UHGV-0105607

Genome information

Genome length 26,861 bps

CDS count 42

Completeness 99.90% (high-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105607
vOTU ID	vOTU-069607
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_266734
BioSample	SAMEA3879505
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.96
Jumbo phage	No

Genome content
Genome length	26,861 bps
GC content	39.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	93.98%
Average CDS length	606.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105607_2	UniRef90	UniRef90_UPI001B3C704F	helix-turn-helix domain-containing protein	NA
UHGV-0105607_2	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0105607_4	PHROG	phrog_87	metallo-protease	other
UHGV-0105607_4	UniRef90	UniRef90_UPI001A9A7A19	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0105607_4	eggNOG-mapper	997296.PB1_16109	NA	NA
UHGV-0105607_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0105607_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0105607_4	Structural annotation	PF06114, MF_00745, COG2856	NA	NA
UHGV-0105607_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0105607_5	UniRef90	UniRef90_R5YVK6	HTH cro/C1-type domain-containing protein	NA
UHGV-0105607_5	eggNOG-mapper	59374.Fisuc_2499	sequence-specific DNA binding	NA
UHGV-0105607_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0105607_5	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0105607_5	COG	COG1426	NA	NA
UHGV-0105607_5	Structural annotation	PF13560, MF_00535, NF041951, COG1513	NA	NA
UHGV-0105607_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0105607_6	PHROG	phrog_435	endolysin	lysis
UHGV-0105607_6	UniRef90	UniRef90_A0A373KFY8	SH3b domain-containing protein	NA
UHGV-0105607_6	eggNOG-mapper	1226322.HMPREF1545_03576	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0105607_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0105607_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0105607_6	Structural annotation	PF01520, PF18342, NF038140, COG0860, COG4991	NA	NA
UHGV-0105607_7	PHROG	phrog_918	NA	unknown function
UHGV-0105607_7	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-0105607_7	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0105607_7	Pfam	PF19791	NA	DUF6275
UHGV-0105607_7	Structural annotation	PF19791	NA	NA
UHGV-0105607_8	PHROG	phrog_18591	NA	unknown function
UHGV-0105607_8	eggNOG-mapper	1230343.CANP01000040_gene3044	NA	NA
UHGV-0105607_9	PHROG	phrog_443	holin	lysis
UHGV-0105607_9	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0105607_9	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0105607_9	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0105607_9	Structural annotation	PF16945	NA	NA
UHGV-0105607_10	PHROG	phrog_1863	NA	unknown function
UHGV-0105607_10	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0105607_10	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0105607_12	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0105607_12	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0105607_12	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0105607_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0105607_13	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0105607_13	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0105607_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0105607_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0105607_13	COG	COG4926	Phage-related protein	NA
UHGV-0105607_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0105607_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0105607_14	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0105607_14	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-0105607_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0105607_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0105607_15	PHROG	phrog_23464	NA	unknown function
UHGV-0105607_15	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0105607_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0105607_15	Structural annotation	COG3941	NA	NA
UHGV-0105607_17	PHROG	phrog_1021	NA	unknown function
UHGV-0105607_18	PHROG	phrog_885	major tail protein	tail
UHGV-0105607_18	UniRef90	UniRef90_A0A3D3W9F4	CBM_X2 domain-containing protein	NA
UHGV-0105607_18	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0105607_18	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0105607_19	Structural annotation	PF12691	NA	NA
UHGV-0105607_20	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0105607_20	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0105607_20	Structural annotation	TIGR01725	NA	NA
UHGV-0105607_21	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0105607_21	UniRef90	UniRef90_A0A373XMG4	Phage head-tail adapter protein	NA
UHGV-0105607_21	eggNOG-mapper	1536769.P40081_01090	head-tail adaptor	NA
UHGV-0105607_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0105607_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0105607_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0105607_22	PHROG	phrog_5223	neck protein	connector
UHGV-0105607_22	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-0105607_22	eggNOG-mapper	411468.CLOSCI_00547	NA	NA
UHGV-0105607_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0105607_23	UniRef90	UniRef90_A0A373XLR3	Phage major capsid protein	NA
UHGV-0105607_23	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-0105607_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0105607_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0105607_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0105607_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0105607_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0105607_24	UniRef90	UniRef90_A0A373XPG0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0105607_24	eggNOG-mapper	1396.DJ87_978	Clp protease	NA
UHGV-0105607_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0105607_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0105607_24	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0105607_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0105607_25	UniRef90	UniRef90_A0A373XNZ6	Phage portal protein	NA
UHGV-0105607_25	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-0105607_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0105607_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0105607_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0105607_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0105607_26	UniRef90	UniRef90_A0A373XNY0	Terminase large subunit	NA
UHGV-0105607_26	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0105607_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0105607_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0105607_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0105607_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0105607_27	PHROG	phrog_1066	NA	unknown function
UHGV-0105607_27	eggNOG-mapper	931276.Cspa_c10130	NA	NA
UHGV-0105607_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105607_28	UniRef90	UniRef90_A0A373XNZ9	HNH endonuclease	NA
UHGV-0105607_28	eggNOG-mapper	500633.CLOHIR_00362	HNH endonuclease	NA
UHGV-0105607_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0105607_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0105607_29	eggNOG-mapper	394503.Ccel_3053	NA	NA
UHGV-0105607_29	Structural annotation	TIGR01636	NA	NA
UHGV-0105607_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0105607_30	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0105607_30	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0105607_32	PHROG	phrog_15609	NA	unknown function
UHGV-0105607_32	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0105607_32	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0105607_32	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0105607_33	PHROG	phrog_8470	NA	unknown function
UHGV-0105607_33	UniRef90	UniRef90_UPI0018E45158	PcfJ domain-containing protein	NA
UHGV-0105607_33	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-0105607_33	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0105607_33	Structural annotation	PF14284	NA	NA
UHGV-0105607_36	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0105607_36	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-0105607_36	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0105607_36	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0105607_36	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0105607_36	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0105607_37	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0105607_37	UniRef90	UniRef90_UPI0018A90D59	HNH endonuclease	NA
UHGV-0105607_37	eggNOG-mapper	1414720.CBYM010000040_gene1642	HNH nucleases	NA
UHGV-0105607_37	Pfam	PF13671	AAA domain	AAA_33
UHGV-0105607_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0105607_38	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-0105607_38	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105607_38	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0105607_38	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0105607_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105607_39	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0105607_39	eggNOG-mapper	411463.EUBVEN_00115	Helix-turn-helix domain	NA
UHGV-0105607_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105607_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0105607_39	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0105607_40	PHROG	phrog_1914	NA	unknown function
UHGV-0105607_40	UniRef90	UniRef90_A0A374NDM7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0105607_40	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0105607_40	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0105607_40	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0105607_40	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0105607_41	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0105607_42	KOfam	K14059	int; integrase	NA
UHGV-0105607_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0105607_42	UniRef90	UniRef90_A0A2N0ULT2	Integrase	NA
UHGV-0105607_42	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0105607_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105607_42	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0105607_42	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA