UHGV-0105557

Genome information

Genome length 34,673 bps

CDS count 63

Completeness 79.77% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105557
vOTU ID	vOTU-023962
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_251108
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.3
Jumbo phage	No

Genome content
Genome length	34,673 bps
GC content	52.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	91.99%
Average CDS length	510.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105557_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0105557_2	UniRef90	UniRef90_G9YR83	DNA-binding helix-turn-helix protein	NA
UHGV-0105557_2	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-0105557_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105557_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105557_2	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0105557_7	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0105557_7	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0105557_10	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0105557_10	PHROG	phrog_9562	NA	unknown function
UHGV-0105557_10	UniRef90	UniRef90_A0A6N3FDD3	Pentapeptide repeats (8 copies)	NA
UHGV-0105557_10	eggNOG-mapper	1232443.BAIA02000078_gene49	Pentapeptide repeat protein	NA
UHGV-0105557_10	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0105557_10	Pfam	PF19062	NA	DUF5758
UHGV-0105557_10	COG	COG1357	NA	NA
UHGV-0105557_10	Structural annotation	PF19062, PF13599, NF033086, COG1357	NA	NA
UHGV-0105557_11	PHROG	phrog_1123	NA	unknown function
UHGV-0105557_11	UniRef90	UniRef90_UPI001EDDCAAF	DNA gyrase	NA
UHGV-0105557_11	eggNOG-mapper	411483.FAEPRAA2165_01885	NA	NA
UHGV-0105557_11	Pfam	PF13814	Replication-relaxation	Replic_Relax
UHGV-0105557_11	Structural annotation	PF04703, MF_01804, TIGR00373, COG1695	NA	NA
UHGV-0105557_13	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105557_13	UniRef90	UniRef90_UPI001C97FE83	PD-(D/E)XK nuclease family protein	NA
UHGV-0105557_13	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0105557_13	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0105557_14	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0105557_14	UniRef90	UniRef90_A0A174RC35	RecT family	NA
UHGV-0105557_14	eggNOG-mapper	1215092.PA6_009_00610	NA	NA
UHGV-0105557_14	Pfam	PF03837	RecT family	RecT
UHGV-0105557_14	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0105557_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0105557_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0105557_15	UniRef90	UniRef90_A0A174RD30	Single-stranded DNA-binding protein	NA
UHGV-0105557_15	eggNOG-mapper	742738.HMPREF9460_00833	Single-strand binding protein family	NA
UHGV-0105557_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105557_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0105557_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105557_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0105557_15	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0105557_16	Structural annotation	PF11417	NA	NA
UHGV-0105557_17	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105557_17	UniRef90	UniRef90_A0A6A8VJ62	NA	NA
UHGV-0105557_17	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0105557_17	Pfam	PF06356	NA	DUF1064
UHGV-0105557_17	Structural annotation	PF06356	NA	NA
UHGV-0105557_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0105557_18	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0105557_18	UniRef90	UniRef90_A0A6I2QZV1	Cytosine-specific methyltransferase	NA
UHGV-0105557_18	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-0105557_18	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0105557_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0105557_18	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0105557_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0105557_18	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0105557_19	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-0105557_19	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0105557_19	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0105557_20	PHROG	phrog_5765	NA	unknown function
UHGV-0105557_20	UniRef90	UniRef90_UPI001D008E2F	BC1881 family protein	NA
UHGV-0105557_20	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-0105557_20	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0105557_22	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0105557_22	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0105557_22	UniRef90	UniRef90_UPI001D0084C1	site-specific DNA-methyltransferase	NA
UHGV-0105557_22	eggNOG-mapper	411902.CLOBOL_00154	DNA methylase	NA
UHGV-0105557_22	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0105557_22	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0105557_22	COG	COG0863	DNA modification methylase	NA
UHGV-0105557_22	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0105557_23	PHROG	phrog_25732	NA	unknown function
UHGV-0105557_23	eggNOG-mapper	742738.HMPREF9460_01358	Endodeoxyribonuclease RusA	NA
UHGV-0105557_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0105557_24	Structural annotation	NF000937	NA	NA
UHGV-0105557_25	PHROG	phrog_37865	NA	unknown function
UHGV-0105557_26	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105557_26	UniRef90	UniRef90_A0A7W0C2S3	Putative transcriptional regulator	NA
UHGV-0105557_26	eggNOG-mapper	742767.HMPREF9456_02044	NA	NA
UHGV-0105557_29	PHROG	phrog_22543	NA	unknown function
UHGV-0105557_34	PHROG	phrog_924	NA	unknown function
UHGV-0105557_34	UniRef90	UniRef90_A0A1C7FSW4	NA	NA
UHGV-0105557_34	Pfam	PF04448	NA	DUF551
UHGV-0105557_34	Structural annotation	NF041588	NA	NA
UHGV-0105557_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105557_35	UniRef90	UniRef90_UPI0019230A1A	helix-turn-helix domain-containing protein	NA
UHGV-0105557_35	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0105557_35	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0105557_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105557_35	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0105557_36	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105557_36	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0105557_37	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0105557_37	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105557_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105557_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105557_37	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0105557_39	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0105557_39	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0105557_39	UniRef90	UniRef90_A0A7I8D1Y4	Putative P1-type antirepressor - phage associated	NA
UHGV-0105557_39	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0105557_39	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0105557_39	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0105557_39	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0105557_39	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0105557_40	UniRef90	UniRef90_UPI0018AC41F1	helix-turn-helix domain-containing protein	NA
UHGV-0105557_40	eggNOG-mapper	1232443.BAIA02000078_gene38	NA	NA
UHGV-0105557_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105557_41	PHROG	phrog_29775	NA	unknown function
UHGV-0105557_41	UniRef90	UniRef90_A0A1C6B5W6	Phage terminase, large subunit, PBSX family	NA
UHGV-0105557_41	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-0105557_41	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0105557_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0105557_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105557_41	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0105557_42	PHROG	phrog_533	portal protein	head and packaging
UHGV-0105557_42	UniRef90	UniRef90_A0A136WBU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0105557_42	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0105557_42	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0105557_43	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0105557_43	UniRef90	UniRef90_A0A1C6B625	Phage minor capsid protein 2	NA
UHGV-0105557_43	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0105557_43	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0105557_43	COG	COG2369	NA	NA
UHGV-0105557_43	Structural annotation	PF06152	NA	NA
UHGV-0105557_44	PHROG	phrog_1233	NA	unknown function
UHGV-0105557_44	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0105557_44	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0105557_45	UniRef90	UniRef90_A0A1C6B5I1	Phage minor structural protein GP20	NA
UHGV-0105557_45	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0105557_45	Structural annotation	PF06810	NA	NA
UHGV-0105557_46	PHROG	phrog_544	major head protein	head and packaging
UHGV-0105557_46	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0105557_46	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0105557_46	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0105557_46	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0105557_47	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0105557_47	UniRef90	UniRef90_A0A345MKD1	Putative head-tail connector protein	NA
UHGV-0105557_48	PHROG	phrog_3366	NA	unknown function
UHGV-0105557_48	Pfam	PF20536	NA	DUF6751
UHGV-0105557_48	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0105557_49	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0105557_49	UniRef90	UniRef90_UPI001C3B04D8	Minor capsid protein	NA
UHGV-0105557_49	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0105557_49	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0105557_49	Structural annotation	PF11114	NA	NA
UHGV-0105557_50	PHROG	phrog_3266	tail completion	connector
UHGV-0105557_50	Structural annotation	PF12691	NA	NA
UHGV-0105557_51	PHROG	phrog_820	major tail protein	tail
UHGV-0105557_51	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0105557_51	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0105557_51	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0105557_52	Structural annotation	PF20378	NA	NA
UHGV-0105557_53	PHROG	phrog_706	NA	unknown function
UHGV-0105557_53	UniRef90	UniRef90_A0A1C6B556	Bacteriophage Gp15 protein	NA
UHGV-0105557_53	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-0105557_53	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0105557_53	Structural annotation	PF06854	NA	NA
UHGV-0105557_54	PHROG	phrog_23464	NA	unknown function
UHGV-0105557_54	eggNOG-mapper	1378168.N510_03078	Tail tape measure protein, TP901 family	NA
UHGV-0105557_54	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0105557_54	Structural annotation	PF20155, TIGR02971, COG5280	NA	NA
UHGV-0105557_55	PHROG	phrog_1194	NA	unknown function
UHGV-0105557_55	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-0105557_55	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0105557_56	PHROG	phrog_32744	NA	unknown function
UHGV-0105557_56	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0105557_56	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0105557_58	eggNOG-mapper	1203606.HMPREF1526_02029	Collagen triple helix repeat (20 copies)	NA
UHGV-0105557_58	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0105557_58	Structural annotation	PF10651, COG5456	NA	NA
UHGV-0105557_59	PHROG	phrog_13589	NA	unknown function
UHGV-0105557_59	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0105557_59	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0105557_61	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0105557_61	UniRef90	UniRef90_UPI0018AA21C1	NA	NA
UHGV-0105557_61	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0105557_61	Pfam	PF19789	NA	DUF6273
UHGV-0105557_61	Structural annotation	PF19789	NA	NA
UHGV-0105557_62	PHROG	phrog_37900	NA	unknown function
UHGV-0105557_62	UniRef90	UniRef90_UPI0018A945F9	NA	NA
UHGV-0105557_62	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0105557_62	Pfam	PF19789	NA	DUF6273
UHGV-0105557_62	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0105557_62	Structural annotation	PF19789	NA	NA
UHGV-0105557_63	PHROG	phrog_27545	NA	unknown function
UHGV-0105557_63	eggNOG-mapper	742738.HMPREF9460_00363	NA	NA