UHGV-0105641

Genome information

Genome length 59,188 bps

CDS count 89

Completeness 99.90% (high-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105641
vOTU ID	vOTU-062604
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_237449
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	5
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.9
Jumbo phage	No

Genome content
Genome length	59,188 bps
GC content	49.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	89
CDS density	88.41%
Average CDS length	590.90 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105641_1	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0105641_1	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0105641_1	UniRef90	UniRef90_A0A174FF96	Sigma-24	NA
UHGV-0105641_1	eggNOG-mapper	1203611.KB894542_gene714	Belongs to the sigma-70 factor family. ECF subfamily	NA
UHGV-0105641_1	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0105641_1	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0105641_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0105641_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0105641_2	UniRef90	UniRef90_E4M9L3	OMP_b-brl domain-containing protein	NA
UHGV-0105641_2	eggNOG-mapper	1203611.KB894542_gene715	DNA-templated transcription, initiation	NA
UHGV-0105641_2	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0105641_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0105641_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0105641_3	UniRef90	UniRef90_A0A5B5VKE6	Site-specific integrase	NA
UHGV-0105641_3	eggNOG-mapper	908612.HMPREF9720_2931	Belongs to the 'phage' integrase family	NA
UHGV-0105641_3	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0105641_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105641_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0105641_3	Structural annotation	PF00589, MF_01808, NF002331, COG4974	NA	NA
UHGV-0105641_4	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0105641_4	eggNOG-mapper	742725.HMPREF9450_02112	NA	NA
UHGV-0105641_5	PHROG	phrog_38431	NA	unknown function
UHGV-0105641_5	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0105641_5	eggNOG-mapper	445970.ALIPUT_01628	NA	NA
UHGV-0105641_7	PHROG	phrog_28898	NA	unknown function
UHGV-0105641_7	eggNOG-mapper	742725.HMPREF9450_02107	NA	NA
UHGV-0105641_7	Structural annotation	PF10781	NA	NA
UHGV-0105641_9	PHROG	phrog_16490	NA	unknown function
UHGV-0105641_9	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0105641_9	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-0105641_10	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0105641_10	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0105641_11	PHROG	phrog_26448	NA	unknown function
UHGV-0105641_11	eggNOG-mapper	742726.HMPREF9448_01214	NA	NA
UHGV-0105641_11	Pfam	PF20647	NA	DUF6808
UHGV-0105641_11	Structural annotation	PF20647	NA	NA
UHGV-0105641_12	PHROG	phrog_873	endolysin	head and packaging
UHGV-0105641_12	UniRef90	UniRef90_UPI0018ABA41D	structural protein P5	NA
UHGV-0105641_12	eggNOG-mapper	411477.PARMER_01682	NA	NA
UHGV-0105641_14	PHROG	phrog_15037	NA	unknown function
UHGV-0105641_14	UniRef90	UniRef90_UPI0015E74944	phage holin family protein	NA
UHGV-0105641_14	eggNOG-mapper	1347393.HG726021_gene389	NA	NA
UHGV-0105641_16	Structural annotation	PF02185	NA	NA
UHGV-0105641_17	Pfam	PF07196	Flagellin hook IN motif	Flagellin_IN
UHGV-0105641_17	Structural annotation	PF07603	NA	NA
UHGV-0105641_19	eggNOG-mapper	742727.HMPREF9447_04856	NA	NA
UHGV-0105641_20	PHROG	phrog_17422	NA	unknown function
UHGV-0105641_20	UniRef90	UniRef90_UPI00189D96D6	collagen-like protein	NA
UHGV-0105641_20	eggNOG-mapper	445970.ALIPUT_01638	cellulase activity	NA
UHGV-0105641_20	COG	COG4926	Phage-related protein	NA
UHGV-0105641_20	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0105641_21	PHROG	phrog_11623	NA	unknown function
UHGV-0105641_21	UniRef90	UniRef90_F0FAG9	NA	NA
UHGV-0105641_21	eggNOG-mapper	888743.HMPREF9141_2586	NA	NA
UHGV-0105641_21	Pfam	PF12873	NA	DUF3825
UHGV-0105641_21	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0105641_21	Structural annotation	PF12873	NA	NA
UHGV-0105641_22	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0105641_22	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0105641_22	UniRef90	UniRef90_UPI001D082E5A	phage antirepressor KilAC domain-containing protein	NA
UHGV-0105641_22	eggNOG-mapper	1121100.JCM6294_530	BRO family, N-terminal domain	NA
UHGV-0105641_22	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0105641_22	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0105641_22	COG	COG3617	Prophage antirepressor	NA
UHGV-0105641_22	Structural annotation	PF02498, PF03374, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0105641_25	PHROG	phrog_28198	NA	unknown function
UHGV-0105641_25	Structural annotation	NF033948	NA	NA
UHGV-0105641_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105641_26	UniRef90	UniRef90_UPI001C37CF4A	helix-turn-helix domain-containing protein	NA
UHGV-0105641_26	eggNOG-mapper	411476.BACOVA_02995	NA	NA
UHGV-0105641_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105641_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105641_26	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0105641_27	PHROG	phrog_2384	NA	unknown function
UHGV-0105641_27	UniRef90	UniRef90_A0A143XM67	p63C domain protein	NA
UHGV-0105641_27	eggNOG-mapper	585502.HMPREF0645_2627	P63C domain	NA
UHGV-0105641_27	Pfam	PF10546	P63C domain	P63C
UHGV-0105641_27	Structural annotation	PF10546, COG3617	NA	NA
UHGV-0105641_28	PHROG	phrog_19292	NA	unknown function
UHGV-0105641_28	UniRef90	UniRef90_A0A5D8YP02	Heavy metal-binding domain-containing protein	NA
UHGV-0105641_28	Structural annotation	PF11524, MF_00338, TIGR03884, COG0393	NA	NA
UHGV-0105641_29	Structural annotation	PF14135, MF_01459, TIGR03066, COG3040	NA	NA
UHGV-0105641_30	PHROG	phrog_10156	NA	unknown function
UHGV-0105641_30	eggNOG-mapper	1347393.HG726021_gene471	NA	NA
UHGV-0105641_31	PHROG	phrog_6305	tail protein	tail
UHGV-0105641_31	eggNOG-mapper	445970.ALIPUT_01641	NA	NA
UHGV-0105641_31	Structural annotation	PF11514, TIGR01633, COG4722	NA	NA
UHGV-0105641_32	PHROG	phrog_5377	NA	unknown function
UHGV-0105641_32	eggNOG-mapper	1077285.AGDG01000032_gene4183	NA	NA
UHGV-0105641_33	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0105641_33	PHROG	phrog_14295	NA	unknown function
UHGV-0105641_33	UniRef90	UniRef90_A0A174HCG8	ATPase involved in DNA repair	NA
UHGV-0105641_33	eggNOG-mapper	445970.ALIPUT_01650	NA	NA
UHGV-0105641_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0105641_34	eggNOG-mapper	585543.HMPREF0969_03351	NA	NA
UHGV-0105641_36	PHROG	phrog_14600	NA	unknown function
UHGV-0105641_36	eggNOG-mapper	445970.ALIPUT_01653	NA	NA
UHGV-0105641_36	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0105641_37	PHROG	phrog_5597	NA	unknown function
UHGV-0105641_37	eggNOG-mapper	445970.ALIPUT_01654	NA	NA
UHGV-0105641_37	Structural annotation	PF16807, TIGR01633	NA	NA
UHGV-0105641_38	PHROG	phrog_16482	NA	unknown function
UHGV-0105641_38	eggNOG-mapper	411477.PARMER_02036	NA	NA
UHGV-0105641_38	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0105641_39	Pfam	PF20449	NA	DUF6706
UHGV-0105641_39	Structural annotation	PF20449	NA	NA
UHGV-0105641_41	PHROG	phrog_29	major head protein	head and packaging
UHGV-0105641_41	UniRef90	UniRef90_A0A8D9UHX5	Major capsid protein E	NA
UHGV-0105641_41	eggNOG-mapper	1268240.ATFI01000008_gene2587	Phage major capsid protein E	NA
UHGV-0105641_41	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0105641_42	PHROG	phrog_38330	NA	unknown function
UHGV-0105641_42	eggNOG-mapper	1268240.ATFI01000008_gene2586	NA	NA
UHGV-0105641_42	Structural annotation	PF02924	NA	NA
UHGV-0105641_43	PHROG	phrog_5824	NA	unknown function
UHGV-0105641_43	eggNOG-mapper	585543.HMPREF0969_03364	NA	NA
UHGV-0105641_44	PHROG	phrog_1365	NA	unknown function
UHGV-0105641_45	PHROG	phrog_64	portal protein	head and packaging
UHGV-0105641_45	UniRef90	UniRef90_B0MVS6	Putative phage portal protein, SPP1 family	NA
UHGV-0105641_45	eggNOG-mapper	445970.ALIPUT_01192	phage portal protein, SPP1	NA
UHGV-0105641_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0105641_45	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0105641_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105641_46	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0105641_46	UniRef90	UniRef90_UPI001BB443EC	PBSX family phage terminase large subunit	NA
UHGV-0105641_46	eggNOG-mapper	1227266.HMPREF1551_00524	Phage terminase, large subunit, PBSX family	NA
UHGV-0105641_46	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0105641_46	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0105641_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105641_46	Structural annotation	PF17288, PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0105641_47	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0105641_47	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0105641_47	UniRef90	UniRef90_A0A5B5VJF1	Terminase small subunit	NA
UHGV-0105641_47	eggNOG-mapper	1347393.HG726031_gene3965	Terminase small subunit	NA
UHGV-0105641_47	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0105641_47	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0105641_47	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0105641_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105641_49	Structural annotation	NF010465, COG1476	NA	NA
UHGV-0105641_53	PHROG	phrog_32789	NA	unknown function
UHGV-0105641_53	UniRef90	UniRef90_UPI0018736416	acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase	NA
UHGV-0105641_53	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep
UHGV-0105641_53	Structural annotation	PF21711, MF_01525, NF007797, COG1045	NA	NA
UHGV-0105641_54	Structural annotation	PF13973, PF17384, COG1862	NA	NA
UHGV-0105641_56	PHROG	phrog_8684	NA	unknown function
UHGV-0105641_56	UniRef90	UniRef90_UPI0015BFB08D	YopX family protein	NA
UHGV-0105641_56	eggNOG-mapper	445970.ALIPUT_01614	YopX protein	NA
UHGV-0105641_56	Pfam	PF09643	YopX protein	YopX
UHGV-0105641_56	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0105641_56	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0105641_60	PHROG	phrog_1934	NA	unknown function
UHGV-0105641_60	UniRef90	UniRef90_UPI0016096E31	zinc-finger-containing protein	NA
UHGV-0105641_60	eggNOG-mapper	1123508.JH636442_gene4425	zinc-finger-containing domain	NA
UHGV-0105641_60	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0105641_60	Structural annotation	PF11672	NA	NA
UHGV-0105641_62	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0105641_62	UniRef90	UniRef90_UPI0016270003	ERF family protein	NA
UHGV-0105641_62	eggNOG-mapper	1327970.R9ZVT8_9CAUD	ERF superfamily	NA
UHGV-0105641_62	Pfam	PF04404	ERF superfamily	ERF
UHGV-0105641_62	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0105641_65	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0105641_65	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0105641_65	UniRef90	UniRef90_UPI0018746783	single-stranded DNA-binding protein	NA
UHGV-0105641_65	eggNOG-mapper	1033732.CAHI01000006_gene2216	Single-stranded DNA-binding protein	NA
UHGV-0105641_65	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105641_65	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0105641_65	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105641_65	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0105641_65	Structural annotation	PF00436, MF_00984, NF006445, COG0629	NA	NA
UHGV-0105641_66	eggNOG-mapper	742725.HMPREF9450_02078	NA	NA
UHGV-0105641_67	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105641_67	UniRef90	UniRef90_UPI0018753CE6	recombination protein NinG	NA
UHGV-0105641_67	eggNOG-mapper	1268240.ATFI01000007_gene442	Bacteriophage Lambda NinG protein	NA
UHGV-0105641_67	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0105641_67	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0105641_68	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0105641_68	UniRef90	UniRef90_UPI0013DE86F0	DnaD domain protein	NA
UHGV-0105641_68	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-0105641_68	Structural annotation	PF10771, MF_01177, NF041413, COG0640	NA	NA
UHGV-0105641_69	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0105641_69	UniRef90	UniRef90_UPI0018749974	radical SAM protein	NA
UHGV-0105641_69	eggNOG-mapper	445970.ALIPUT_01609	radical SAM domain protein	NA
UHGV-0105641_69	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0105641_69	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-0105641_73	Structural annotation	NF011227	NA	NA
UHGV-0105641_74	Structural annotation	PF16546	NA	NA
UHGV-0105641_77	Structural annotation	PF18350	NA	NA
UHGV-0105641_82	PHROG	phrog_35741	NA	unknown function
UHGV-0105641_82	eggNOG-mapper	445970.ALIPUT_01619	NA	NA
UHGV-0105641_83	PHROG	phrog_8684	NA	unknown function
UHGV-0105641_83	UniRef90	UniRef90_UPI0018987415	YopX family protein	NA
UHGV-0105641_83	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-0105641_83	Pfam	PF09643	YopX protein	YopX
UHGV-0105641_83	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0105641_83	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0105641_84	PHROG	phrog_874	NA	unknown function
UHGV-0105641_84	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0105641_84	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0105641_87	UniRef90	UniRef90_A0A5B5VMX3	Helix-turn-helix domain-containing protein	NA
UHGV-0105641_87	eggNOG-mapper	1347393.HG726021_gene520	Helix-turn-helix domain	NA
UHGV-0105641_87	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0105641_87	COG	COG0789	DNA-binding transcriptional regulator, MerR family	NA
UHGV-0105641_88	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0105641_88	UniRef90	UniRef90_R6VD89	Peptidase_S24 domain-containing protein	NA
UHGV-0105641_88	eggNOG-mapper	679935.Alfi_2522	Transcriptional regulator	NA
UHGV-0105641_88	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0105641_88	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0105641_89	KOfam	K00793	ribE, RIB5; riboflavin synthase [EC:2.5.1.9]	NA
UHGV-0105641_89	UniRef90	UniRef90_E4M9L5	Riboflavin synthase, alpha subunit	NA
UHGV-0105641_89	eggNOG-mapper	1203611.KB894542_gene717	Lumazine binding domain	NA
UHGV-0105641_89	Pfam	PF00677	Lumazine binding domain	Lum_binding
UHGV-0105641_89	NCBIFam	NF006767.1	riboflavin synthase	NA
UHGV-0105641_89	COG	COG0307	Riboflavin synthase alpha chain	NA