UHGV-0105664

Genome information

Genome length 38,311 bps

CDS count 56

Completeness 91.22% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105664
vOTU ID	vOTU-072770
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_240346
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.97
Jumbo phage	No

Genome content
Genome length	38,311 bps
GC content	39.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.40%
Average CDS length	622.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105664_1	PHROG	phrog_881	holin	lysis
UHGV-0105664_1	UniRef90	UniRef90_A0A2P8EI20	Dp-1 family holin	NA
UHGV-0105664_1	eggNOG-mapper	1321782.HMPREF1986_02282	Putative phage holin Dp-1	NA
UHGV-0105664_1	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0105664_1	Structural annotation	PF16938	NA	NA
UHGV-0105664_2	PHROG	phrog_4105	NA	unknown function
UHGV-0105664_2	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0105664_3	Structural annotation	PF00386	NA	NA
UHGV-0105664_4	PHROG	phrog_18725	NA	unknown function
UHGV-0105664_4	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0105664_4	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0105664_5	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0105664_5	PHROG	phrog_11157	NA	unknown function
UHGV-0105664_5	UniRef90	UniRef90_A0A416HMQ3	Big_13 domain-containing protein	NA
UHGV-0105664_5	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-0105664_5	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0105664_5	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-0105664_5	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0105664_7	PHROG	phrog_13879	NA	unknown function
UHGV-0105664_7	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0105664_7	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0105664_8	PHROG	phrog_1194	NA	unknown function
UHGV-0105664_8	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0105664_8	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0105664_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0105664_9	eggNOG-mapper	1280689.AUJC01000003_gene976	phage tail tape measure protein	NA
UHGV-0105664_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0105664_9	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0105664_10	PHROG	phrog_706	NA	unknown function
UHGV-0105664_10	UniRef90	UniRef90_R5H1B0	Bacteriophage Gp15 protein	NA
UHGV-0105664_10	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0105664_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0105664_10	Structural annotation	PF06854	NA	NA
UHGV-0105664_11	UniRef90	UniRef90_A0A2Z4QA03	Tail assembly chaperone protein	NA
UHGV-0105664_11	eggNOG-mapper	397290.C810_05234	NA	NA
UHGV-0105664_11	Pfam	PF20378	NA	DUF6673
UHGV-0105664_11	Structural annotation	PF10666	NA	NA
UHGV-0105664_12	PHROG	phrog_3099	NA	unknown function
UHGV-0105664_12	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-0105664_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0105664_13	PHROG	phrog_3266	tail completion	connector
UHGV-0105664_13	Structural annotation	PF12691	NA	NA
UHGV-0105664_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0105664_14	UniRef90	UniRef90_A0A174B7G8	Minor capsid protein	NA
UHGV-0105664_14	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0105664_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0105664_14	Structural annotation	PF11114	NA	NA
UHGV-0105664_15	PHROG	phrog_3366	NA	unknown function
UHGV-0105664_15	eggNOG-mapper	632245.CLP_1651	NA	NA
UHGV-0105664_15	Pfam	PF20536	NA	DUF6751
UHGV-0105664_15	Structural annotation	PF20536	NA	NA
UHGV-0105664_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0105664_17	PHROG	phrog_212	major head protein	head and packaging
UHGV-0105664_17	UniRef90	UniRef90_A0A412FGZ1	Phage capsid protein	NA
UHGV-0105664_17	eggNOG-mapper	318464.IO99_00580	NA	NA
UHGV-0105664_17	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0105664_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0105664_18	UniRef90	UniRef90_UPI00164B0393	phage scaffolding protein	NA
UHGV-0105664_18	eggNOG-mapper	411460.RUMTOR_02088	COG NOG36366 non supervised orthologous group	NA
UHGV-0105664_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0105664_18	Structural annotation	PF06810	NA	NA
UHGV-0105664_19	Structural annotation	PF11344	NA	NA
UHGV-0105664_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0105664_20	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0105664_20	eggNOG-mapper	33035.JPJF01000030_gene2290	Phage minor capsid protein 2	NA
UHGV-0105664_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0105664_20	COG	COG2369	NA	NA
UHGV-0105664_20	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0105664_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0105664_21	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0105664_21	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0105664_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0105664_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105664_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0105664_22	UniRef90	UniRef90_R7N5K9	Terminase_3 domain-containing protein	NA
UHGV-0105664_22	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0105664_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0105664_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105664_22	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0105664_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0105664_23	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0105664_23	UniRef90	UniRef90_UPI0015702ED4	terminase small subunit	NA
UHGV-0105664_23	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0105664_23	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0105664_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0105664_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0105664_23	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0105664_26	Structural annotation	PF18358	NA	NA
UHGV-0105664_28	KOfam	K24451	zim; modification methylase	NA
UHGV-0105664_28	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0105664_28	UniRef90	UniRef90_A0A3R6Q0Y1	Methyltransferase	NA
UHGV-0105664_28	eggNOG-mapper	411473.RUMCAL_00273	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0105664_28	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0105664_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0105664_28	COG	COG0863	DNA modification methylase	NA
UHGV-0105664_28	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0105664_29	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0105664_29	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0105664_29	UniRef90	UniRef90_A0A3R6MX70	Helicase	NA
UHGV-0105664_29	eggNOG-mapper	394503.Ccel_3060	SNF2 family N-terminal domain	NA
UHGV-0105664_29	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0105664_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0105664_29	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0105664_29	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-0105664_30	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0105664_30	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0105664_30	UniRef90	UniRef90_UPI00059FC1F8	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0105664_30	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0105664_30	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0105664_30	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0105664_31	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0105664_31	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0105664_31	UniRef90	UniRef90_UPI001C01C809	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0105664_31	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0105664_31	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0105664_31	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0105664_31	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0105664_33	PHROG	phrog_20593	NA	unknown function
UHGV-0105664_34	UniRef90	UniRef90_UPI00192387A0	NA	NA
UHGV-0105664_34	eggNOG-mapper	1235800.C819_02246	NA	NA
UHGV-0105664_35	PHROG	phrog_8684	NA	unknown function
UHGV-0105664_35	UniRef90	UniRef90_A0A6L6XDP0	YopX domain-containing protein	NA
UHGV-0105664_35	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0105664_35	Pfam	PF09643	YopX protein	YopX
UHGV-0105664_35	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0105664_35	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0105664_37	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-0105664_41	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0105664_41	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0105664_41	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0105664_41	eggNOG-mapper	476272.RUMHYD_03359	DNA-dependent DNA replication	NA
UHGV-0105664_41	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0105664_41	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0105664_41	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0105664_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0105664_42	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105664_42	UniRef90	UniRef90_A0A6N3H631	Endodeoxyribonuclease RusA	NA
UHGV-0105664_42	eggNOG-mapper	1399942.U3PDU0_9CAUD	magnesium ion binding	NA
UHGV-0105664_42	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0105664_43	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0105664_43	UniRef90	UniRef90_UPI001C016064	ORF6C domain-containing protein	NA
UHGV-0105664_43	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-0105664_43	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0105664_43	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0105664_43	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0105664_43	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0105664_44	PHROG	phrog_7566	NA	unknown function
UHGV-0105664_44	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-0105664_45	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105664_45	UniRef90	UniRef90_A0A174WPU3	Prophage Lp1 protein 19	NA
UHGV-0105664_45	eggNOG-mapper	742733.HMPREF9469_01848	NA	NA
UHGV-0105664_45	Pfam	PF12684	NA	DUF3799
UHGV-0105664_45	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0105664_45	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0105664_46	PHROG	phrog_3657	NA	unknown function
UHGV-0105664_46	eggNOG-mapper	1304866.K413DRAFT_3015	NA	NA
UHGV-0105664_47	PHROG	phrog_1499	NA	unknown function
UHGV-0105664_47	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-0105664_47	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0105664_47	PADLOC	AAA_15	NA	NA
UHGV-0105664_47	Pfam	PF13476	AAA domain	AAA_23
UHGV-0105664_47	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0105664_47	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0105664_49	Structural annotation	PF11127	NA	NA
UHGV-0105664_50	PHROG	phrog_6058	NA	unknown function
UHGV-0105664_50	UniRef90	UniRef90_A0A0V8QBN7	Histone-lysine N-methyltransferase	NA
UHGV-0105664_50	eggNOG-mapper	1232447.BAHW02000016_gene1142	NA	NA
UHGV-0105664_50	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0105664_51	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0105664_52	UniRef90	UniRef90_UPI0015F7B8EC	XRE family transcriptional regulator	NA
UHGV-0105664_52	eggNOG-mapper	1321814.HMPREF9089_00909	Helix-turn-helix domain of resolvase	NA
UHGV-0105664_52	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0105664_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0105664_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105664_53	UniRef90	UniRef90_A0A173S886	Transcriptional repressor DicA	NA
UHGV-0105664_53	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-0105664_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105664_53	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0105664_53	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0105664_54	PHROG	phrog_87	metallo-protease	other
UHGV-0105664_54	UniRef90	UniRef90_A0A3R6K8Y6	Peptidase_M78 domain-containing protein	NA
UHGV-0105664_54	eggNOG-mapper	553973.CLOHYLEM_07298	IrrE N-terminal-like domain	NA
UHGV-0105664_54	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0105664_54	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0105664_54	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0105664_55	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0105664_55	PHROG	phrog_19856	NA	unknown function
UHGV-0105664_55	UniRef90	UniRef90_A0A4S2ABL5	Ftsk_gamma domain-containing protein	NA
UHGV-0105664_55	eggNOG-mapper	397290.C810_01426	Restriction endonuclease	NA
UHGV-0105664_55	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0105664_55	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0105664_55	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0105664_55	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0105664_56	KOfam	K14059	int; integrase	NA
UHGV-0105664_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0105664_56	UniRef90	UniRef90_UPI001C011E7D	tyrosine-type recombinase/integrase	NA
UHGV-0105664_56	eggNOG-mapper	1280689.AUJC01000011_gene1488	Phage integrase family	NA
UHGV-0105664_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105664_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0105664_56	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA