UHGV-0105596

Genome information

Genome length 41,389 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105596
vOTU ID	vOTU-008561
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_238965
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.69
Jumbo phage	No

Genome content
Genome length	41,389 bps
GC content	43.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	89.27%
Average CDS length	590.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105596_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0105596_1	PHROG	phrog_435	endolysin	lysis
UHGV-0105596_1	UniRef90	UniRef90_R6EYI0	MurNAc-LAA domain-containing protein	NA
UHGV-0105596_1	eggNOG-mapper	397287.C807_01741	Ami_3	NA
UHGV-0105596_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0105596_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0105596_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0105596_3	Pfam	PF10722	Putative bacterial sensory transduction regulator	YbjN
UHGV-0105596_6	KOfam	K07273	acm; lysozyme	NA
UHGV-0105596_6	PHROG	phrog_291	endolysin	lysis
UHGV-0105596_6	UniRef90	UniRef90_A0A1Q6KJN7	LysM domain-containing protein	NA
UHGV-0105596_6	eggNOG-mapper	1235793.C809_01934	Glycosyl hydrolases family 25	NA
UHGV-0105596_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0105596_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0105596_6	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0105596_7	PHROG	phrog_15303	NA	unknown function
UHGV-0105596_7	eggNOG-mapper	1291050.JAGE01000001_gene431	NA	NA
UHGV-0105596_8	PHROG	phrog_1863	NA	unknown function
UHGV-0105596_8	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0105596_8	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0105596_9	PHROG	phrog_17180	NA	unknown function
UHGV-0105596_9	Structural annotation	PF14282	NA	NA
UHGV-0105596_10	COG	COG4675	Phage tail collar domain	NA
UHGV-0105596_11	PHROG	phrog_9886	NA	unknown function
UHGV-0105596_11	UniRef90	UniRef90_A0A415N138	Peptidase S74 domain-containing protein	NA
UHGV-0105596_11	eggNOG-mapper	1120933.ATUY01000002_gene164	Prophage endopeptidase tail	NA
UHGV-0105596_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0105596_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0105596_11	COG	COG4926	Phage-related protein	NA
UHGV-0105596_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0105596_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0105596_12	UniRef90	UniRef90_A0A374UNT1	MtfA protein	NA
UHGV-0105596_12	eggNOG-mapper	610130.Closa_0753	phage tail	NA
UHGV-0105596_12	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0105596_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0105596_12	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0105596_13	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0105596_13	UniRef90	UniRef90_U2Q4W9	Phage tail tape measure protein, TP901 family	NA
UHGV-0105596_13	eggNOG-mapper	1256908.HMPREF0373_00468	Phage tail tape measure protein, TP901 family	NA
UHGV-0105596_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0105596_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0105596_13	COG	COG5283	Phage-related tail protein	NA
UHGV-0105596_15	eggNOG-mapper	929506.CbC4_1222	NA	NA
UHGV-0105596_16	PHROG	phrog_885	major tail protein	tail
UHGV-0105596_16	eggNOG-mapper	1235800.C819_02228	NA	NA
UHGV-0105596_16	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0105596_17	PHROG	phrog_957	head protein	head and packaging
UHGV-0105596_17	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0105596_17	Structural annotation	PF12691	NA	NA
UHGV-0105596_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0105596_18	UniRef90	UniRef90_A0A416I9Q2	HK97 gp10 family phage protein	NA
UHGV-0105596_18	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0105596_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0105596_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0105596_19	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0105596_19	UniRef90	UniRef90_A0A416AFR5	Head-tail adaptor protein	NA
UHGV-0105596_19	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0105596_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0105596_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0105596_20	PHROG	phrog_1236	head protein	head and packaging
UHGV-0105596_20	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0105596_20	Structural annotation	PF05135	NA	NA
UHGV-0105596_22	PHROG	phrog_212	major head protein	head and packaging
UHGV-0105596_22	UniRef90	UniRef90_UPI001C105D30	phage capsid protein	NA
UHGV-0105596_22	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0105596_22	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0105596_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0105596_23	UniRef90	UniRef90_A0A1C6E8W4	Phage minor structural protein GP20	NA
UHGV-0105596_23	eggNOG-mapper	1232449.BAHV02000010_gene2713	NA	NA
UHGV-0105596_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0105596_23	Structural annotation	PF06810	NA	NA
UHGV-0105596_24	UniRef90	UniRef90_R6QRM6	Minor capsid protein	NA
UHGV-0105596_24	eggNOG-mapper	1121335.Clst_0388	NA	NA
UHGV-0105596_25	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0105596_25	UniRef90	UniRef90_A0A4P6LVW3	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0105596_25	eggNOG-mapper	1235800.C819_02238	Phage Mu protein F like protein	NA
UHGV-0105596_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0105596_25	COG	COG2369	NA	NA
UHGV-0105596_25	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0105596_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0105596_26	UniRef90	UniRef90_U2Q3Z0	Putative phage portal protein, SPP1 Gp6	NA
UHGV-0105596_26	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0105596_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0105596_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0105596_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105596_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0105596_27	UniRef90	UniRef90_U2RK66	Phage terminase, large subunit, PBSX family	NA
UHGV-0105596_27	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0105596_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0105596_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0105596_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0105596_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105596_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0105596_28	PHROG	phrog_1233	NA	unknown function
UHGV-0105596_28	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-0105596_28	Structural annotation	PF13058	NA	NA
UHGV-0105596_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0105596_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0105596_30	UniRef90	UniRef90_A0A396P294	Terminase small subunit	NA
UHGV-0105596_30	eggNOG-mapper	887325.HMPREF0381_0088	Terminase small subunit	NA
UHGV-0105596_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0105596_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0105596_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0105596_31	UniRef90	UniRef90_R6BYX9	Transcriptional activator	NA
UHGV-0105596_31	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0105596_32	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0105596_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0105596_32	UniRef90	UniRef90_A0A6L5YGD3	Tyrosine-type recombinase/integrase	NA
UHGV-0105596_32	eggNOG-mapper	1304866.K413DRAFT_3024	Belongs to the 'phage' integrase family	NA
UHGV-0105596_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105596_32	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0105596_32	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0105596_33	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0105596_33	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105596_33	UniRef90	UniRef90_E7GQD4	Gp26	NA
UHGV-0105596_33	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0105596_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0105596_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0105596_33	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0105596_34	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0105596_34	UniRef90	UniRef90_UPI00156F6AA5	methyltransferase domain-containing protein	NA
UHGV-0105596_34	eggNOG-mapper	903814.ELI_1283	methyltransferase	NA
UHGV-0105596_34	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0105596_34	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0105596_34	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0105596_35	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0105596_37	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0105596_37	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0105596_38	PHROG	phrog_15077	NA	unknown function
UHGV-0105596_38	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0105596_38	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0105596_38	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0105596_40	PHROG	phrog_8470	NA	unknown function
UHGV-0105596_40	UniRef90	UniRef90_UPI001D0E6B3F	PcfJ domain-containing protein	NA
UHGV-0105596_40	eggNOG-mapper	411902.CLOBOL_05697	PcfJ-like protein	NA
UHGV-0105596_40	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0105596_40	Structural annotation	PF14284	NA	NA
UHGV-0105596_41	PHROG	phrog_4433	NA	unknown function
UHGV-0105596_41	eggNOG-mapper	411902.CLOBOL_05698	regulation of DNA-templated transcription, elongation	NA
UHGV-0105596_41	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0105596_41	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0105596_42	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0105596_43	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0105596_43	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0105596_43	UniRef90	UniRef90_A0A3D5M0W6	RNase H type-1 domain-containing protein	NA
UHGV-0105596_43	eggNOG-mapper	1235792.C808_03260	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0105596_43	Pfam	PF00075	RNase H	RNase_H
UHGV-0105596_43	COG	COG0328	Ribonuclease HI	NA
UHGV-0105596_43	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0105596_44	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0105596_44	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0105596_44	Structural annotation	PF21578, COG2092	NA	NA
UHGV-0105596_46	UniRef90	UniRef90_A0A373K1C9	LPXTG cell wall anchor domain-containing protein	NA
UHGV-0105596_54	PHROG	phrog_585	NA	unknown function
UHGV-0105596_54	UniRef90	UniRef90_A0A7G5N1G4	NA	NA
UHGV-0105596_54	eggNOG-mapper	1280692.AUJL01000009_gene2980	NA	NA
UHGV-0105596_54	Pfam	PF10711	NA	DUF2513
UHGV-0105596_54	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0105596_56	Structural annotation	PF07875	NA	NA
UHGV-0105596_59	UniRef90	UniRef90_UPI0015F7B8EC	XRE family transcriptional regulator	NA
UHGV-0105596_59	eggNOG-mapper	1321814.HMPREF9089_00909	Helix-turn-helix domain of resolvase	NA
UHGV-0105596_59	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0105596_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0105596_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105596_60	UniRef90	UniRef90_A0A3D5M3K0	HTH cro/C1-type domain-containing protein	NA
UHGV-0105596_60	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-0105596_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105596_60	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0105596_61	PHROG	phrog_87	metallo-protease	other
UHGV-0105596_61	UniRef90	UniRef90_A0A3D5M0U7	Peptidase_M78 domain-containing protein	NA
UHGV-0105596_61	eggNOG-mapper	1220589.CD32_16955	Zn peptidase	NA
UHGV-0105596_61	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0105596_61	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0105596_61	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0105596_62	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0105596_62	UniRef90	UniRef90_A0A417QIY2	Abi family protein	NA
UHGV-0105596_62	eggNOG-mapper	411490.ANACAC_00817	Abi-like protein	NA
UHGV-0105596_62	PADLOC	AbiD	AbiD	Abi
UHGV-0105596_62	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0105596_62	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0105596_62	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0105596_63	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0105596_63	PHROG	phrog_95	integrase	integration and excision
UHGV-0105596_63	UniRef90	UniRef90_A0A373K3J7	Recombinase family protein	NA
UHGV-0105596_63	eggNOG-mapper	658088.HMPREF0987_00026	Recombinase	NA
UHGV-0105596_63	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0105596_63	Pfam	PF07508	Recombinase	Recombinase
UHGV-0105596_63	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0105596_63	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0105596_63	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA