-0105546_23	eggNOG-mapper	411468.CLOSCI_00294	transposase activity	NA
UHGV-0105546_23	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0105546_23	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0105546_25	UniRef90	UniRef90_G3MB28	Gp648	NA
UHGV-0105546_27	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0105546_27	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0105546_27	UniRef90	UniRef90_A0A843GQE5	Ribonuclease H	NA
UHGV-0105546_27	eggNOG-mapper	608506.COB47_1217	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0105546_27	Pfam	PF00075	RNase H	RNase_H
UHGV-0105546_27	COG	COG0328	Ribonuclease HI	NA
UHGV-0105546_27	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0105546_28	Structural annotation	PF10922	NA	NA
UHGV-0105546_31	Structural annotation	PF21138, NF009630, COG2375	NA	NA
UHGV-0105546_32	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105546_32	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0105546_34	PHROG	phrog_21015	NA	unknown function
UHGV-0105546_35	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0105546_35	UniRef90	UniRef90_I0GVF0	Putative phage related protein	NA
UHGV-0105546_35	eggNOG-mapper	720555.BATR1942_09670	NAD-dependent DNA ligase adenylation domain	NA
UHGV-0105546_35	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0105546_37	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105546_37	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0105546_38	KOfam	K01854	glf; UDP-galactopyranose mutase [EC:5.4.99.9]	NA
UHGV-0105546_38	PHROG	phrog_9677	NA	unknown function
UHGV-0105546_38	UniRef90	UniRef90_UPI0003B71602	UDP-galactopyranose mutase	NA
UHGV-0105546_38	eggNOG-mapper	1410633.JHWR01000001_gene1378	UDP-galactopyranose mutase	NA
UHGV-0105546_38	Pfam	PF13450	NAD(P)-binding Rossmann-like domain	NAD_binding_8
UHGV-0105546_38	Pfam	PF03275	UDP-galactopyranose mutase	GLF
UHGV-0105546_38	NCBIFam	TIGR00031.1	UDP-galactopyranose mutase	NA
UHGV-0105546_38	COG	COG0562	UDP-galactopyranose mutase	NA
UHGV-0105546_38	Structural annotation	PF03275, PF13450, MF_02074, TIGR00031, COG0562	NA	NA
UHGV-0105546_41	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0105546_41	UniRef90	UniRef90_A0A832ELP9	Dna2/Cas4 domain-containing protein	NA
UHGV-0105546_41	eggNOG-mapper	1499968.TCA2_4616	DNA catabolic process, exonucleolytic	NA
UHGV-0105546_41	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-0105546_41	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0105546_42	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0105546_42	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0105546_42	UniRef90	UniRef90_A0A843GSI3	Cytidine deaminase	NA
UHGV-0105546_42	eggNOG-mapper	634498.mru_1286	deaminase	NA
UHGV-0105546_42	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0105546_42	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0105546_42	Structural annotation	PF00383, TIGR02571, COG2131	NA	NA
UHGV-0105546_44	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0105546_46	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0105546_46	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0105546_46	UniRef90	UniRef90_A0A843GSV7	RECA_3 domain-containing protein	NA
UHGV-0105546_46	eggNOG-mapper	1188240.MYEA_0660	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0105546_46	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0105546_46	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0105546_46	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0105546_47	UniRef90	UniRef90_T3DAM5	Pyrimidine dimer DNA glycosylase family protein	NA
UHGV-0105546_47	eggNOG-mapper	272563.CD630_17570	Pyrimidine dimer DNA glycosylase	NA
UHGV-0105546_47	Pfam	PF03013	Pyrimidine dimer DNA glycosylase	Pyr_excise
UHGV-0105546_47	Structural annotation	PF03013, TIGR02328	NA	NA
UHGV-0105546_48	UniRef90	UniRef90_R7EVG2	Thymidylate synthase ThyX	NA
UHGV-0105546_48	eggNOG-mapper	1235793.C809_02394	NA	NA
UHGV-0105546_48	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0105546_48	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0105546_49	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0105546_49	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0105546_49	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-0105546_49	eggNOG-mapper	204536.SULAZ_0041	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-0105546_49	Pfam	PF02811	PHP domain	PHP
UHGV-0105546_49	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0105546_49	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0105546_49	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0105546_49	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0105546_49	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0105546_50	Structural annotation	PF07429, MF_01002, NF002752, COG1819	NA	NA
UHGV-0105546_51	PHROG	phrog_5757	peptidase	other
UHGV-0105546_51	UniRef90	UniRef90_A0A0G2SSU7	Peptidase	NA
UHGV-0105546_51	eggNOG-mapper	12353.Q7Y588_BPR69	Peptidase family U32	NA
UHGV-0105546_51	Pfam	PF01136	Peptidase family U32	Peptidase_U32
UHGV-0105546_51	Structural annotation	PF19200, MF_02232, NF011996, COG0826	NA	NA
UHGV-0105546_52	PHROG	phrog_3891	NA	unknown function
UHGV-0105546_52	eggNOG-mapper	760732.E5E460_9CAUD	NA	NA
UHGV-0105546_52	Structural annotation	PF04007, MF_01695, TIGR03449, COG0438	NA	NA
UHGV-0105546_53	PHROG	phrog_761	thymidylate kinase	other
UHGV-0105546_53	Pfam	PF02223	Thymidylate kinase	Thymidylate_kin
UHGV-0105546_53	Structural annotation	PF01591, MF_00165, NF005250, COG0125	NA	NA
UHGV-0105546_54	UniRef90	UniRef90_A0A7X8WD06	NA	NA
UHGV-0105546_54	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0105546_54	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0105546_55	Structural annotation	PF08804	NA	NA
UHGV-0105546_56	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0105546_56	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0105546_56	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0105546_56	eggNOG-mapper	1301100.HG529352_gene4261	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0105546_56	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0105546_56	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0105546_56	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0105546_56	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0105546_58	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0105546_58	Structural annotation	PF07498, PF09465, MF_00749, NF037951, COG1862	NA	NA
UHGV-0105546_62	PHROG	phrog_8684	NA	unknown function
UHGV-0105546_62	UniRef90	UniRef90_A0A374HKH4	YopX domain-containing protein	NA
UHGV-0105546_62	eggNOG-mapper	411473.RUMCAL_00280	YopX protein	NA
UHGV-0105546_62	Pfam	PF09643	YopX protein	YopX
UHGV-0105546_62	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0105546_62	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0105546_64	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0105546_65	PHROG	phrog_20016	NA	unknown function
UHGV-0105546_65	UniRef90	UniRef90_A0A395WF88	BclA_C domain-containing protein	NA
UHGV-0105546_65	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0105546_67	PHROG	phrog_16490	NA	unknown function
UHGV-0105546_67	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0105546_72	KOfam	K07273	acm; lysozyme	NA
UHGV-0105546_72	PHROG	phrog_291	endolysin	lysis
UHGV-0105546_72	UniRef90	UniRef90_A0A1H7PYN2	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0105546_72	eggNOG-mapper	1384065.JAGS01000001_gene162	Glycosyl hydrolases family 25	NA
UHGV-0105546_72	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0105546_72	Pfam	PF01476	LysM domain	LysM
UHGV-0105546_72	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0105546_72	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0105546_73	PHROG	phrog_134	NA	unknown function
UHGV-0105546_73	UniRef90	UniRef90_A0A374ERE4	XkdX family protein	NA
UHGV-0105546_73	eggNOG-mapper	478749.BRYFOR_07560	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0105546_73	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0105546_73	Structural annotation	PF09693, TIGR01669	NA	NA