UHGV-0105667

Genome information

Genome length 48,539 bps

CDS count 85

Completeness 85.24% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105667
vOTU ID	vOTU-036192
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_240341
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.09
Jumbo phage	No

Genome content
Genome length	48,539 bps
GC content	36.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	85
CDS density	91.25%
Average CDS length	524.19 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105667_1	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0105667_1	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0105667_2	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0105667_2	UniRef90	UniRef90_R7BGE2	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0105667_2	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0105667_2	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0105667_2	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0105667_2	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0105667_4	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0105667_4	eggNOG-mapper	1122172.KB890259_gene1441	NA	NA
UHGV-0105667_4	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0105667_4	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0105667_4	Structural annotation	NF040939, COG3355	NA	NA
UHGV-0105667_6	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0105667_6	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-0105667_6	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0105667_11	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0105667_11	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-0105667_11	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0105667_11	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0105667_11	COG	COG5410	NA	NA
UHGV-0105667_11	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0105667_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0105667_12	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0105667_12	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0105667_12	Pfam	PF07374	NA	DUF1492
UHGV-0105667_12	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0105667_12	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0105667_13	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0105667_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0105667_14	UniRef90	UniRef90_R7BGE4	SPP1 family phage portal protein	NA
UHGV-0105667_14	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0105667_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0105667_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0105667_15	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0105667_16	PHROG	phrog_909	major head protein	head and packaging
UHGV-0105667_16	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0105667_17	PHROG	phrog_29	major head protein	head and packaging
UHGV-0105667_17	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0105667_17	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0105667_17	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0105667_17	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0105667_18	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0105667_18	Structural annotation	PF21169	NA	NA
UHGV-0105667_19	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0105667_20	PHROG	phrog_4105	NA	unknown function
UHGV-0105667_20	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0105667_21	PHROG	phrog_18218	NA	unknown function
UHGV-0105667_21	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0105667_21	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0105667_22	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0105667_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0105667_24	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0105667_25	Structural annotation	PF05657	NA	NA
UHGV-0105667_26	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0105667_26	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0105667_28	PHROG	phrog_36112	NA	unknown function
UHGV-0105667_28	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0105667_28	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0105667_28	Structural annotation	PF10666	NA	NA
UHGV-0105667_30	PHROG	phrog_28918	NA	unknown function
UHGV-0105667_30	UniRef90	UniRef90_A0A8D9PGP0	Minor tail protein	NA
UHGV-0105667_30	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0105667_30	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0105667_30	Structural annotation	PF20155	NA	NA
UHGV-0105667_31	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0105667_31	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0105667_31	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0105667_31	Structural annotation	PF20155, PF06456, COG3941	NA	NA
UHGV-0105667_35	PHROG	phrog_1194	NA	unknown function
UHGV-0105667_35	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0105667_35	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0105667_36	Structural annotation	PF07761	NA	NA
UHGV-0105667_37	PHROG	phrog_6616	tail protein	tail
UHGV-0105667_37	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0105667_37	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0105667_37	COG	COG4926	Phage-related protein	NA
UHGV-0105667_37	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0105667_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0105667_39	PHROG	phrog_6745	endolysin	lysis
UHGV-0105667_39	UniRef90	UniRef90_A0A1Q6KJN7	LysM domain-containing protein	NA
UHGV-0105667_39	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0105667_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0105667_39	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0105667_39	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0105667_41	Structural annotation	PF03444, MF_00732, NF003025, COG1321	NA	NA
UHGV-0105667_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105667_42	UniRef90	UniRef90_UPI001D081DA8	helix-turn-helix domain-containing protein	NA
UHGV-0105667_42	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0105667_42	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0105667_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0105667_42	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0105667_43	UniRef90	UniRef90_UPI000E4D6E81	helix-turn-helix domain-containing protein	NA
UHGV-0105667_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105667_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105667_43	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0105667_48	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0105667_48	Structural annotation	PF10552	NA	NA
UHGV-0105667_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0105667_51	PHROG	phrog_26861	NA	unknown function
UHGV-0105667_51	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-0105667_51	eggNOG-mapper	511680.BUTYVIB_01841	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0105667_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105667_51	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0105667_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105667_51	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0105667_53	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0105667_53	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105667_53	UniRef90	UniRef90_R7BHE4	Phage-related protein	NA
UHGV-0105667_53	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-0105667_53	Pfam	PF13476	AAA domain	AAA_23
UHGV-0105667_53	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0105667_53	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0105667_54	PHROG	phrog_1510	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0105667_54	UniRef90	UniRef90_F8WPQ1	Superinfection exclusion protein	NA
UHGV-0105667_54	eggNOG-mapper	90371.CY43_01695	Superinfection exclusion protein, bacteriophage P22	NA
UHGV-0105667_54	Pfam	PF17420	Superinfection exclusion gene product 17	GP17
UHGV-0105667_54	Structural annotation	PF17420	NA	NA
UHGV-0105667_56	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0105667_56	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0105667_56	UniRef90	UniRef90_A0A1C5WMV6	p33	NA
UHGV-0105667_56	eggNOG-mapper	431943.CKL_0416	RecT family	NA
UHGV-0105667_56	Pfam	PF03837	RecT family	RecT
UHGV-0105667_56	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0105667_56	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0105667_56	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0105667_58	PHROG	phrog_25456	NA	unknown function
UHGV-0105667_60	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0105667_60	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0105667_60	UniRef90	UniRef90_UPI001BC4CEB0	MBL fold metallo-hydrolase	NA
UHGV-0105667_60	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0105667_60	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0105667_60	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0105667_60	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0105667_63	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0105667_64	UniRef90	UniRef90_F7JKC2	NA	NA
UHGV-0105667_64	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0105667_65	PHROG	phrog_10714	NA	unknown function
UHGV-0105667_65	UniRef90	UniRef90_R6PMU2	DNA polymerase II large subunit	NA
UHGV-0105667_65	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0105667_66	UniRef90	UniRef90_UPI001D005DC4	NA	NA
UHGV-0105667_66	eggNOG-mapper	592028.GCWU000321_00789	NA	NA
UHGV-0105667_66	Pfam	PF07866	NA	DUF1653
UHGV-0105667_66	COG	COG4728	NA	NA
UHGV-0105667_66	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0105667_68	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0105667_68	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0105667_68	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0105667_68	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0105667_68	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105667_68	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0105667_68	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105667_68	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0105667_68	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0105667_69	PHROG	phrog_19106	NA	unknown function
UHGV-0105667_69	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0105667_69	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0105667_69	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0105667_69	Structural annotation	TIGR01453	NA	NA
UHGV-0105667_74	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0105667_74	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0105667_74	UniRef90	UniRef90_UPI001C399578	Site-specific DNA-methyltransferase	NA
UHGV-0105667_74	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0105667_74	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0105667_74	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0105667_74	COG	COG0863	DNA modification methylase	NA
UHGV-0105667_74	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0105667_76	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0105667_76	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0105667_76	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-0105667_76	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0105667_77	PHROG	phrog_9804	NA	unknown function
UHGV-0105667_77	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-0105667_77	eggNOG-mapper	626523.GCWU000342_01038	Loader and inhibitor of phage G40P	NA
UHGV-0105667_77	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0105667_77	Structural annotation	PF11417	NA	NA
UHGV-0105667_81	UniRef90	UniRef90_UPI001D05EDA5	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0105667_81	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0105667_81	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0105667_83	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0105667_83	PHROG	phrog_95	integrase	integration and excision
UHGV-0105667_83	UniRef90	UniRef90_UPI001D084942	recombinase family protein	NA
UHGV-0105667_83	eggNOG-mapper	246199.CUS_6803	NA	NA
UHGV-0105667_83	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0105667_83	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0105667_83	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0105667_83	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0105667_84	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0105667_84	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0105667_84	UniRef90	UniRef90_A0A1C5S3W3	Stage II sporulation protein AC	NA
UHGV-0105667_84	eggNOG-mapper	515620.EUBELI_01330	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0105667_84	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0105667_84	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0105667_84	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0105667_84	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0105667_84	Structural annotation	PF04542, MF_04164, TIGR02846	NA	NA
UHGV-0105667_85	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0105667_85	PHROG	phrog_36879	NA	unknown function
UHGV-0105667_85	UniRef90	UniRef90_R7NA87	Transcriptional repressor NrdR	NA
UHGV-0105667_85	eggNOG-mapper	1410661.JNKW01000016_gene1133	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0105667_85	Pfam	PF03477	ATP cone domain	ATP-cone
UHGV-0105667_85	NCBIFam	TIGR00244.1	transcriptional regulator NrdR	NA
UHGV-0105667_85	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0105667_85	HAMAP	MF_00440	Transcriptional repressor NrdR [nrdR]	NA